Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-42 176.0 86 100.0
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.4e-14 82.0 54 79.6
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 5.4e-14 80.9 54 77.8
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 2.7e-13 78.6 54 75.9
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.5e-13 78.2 54 74.1
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 3.5e-13 78.2 54 74.1
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 4.5e-13 77.8 54 74.1
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 5.9e-13 77.4 54 74.1
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 5.9e-13 77.4 54 75.9
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 7.7e-13 77.0 54 72.2
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 7.7e-13 77.0 54 72.2
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 7.7e-13 77.0 54 72.2
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 7.7e-13 77.0 54 72.2
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 1.0e-12 76.6 54 72.2
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.3e-12 76.3 54 72.2
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.3e-12 76.3 54 70.4
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.7e-12 75.9 54 74.1
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.7e-12 75.9 54 72.2
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 1.7e-12 75.9 54 74.1
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-12 75.9 54 75.9
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.3e-12 75.5 54 74.1
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.3e-12 75.5 54 70.4
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.9e-12 75.1 54 72.2
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.9e-12 75.1 54 72.2
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 3.8e-12 74.7 54 74.1
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.8e-12 74.7 54 70.4
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 5.0e-12 74.3 54 72.2
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 6.6e-12 73.9 54 72.2
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 6.6e-12 73.9 54 70.4
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 8.6e-12 73.6 54 70.4
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 8.6e-12 73.6 54 70.4
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 8.6e-12 73.6 54 72.2
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 8.6e-12 73.6 54 70.4
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 8.6e-12 73.6 54 70.4
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 8.6e-12 73.6 54 70.4
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 70.4
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 70.4
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 72.2
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 70.4
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 70.4
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 70.4
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 68.5
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 70.4
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 68.5
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 70.4
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 1.5e-11 72.8 54 68.5
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.9e-11 72.4 54 68.5
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.9e-11 72.4 54 66.7
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.9e-11 72.4 54 70.4
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 1.9e-11 72.4 54 70.4
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.9e-11 72.4 54 70.4
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.5e-11 72.0 54 70.4
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.5e-11 72.0 54 66.7
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.5e-11 72.0 54 70.4
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 2.5e-11 72.0 53 67.9
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 2.5e-11 72.0 54 68.5
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 3.3e-11 71.6 54 68.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.3e-11 71.6 54 70.4
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.3e-11 71.6 54 70.4
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.3e-11 71.6 54 70.4
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 3.3e-11 71.6 54 70.4
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 3.3e-11 71.6 54 70.4
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 66.7
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 66.7
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 66.7
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 66.7
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 66.7
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 68.5
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 68.5
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 66.7
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 4.2e-11 71.2 54 70.4
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 5.5e-11 70.9 54 68.5
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 5.5e-11 70.9 54 66.7
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 5.5e-11 70.9 54 68.5
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 5.5e-11 70.9 54 68.5
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 7.2e-11 70.5 54 66.7
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 7.2e-11 70.5 54 64.8
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 7.2e-11 70.5 54 66.7
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 9.5e-11 70.1 54 64.8
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 9.5e-11 70.1 54 64.8
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 9.5e-11 70.1 54 66.7
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 9.5e-11 70.1 54 66.7
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.6e-10 69.3 54 64.8
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.6e-10 69.3 54 68.5
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.6e-10 69.3 54 68.5
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 1.6e-10 69.3 54 64.8
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.1e-10 68.9 54 66.7
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 2.1e-10 68.9 54 64.8
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 2.1e-10 68.9 54 66.7
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.1e-10 68.9 54 66.7
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.1e-10 68.9 54 64.8
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 2.8e-10 68.6 54 66.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 2.8e-10 68.6 54 64.8
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 2.8e-10 68.6 53 62.3
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 3.6e-10 68.2 54 64.8
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 3.6e-10 68.2 54 64.8
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 3.6e-10 68.2 54 64.8
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 3.6e-10 68.2 54 64.8
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 4.7e-10 67.8 54 63.0
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 4.7e-10 67.8 54 64.8
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 8.0e-10 67.0 54 66.7
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.0e-09 66.6 54 63.0
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.0e-09 66.6 54 63.0
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.0e-09 66.6 54 63.0
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 1.0e-09 66.6 54 63.0
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 1.0e-09 66.6 54 63.0
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.0e-09 66.6 54 63.0
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.0e-09 66.6 54 64.8
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 1.0e-09 66.6 54 63.0
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.4e-09 66.2 54 64.8
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.4e-09 66.2 54 64.8
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.3e-09 65.5 54 63.0
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 3.0e-09 65.1 54 61.1
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 3.0e-09 65.1 54 63.0
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 4.0e-09 64.7 54 63.0
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 4.0e-09 64.7 54 64.8
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 6.8e-09 63.9 54 61.1
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 6.8e-09 63.9 54 61.1
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 6.8e-09 63.9 54 63.0
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 6.8e-09 63.9 54 63.0
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 6.8e-09 63.9 54 63.0
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 6.8e-09 63.9 55 61.8
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 6.8e-09 63.9 54 61.1
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 8.9e-09 63.5 54 59.3
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 8.9e-09 63.5 54 59.3
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 8.9e-09 63.5 54 57.4
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.5e-08 62.8 54 61.1
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.5e-08 62.8 54 61.1
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 2.0e-08 62.4 54 57.4
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 2.6e-08 62.0 54 57.4
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 7.5e-08 60.5 54 57.4
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 2.2e-07 58.9 44 65.9


User provided reference genes

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