Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 6.8e-196 687.6 470 100.0
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 1.3e-125 454.1 495 58.6
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.8e-124 450.3 482 57.9
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 2.3e-119 433.3 527 57.1
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.5e-118 430.6 533 56.3
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.4e-118 429.5 574 49.7
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 5.7e-118 428.7 500 54.8
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.6e-110 403.3 514 54.9
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 7.5e-110 401.7 475 54.5
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 5.4e-108 395.6 499 53.1
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 5.4e-108 395.6 508 47.0
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 7.8e-107 391.7 613 45.2
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.0e-106 391.3 495 49.3
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.7e-106 390.6 497 53.5
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 2.3e-106 390.2 536 54.9
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 6.6e-106 388.7 557 51.5
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.9e-105 387.1 498 48.8
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 1.9e-105 387.1 547 54.5
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.3e-105 386.3 574 47.7
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 2.1e-104 383.6 564 45.2
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 1.4e-103 380.9 575 48.9
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 2.3e-103 380.2 479 58.5
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 1.2e-102 377.9 492 58.3
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.5e-102 377.5 480 53.8
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 2.6e-102 376.7 505 54.9
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 2.2e-101 373.6 608 46.7
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 2.9e-101 373.2 558 49.1
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.7e-101 372.9 566 52.7
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 6.4e-101 372.1 653 42.7
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 1.2e-99 367.9 558 46.4
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 6.0e-99 365.5 595 49.6
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 7.8e-99 365.2 601 47.9
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.3e-98 364.4 563 44.4
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 2.3e-98 363.6 529 48.6
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 2.3e-98 363.6 536 50.6
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 5.0e-98 362.5 515 53.2
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.1e-97 361.3 482 56.6
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 2.5e-97 360.1 588 43.4
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 3.3e-97 359.8 532 47.4
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 9.5e-97 358.2 596 50.5
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 2.1e-96 357.1 542 47.0
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 4.7e-96 355.9 514 52.1
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 6.2e-96 355.5 488 53.5
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 8.0e-96 355.1 515 54.0
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.1e-95 354.8 481 49.9
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.8e-95 354.0 573 45.0
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 4.0e-95 352.8 535 54.0
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.2e-94 351.3 498 54.6
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 1.2e-94 351.3 542 52.8
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 2.6e-94 350.1 468 52.4
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 2.6e-94 350.1 533 48.2
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.4e-94 349.7 511 48.1
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 3.4e-94 349.7 599 41.1
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.7e-93 347.4 567 46.9
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.7e-93 347.4 506 54.2
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 2.9e-93 346.7 592 47.3
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 1.1e-92 344.7 542 44.5
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.4e-92 344.4 536 48.9
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.4e-92 344.4 493 56.6
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.6e-91 340.9 582 48.1
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.6e-88 330.9 539 50.6
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 2.1e-88 330.5 480 54.0
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.1e-88 330.5 480 54.0
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 2.1e-88 330.5 478 53.8
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 6.8e-87 325.5 538 49.3
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 8.9e-87 325.1 495 55.6
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.5e-86 324.3 445 51.2
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 1.5e-86 324.3 534 48.3
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.0e-86 323.9 507 50.7
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 2.6e-86 323.6 566 48.4
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 3.4e-86 323.2 559 47.6
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 9.9e-86 321.6 564 48.4
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 9.9e-86 321.6 564 46.8
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 9.9e-86 321.6 527 44.2
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.3e-85 321.2 564 48.4
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.7e-85 320.9 221 72.4
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 3.7e-85 319.7 560 43.2
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 8.3e-85 318.5 559 47.4
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 9.2e-84 315.1 566 46.1
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 9.2e-84 315.1 567 42.3
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 9.2e-84 315.1 226 70.4
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.7e-83 313.5 520 49.0
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 3.3e-81 306.6 596 39.6
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.3e-81 306.2 567 46.0
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.1e-80 303.9 583 44.8
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 5.8e-78 295.8 227 67.8
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.3e-77 294.7 223 69.1
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.6e-75 287.7 218 64.7
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 2.7e-75 287.0 630 46.0
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.7e-75 287.0 220 65.9
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 4.6e-75 286.2 554 48.2
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.3e-73 280.0 582 36.9
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 6.2e-72 275.8 504 41.5
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 7.6e-70 268.9 222 67.6
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 2.2e-69 267.3 534 42.5
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 9.3e-68 261.9 188 76.6
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 2.3e-66 257.3 545 42.6
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 1.3e-64 251.5 219 58.4
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-63 248.1 215 63.7
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 6.9e-63 245.7 220 57.7
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 5.8e-62 242.7 220 59.1
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 9.9e-62 241.9 158 82.9
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.0e-58 231.9 166 69.3
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.0e-58 230.3 165 69.1
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 5.1e-58 229.6 149 73.2
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.5e-57 228.0 148 73.6
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 3.3e-57 226.9 215 53.5
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.3e-56 224.9 148 69.6
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 6.2e-56 222.6 203 59.6
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 6.2e-56 222.6 575 30.6
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 1.1e-55 221.9 470 42.1
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.4e-55 221.5 152 70.4
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.1e-55 220.3 190 60.0
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.2e-53 214.2 179 63.1
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 5.5e-52 209.5 215 51.2
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 7.9e-51 205.7 158 74.7
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 1.3e-50 204.9 113 82.3
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 2.3e-50 204.1 229 51.5
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 1.6e-48 198.0 149 63.1
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 2.4e-47 194.1 113 76.1
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 1.4e-36 158.3 397 39.0
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.5e-36 156.4 86 80.2
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.5e-36 156.4 86 80.2
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 1.4e-34 151.8 500 33.8
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 5.3e-31 139.8 203 40.4
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 1.5e-30 138.3 224 35.3
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.4e-28 131.7 110 70.9
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.4e-28 131.7 110 70.9
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 4.2e-28 130.2 317 38.2
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 9.4e-28 129.0 421 36.3
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 3.6e-27 127.1 109 69.7
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.8e-26 124.8 111 64.0
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.5e-25 121.7 92 68.5
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 5.7e-25 119.8 213 37.1
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.4e-23 115.2 111 61.3
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 1.8e-23 114.8 121 61.2
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 1.5e-20 105.1 112 56.2
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 1.0e-18 99.0 57 77.2
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 1.5e-17 95.1 107 59.8
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 2.6e-17 94.4 102 51.0
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 8.2e-16 89.4 66 60.6
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.8e-13 80.5 67 59.7
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 5.0e-13 80.1 115 39.1
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 4.2e-12 77.0 158 37.3
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 4.7e-11 73.6 67 62.7
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 3.0e-10 70.9 76 52.6
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 5.2e-10 70.1 64 59.4
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 7.5e-09 66.2 41 73.2
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 1.2e-06 58.9 45 62.2


User provided reference genes

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