Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 0.0e+00 1257.7 611 100.0
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 4.6e-309 1063.9 622 86.5
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 1.7e-202 709.9 622 60.3
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 3.7e-202 708.8 622 60.0
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 2.3e-199 699.5 623 59.4
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 2.1e-189 666.4 623 55.2
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 8.1e-189 664.5 620 55.3
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.9e-186 656.0 616 55.7
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.7e-184 649.4 621 56.5
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.7e-183 646.7 623 56.7
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.9e-182 643.3 632 54.7
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.9e-182 643.3 623 56.3
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 1.8e-180 636.7 625 53.0
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.6e-179 632.9 620 53.1
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 4.4e-179 632.1 626 54.3
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 9.9e-179 630.9 634 54.3
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.7e-178 630.2 634 54.1
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 7.1e-177 624.8 619 53.5
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.7e-176 622.9 608 56.9
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 7.1e-169 598.2 609 51.2
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 7.8e-168 594.7 622 52.6
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 2.9e-162 576.2 626 51.3
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.4e-161 573.2 648 50.5
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 7.1e-161 571.6 609 49.9
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-159 567.8 627 48.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 1.0e-159 567.8 621 50.4
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 2.3e-159 566.6 612 51.5
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-158 563.9 621 50.2
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.9e-158 563.5 611 49.4
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 9.6e-158 561.2 609 49.4
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 1.3e-157 560.8 611 49.6
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 4.8e-157 558.9 609 50.4
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 8.1e-157 558.1 609 50.4
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 7.6e-155 551.6 609 48.1
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 7.6e-155 551.6 609 48.1
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.7e-154 550.4 599 49.4
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 6.4e-154 548.5 609 49.3
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 5.5e-153 545.4 607 47.8
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 9.3e-153 544.7 620 47.7
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 2.5e-150 536.6 709 45.6
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.3e-149 534.3 607 47.0
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 4.8e-149 532.3 628 47.8
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 6.2e-149 531.9 609 48.6
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.4e-148 530.8 630 47.1
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 1.8e-148 530.4 608 49.3
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 1.5e-147 527.3 608 47.5
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 1.3e-146 524.2 624 47.9
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 2.9e-146 523.1 608 47.5
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 4.9e-146 522.3 608 47.0
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 6.5e-146 521.9 609 47.5
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 8.4e-146 521.5 607 47.6
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 3.5e-144 516.2 612 47.5
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 1.8e-143 513.8 625 46.6
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 6.7e-143 511.9 607 47.4
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.1e-142 511.1 617 47.2
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 1.5e-142 510.8 605 47.9
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 9.7e-142 508.1 606 47.7
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 9.7e-142 508.1 606 47.7
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 2.8e-141 506.5 608 47.4
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.1e-140 504.6 608 47.0
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 5.3e-140 502.3 619 46.5
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 6.9e-140 501.9 649 44.8
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 6.9e-140 501.9 611 45.7
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 9.0e-140 501.5 639 46.6
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.3e-138 497.7 611 44.8
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.4e-137 494.2 602 46.0
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.1e-136 490.3 607 45.6
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 2.7e-136 490.0 559 48.5
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 3.6e-136 489.6 612 45.3
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 1.0e-135 488.0 629 45.0
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 1.0e-135 488.0 629 45.0
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.1e-134 484.6 606 45.5
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 2.0e-134 483.8 615 44.1
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 5.7e-134 482.3 616 44.2
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 9.7e-134 481.5 539 50.3
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.7e-133 480.7 604 46.4
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.2e-133 480.3 611 44.8
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 9.1e-132 474.9 611 44.2
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.2e-130 470.3 608 43.8
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 2.2e-130 470.3 602 44.5
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 2.9e-130 469.9 624 42.8
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.1e-129 468.0 612 46.2
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 1.1e-129 468.0 623 44.3
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 3.2e-129 466.5 603 45.8
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 3.2e-129 466.5 606 44.1
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 9.4e-129 464.9 655 42.4
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.2e-128 464.5 622 44.7
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 3.6e-128 463.0 608 44.1
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 3.6e-128 463.0 601 45.6
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 1.0e-127 461.5 608 43.6
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 7.4e-126 455.3 604 45.5
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 4.8e-125 452.6 609 43.2
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.1e-124 451.4 601 45.6
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 9.1e-124 448.4 604 44.0
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 5.5e-121 439.1 618 41.3
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 5.5e-121 439.1 605 43.5
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 5.5e-121 439.1 605 43.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 5.5e-121 439.1 605 43.5
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 1.2e-120 438.0 541 45.8
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 2.1e-120 437.2 602 43.9
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 2.1e-120 437.2 602 43.9
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 2.3e-119 433.7 609 43.2
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.5e-118 431.0 553 43.6
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.8e-117 426.8 550 44.5
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 6.3e-117 425.6 613 39.5
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 4.1e-116 422.9 639 41.6
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 9.1e-116 421.8 623 40.1
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 4.2e-113 412.9 502 46.0
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.8e-111 407.5 565 42.5
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 5.0e-106 389.4 361 56.2
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.4e-103 381.3 580 40.7
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.2e-102 378.3 610 38.9
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 4.8e-101 372.9 540 40.2
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 5.9e-91 339.3 410 46.6
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.0e-90 336.3 604 38.6
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.2e-88 331.6 500 40.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.5e-83 313.5 351 47.6
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 1.1e-73 282.0 623 34.2
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 8.1e-64 249.2 310 47.1
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.2e-59 235.3 285 44.2
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 6.9e-55 219.5 304 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 2.0e-54 218.0 712 26.8
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 2.1e-51 208.0 286 38.8
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 2.5e-49 201.1 254 46.1
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 2.4e-47 194.5 181 54.1
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 6.9e-47 193.0 249 46.2
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 2.2e-45 188.0 259 43.2
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 3.8e-45 187.2 180 56.7
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.4e-39 168.7 275 38.9
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 3.2e-36 157.5 470 27.4
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 3.5e-35 154.1 361 29.6
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 5.1e-34 150.2 392 27.8
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.1e-33 149.1 118 65.3
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 2.5e-33 147.9 242 36.8
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.6e-33 146.0 98 75.5
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.6e-33 146.0 100 74.0
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 9.6e-33 146.0 201 41.3
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 3.7e-32 144.1 114 64.0
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 3.1e-31 141.0 127 50.4
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 4.5e-30 137.1 164 45.1
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 4.5e-30 137.1 118 56.8
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-29 136.0 94 73.4
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 2.9e-29 134.4 118 55.1
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 5.5e-28 130.2 270 34.4
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.2e-27 129.0 296 34.5
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.2e-22 112.5 70 71.4
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 2.2e-21 108.2 140 46.4
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 3.8e-21 107.5 162 38.3
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 7.4e-17 93.2 457 24.3
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.3e-15 87.0 81 58.0
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 5.3e-15 87.0 63 69.8
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.2e-13 81.6 49 71.4
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.2e-13 81.6 58 72.4
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 6.7e-10 70.1 63 63.5
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.5e-09 68.9 161 31.7
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 7.4e-09 66.6 241 25.7
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.8e-08 63.9 58 51.7
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 7.0e-07 60.1 137 25.5
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 9.1e-07 59.7 141 27.0
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 2.0e-06 58.5 90 45.6


User provided reference genes

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