Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-103 379.4 193 100.0
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.5e-59 231.5 231 60.2
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.3e-54 214.9 235 53.2
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.3e-54 214.9 235 53.2
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 6.5e-52 208.0 235 50.6
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.4e-49 200.3 237 47.3
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.4e-48 195.7 237 46.4
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 5.7e-48 194.9 235 48.1
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.3e-47 193.7 235 47.2
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-47 193.4 235 51.9
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.2e-47 193.0 235 47.7
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 2.8e-47 192.6 235 46.8
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 2.8e-47 192.6 234 48.3
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.8e-47 191.8 235 51.9
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 6.3e-47 191.4 234 46.2
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 3.1e-46 189.1 235 44.3
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.6e-45 186.8 235 46.0
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.5e-45 185.7 235 45.5
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 4.5e-45 185.3 235 45.1
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 4.5e-45 185.3 225 48.4
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.3e-44 183.7 238 50.0
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 6.5e-44 181.4 235 44.7
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 1.1e-43 180.6 234 43.6
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.5e-43 180.3 226 46.0
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.9e-43 179.9 237 44.7
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 2.5e-43 179.5 235 45.1
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 2.1e-42 176.4 234 43.6
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 2.1e-42 176.4 237 43.0
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 4.7e-42 175.3 235 43.8
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.0e-41 174.1 235 45.1
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.4e-41 173.7 236 42.4
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 3.0e-41 172.6 235 43.8
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 5.2e-41 171.8 235 41.3
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 3.4e-40 169.1 235 44.3
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 3.4e-40 169.1 234 44.4
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 4.4e-40 168.7 235 42.6
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 4.4e-40 168.7 235 42.6
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-39 167.2 235 43.0
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 1.3e-39 167.2 235 42.1
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.8e-39 166.0 237 43.9
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 3.7e-39 165.6 234 41.5
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 4.9e-39 165.2 235 39.6
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.9e-39 165.2 232 42.7
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 8.3e-39 164.5 235 41.3
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.1e-38 164.1 235 41.7
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.4e-38 163.7 235 41.3
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.4e-38 163.7 232 42.2
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.8e-38 163.3 224 43.3
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 4.1e-38 162.2 235 44.7
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 4.1e-38 162.2 237 39.2
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 5.4e-38 161.8 233 44.6
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 7.0e-38 161.4 224 43.3
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.0e-38 161.4 189 54.5
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 9.1e-38 161.0 234 40.6
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.2e-37 160.6 235 40.0
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 2.0e-37 159.8 224 43.8
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 4.5e-37 158.7 217 44.7
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 5.9e-37 158.3 236 39.8
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.0e-36 157.5 235 41.7
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-36 157.5 239 42.7
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.3e-36 156.4 235 39.6
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 8.6e-36 154.5 235 38.7
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 1.1e-35 154.1 262 38.5
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.1e-35 154.1 227 40.5
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.1e-35 154.1 237 38.4
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 1.2e-34 150.6 235 37.0
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 1.6e-34 150.2 236 40.7
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 6.1e-34 148.3 239 36.4
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-33 146.7 235 38.7
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 2.3e-33 146.4 235 36.2
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 2.3e-33 146.4 235 36.2
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 2.3e-33 146.4 235 40.4
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 4.0e-33 145.6 236 39.0
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.0e-33 145.6 235 38.7
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 5.2e-33 145.2 230 38.7
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 6.8e-33 144.8 235 39.1
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.9e-33 144.4 232 39.2
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 1.2e-32 144.1 236 39.0
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.6e-32 142.9 188 44.7
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 7.5e-32 141.4 235 37.0
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 7.5e-32 141.4 237 38.4
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 1.7e-31 140.2 235 38.7
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-31 140.2 237 40.1
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 2.2e-31 139.8 239 36.4
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.3e-31 138.3 237 40.1
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 1.1e-30 137.5 204 40.2
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.4e-30 137.1 235 37.4
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-30 137.1 125 60.8
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 1.8e-30 136.7 236 36.4
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 4.1e-30 135.6 234 36.3
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 4.1e-30 135.6 236 35.2
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 4.1e-30 135.6 109 66.1
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 7.0e-30 134.8 238 39.5
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 7.0e-30 134.8 235 37.0
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 7.0e-30 134.8 227 38.8
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.6e-29 133.7 234 35.9
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.0e-29 133.3 234 35.9
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 3.5e-29 132.5 118 57.6
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.0e-28 131.0 236 36.0
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.0e-28 131.0 173 48.0
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.0e-28 131.0 236 38.6
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.3e-28 130.6 203 39.9
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 2.9e-28 129.4 169 43.8
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.9e-28 129.4 232 37.1
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 3.9e-28 129.0 123 55.3
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 5.0e-28 128.6 238 35.3
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 6.6e-28 128.3 235 34.5
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.6e-28 127.9 159 45.9
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 8.6e-28 127.9 174 43.7
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 2.5e-27 126.3 227 35.2
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 5.6e-27 125.2 222 35.1
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 7.3e-27 124.8 235 37.0
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 9.5e-27 124.4 235 38.7
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-26 123.6 212 38.7
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-26 122.5 235 35.7
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-26 122.5 235 35.7
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 4.7e-26 122.1 235 36.2
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 8.0e-26 121.3 241 36.5
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 1.4e-25 120.6 242 32.6
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.8e-24 114.4 234 33.8
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 9.8e-24 114.4 234 33.8
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 2.2e-23 113.2 233 33.5
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 2.9e-23 112.8 235 33.6
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.6e-21 107.1 141 46.8
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.8e-21 104.8 234 32.1
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.9e-20 102.4 150 42.7
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-19 100.5 231 33.8
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.9e-19 100.1 228 32.9
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 2.8e-18 96.3 124 48.4
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 6.2e-18 95.1 191 36.6
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.1e-17 92.8 232 28.9
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.5e-16 90.5 75 54.7
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.1e-14 84.3 150 33.3
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-14 84.0 239 28.9
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.9e-14 83.6 166 35.5
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.4e-14 82.0 158 38.6
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 3.0e-12 76.3 91 47.3
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.6e-10 69.3 73 47.9
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 1.8e-09 67.0 126 31.0
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.0e-08 63.5 54 61.1
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.0e-08 63.5 54 61.1
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.6e-08 61.6 164 28.0
ECA246G0900 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.2e-07 60.1 56 44.6
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 1.1e-06 57.8 170 27.6
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.4e-06 57.4 82 43.9
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.4e-06 55.5 64 45.3


User provided reference genes

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