Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 5.1e-210 734.2 375 100.0
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 2.2e-144 516.2 379 69.1
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.1e-143 513.8 377 70.3
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 2.4e-143 512.7 377 69.0
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 5.4e-143 511.5 377 70.0
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 7.0e-143 511.1 376 70.2
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 1.2e-142 510.4 377 72.1
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 4.5e-142 508.4 377 70.0
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.3e-141 506.9 378 68.8
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 1.9e-140 503.1 377 68.2
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 4.2e-140 501.9 377 70.0
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 1.2e-139 500.4 377 69.8
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 2.1e-139 499.6 385 68.6
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 3.6e-139 498.8 377 69.0
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 1.8e-138 496.5 380 67.4
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 2.0e-137 493.0 377 68.7
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 2.0e-137 493.0 377 67.6
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 9.8e-137 490.7 379 67.3
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.1e-135 487.3 381 66.1
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.1e-135 485.7 379 65.4
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 4.1e-135 485.3 378 67.7
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 1.6e-134 483.4 377 66.3
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.5e-134 481.9 379 65.2
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.0e-133 480.7 379 65.2
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 1.5e-132 476.9 377 64.2
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 1.9e-132 476.5 375 68.5
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 1.2e-131 473.8 378 67.7
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 8.0e-131 471.1 383 66.1
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 1.0e-130 470.7 377 63.4
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 8.9e-130 467.6 377 62.1
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 2.6e-129 466.1 377 63.4
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 3.4e-129 465.7 377 62.6
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.2e-128 463.0 377 62.3
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 4.9e-128 461.8 373 65.7
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 5.4e-127 458.4 379 63.3
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 2.0e-126 456.4 377 63.4
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 3.5e-126 455.7 383 64.5
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 6.0e-126 454.9 377 61.8
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 8.6e-125 451.1 377 62.3
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 5.6e-124 448.4 378 60.3
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 7.3e-124 448.0 378 63.0
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 1.2e-123 447.2 379 62.5
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 4.7e-123 445.3 376 61.4
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 2.3e-122 443.0 377 62.3
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 5.2e-122 441.8 377 62.6
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 9.8e-121 437.6 377 63.1
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 2.9e-120 436.0 390 58.5
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 4.9e-120 435.3 374 62.3
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 3.2e-119 432.6 377 61.0
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 5.4e-119 431.8 377 61.8
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 5.4e-119 431.8 379 59.9
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 7.1e-119 431.4 374 61.8
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 1.0e-117 427.6 377 60.2
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 2.3e-117 426.4 382 61.8
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 3.0e-117 426.0 378 61.9
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 3.9e-117 425.6 381 61.2
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 1.2e-115 420.6 376 60.4
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 1.6e-115 420.2 378 60.8
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 2.1e-115 419.9 377 60.7
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.8e-114 416.8 380 60.8
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 3.1e-114 416.0 333 62.8
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 5.2e-114 415.2 382 58.4
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 2.6e-113 412.9 378 58.7
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 4.4e-113 412.1 379 58.8
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 7.5e-113 411.4 376 58.8
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 5.4e-111 405.2 379 58.8
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 1.0e-109 401.0 379 57.8
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 1.7e-109 400.2 375 58.7
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 5.1e-109 398.7 379 56.2
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 5.1e-109 398.7 379 56.2
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 8.6e-109 397.9 379 57.0
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 3.3e-108 396.0 379 55.7
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 9.6e-108 394.4 378 56.1
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 9.6e-108 394.4 398 56.3
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 2.1e-107 393.3 379 57.0
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 3.6e-107 392.5 375 57.9
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 4.7e-107 392.1 383 56.7
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 4.7e-107 392.1 383 55.4
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 6.2e-107 391.7 396 55.3
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 8.1e-107 391.3 383 55.6
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 6.8e-106 388.3 382 56.8
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 6.8e-106 388.3 383 55.9
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 3.4e-105 386.0 379 56.2
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 1.3e-104 384.0 324 63.0
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 2.9e-104 382.9 380 55.5
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 3.2e-103 379.4 377 55.2
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 2.7e-102 376.3 403 52.6
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 3.9e-101 372.5 376 54.3
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 1.1e-100 370.9 379 54.4
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 7.6e-97 358.2 385 49.6
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 1.9e-95 353.6 387 52.2
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 4.0e-90 335.9 283 62.5
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 4.0e-82 309.3 257 64.2
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 7.4e-76 288.5 317 54.9
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 7.4e-76 288.5 199 72.4
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 2.1e-75 287.0 261 57.5
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 2.2e-72 276.9 225 68.0
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 3.2e-71 273.1 392 42.3
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 1.3e-67 261.2 391 41.2
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.8e-61 240.7 379 42.0
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 3.1e-58 229.9 170 70.6
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 9.1e-58 228.4 176 66.5
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 1.6e-54 217.6 168 67.9
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 4.7e-54 216.1 235 51.5
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 3.9e-53 213.0 169 65.7
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 3.3e-52 209.9 376 38.3
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 6.3e-51 205.7 166 61.4
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 1.2e-46 191.4 275 41.5
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 1.2e-46 191.4 383 35.0
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 3.5e-41 173.3 161 57.1
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.4e-36 156.4 189 46.0
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.4e-36 156.4 189 45.5
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 3.8e-32 143.3 166 53.6
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 5.0e-32 142.9 159 49.1
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 5.0e-32 142.9 158 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 4.1e-26 123.2 142 51.4
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.4e-21 108.2 125 44.0
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.4e-21 108.2 92 54.3
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 3.0e-21 107.1 163 35.6
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 3.5e-17 93.6 72 62.5
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 5.0e-16 89.7 287 26.8
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 8.6e-16 89.0 81 55.6
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.3e-13 80.9 84 48.8
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.3e-13 80.9 82 45.1


User provided reference genes

Program Settings