Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 7.4e-290 1000.0 558 100.0
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 1.7e-206 723.0 510 73.3
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 5.6e-189 664.8 586 61.8
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.8e-174 616.7 540 61.9
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.5e-173 613.6 530 62.8
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 4.8e-172 608.6 589 58.4
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 4.5e-170 602.1 538 61.0
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.2e-169 599.7 538 61.0
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 2.1e-167 593.2 532 60.7
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 3.6e-167 592.4 486 63.8
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 6.7e-166 588.2 528 59.5
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.5e-162 577.0 562 57.3
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 5.9e-162 575.1 557 57.5
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 1.3e-161 573.9 593 54.6
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.2e-159 567.4 555 56.8
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 2.3e-158 563.1 579 54.4
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 7.4e-157 558.1 489 63.4
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 9.7e-157 557.8 560 56.6
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 1.1e-155 554.3 541 55.6
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 4.5e-154 548.9 551 55.2
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.9e-152 543.5 567 54.0
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 4.2e-152 542.3 551 54.8
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 6.1e-151 538.5 533 55.7
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 8.0e-151 538.1 555 54.2
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 8.0e-151 538.1 555 54.2
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 8.0e-151 538.1 561 54.0
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 4.4e-149 532.3 588 50.3
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 2.8e-148 529.6 615 49.8
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 4.8e-148 528.9 590 51.7
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 1.1e-147 527.7 510 57.3
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 2.4e-147 526.6 623 50.1
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 1.6e-143 513.8 603 50.1
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.4e-142 510.8 681 46.3
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.8e-142 510.4 662 46.1
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 6.8e-142 508.4 646 47.2
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 9.8e-141 504.6 561 51.0
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 2.2e-140 503.4 612 48.0
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 2.2e-140 503.4 565 51.2
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 4.8e-140 502.3 616 47.9
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.8e-139 500.4 557 51.9
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.4e-139 498.8 552 51.8
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 5.4e-139 498.8 567 49.4
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 7.0e-139 498.4 564 50.7
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 1.2e-138 497.7 622 46.9
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 2.0e-138 496.9 622 48.2
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 2.0e-138 496.9 690 44.9
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 3.8e-137 492.7 665 45.0
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 5.0e-137 492.3 569 51.3
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-136 490.3 706 44.5
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.2e-136 489.2 623 46.9
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 4.2e-136 489.2 704 44.5
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 7.2e-136 488.4 588 49.1
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 7.2e-136 488.4 623 46.4
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 1.2e-135 487.6 507 55.8
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.8e-134 483.8 547 51.0
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 3.0e-134 483.0 601 47.4
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 5.2e-134 482.3 564 50.4
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 6.8e-134 481.9 747 41.9
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.8e-134 481.9 561 49.4
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 2.0e-133 480.3 710 42.4
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.6e-133 479.9 588 48.5
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.6e-133 479.9 597 47.7
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 7.5e-133 478.4 559 49.2
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.3e-132 477.6 738 42.1
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 2.8e-132 476.5 602 47.2
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.4e-131 474.2 639 45.2
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 7.0e-131 471.9 629 45.3
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 7.0e-131 471.9 660 45.0
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.6e-130 470.7 595 46.6
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 4.5e-130 469.2 672 42.7
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 7.7e-130 468.4 570 46.7
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.0e-129 465.7 622 46.1
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.5e-128 463.4 607 46.0
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 2.5e-128 463.4 561 49.0
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 7.2e-128 461.8 544 49.6
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 7.2e-128 461.8 419 60.9
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.6e-127 460.7 515 51.3
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.2e-125 454.5 553 47.7
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 1.2e-125 454.5 710 41.0
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 2.2e-124 450.3 596 46.1
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 4.1e-123 446.0 643 43.5
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 5.4e-123 445.7 597 46.1
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 5.4e-123 445.7 575 46.3
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 7.0e-123 445.3 738 39.4
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 1.2e-122 444.5 588 46.6
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 2.3e-121 440.3 547 47.2
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 2.5e-120 436.8 434 56.7
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 5.6e-120 435.6 723 39.1
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 9.5e-120 434.9 597 45.6
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.8e-118 430.6 907 34.2
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.2e-117 427.9 630 43.7
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 7.5e-117 425.2 634 43.4
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 7.5e-117 425.2 651 43.2
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 9.8e-117 424.9 566 46.5
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.3e-110 403.7 497 45.5
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 7.8e-106 388.7 732 35.7
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.1e-103 380.6 270 73.7
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 5.4e-99 365.9 549 42.4
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.1e-94 351.7 234 76.9
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.8e-94 350.9 452 46.9
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 6.8e-94 349.0 453 47.2
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.9e-81 306.6 202 74.8
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.9e-80 304.3 306 54.9
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-75 288.5 449 39.9
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.8e-73 281.2 458 38.2
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 6.7e-73 279.3 432 40.0
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.0e-70 268.9 146 93.8
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 4.5e-69 266.5 624 32.4
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 1.3e-68 265.0 193 68.9
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.2e-68 264.2 206 68.4
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 2.9e-68 263.8 569 34.6
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 6.5e-68 262.7 208 63.9
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 7.4e-64 249.2 667 29.1
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 2.1e-58 231.1 197 61.4
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.5e-53 214.9 406 36.7
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 2.2e-47 194.5 252 46.4
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 5.9e-45 186.4 185 54.6
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 2.4e-38 164.5 191 41.4
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.0e-32 144.8 100 71.0
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-32 144.4 181 47.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 2.7e-29 134.4 180 41.7
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 4.5e-29 133.7 306 32.7
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 1.3e-28 132.1 231 37.7
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 3.8e-28 130.6 247 37.7
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 7.5e-24 116.3 194 40.2
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 7.5e-24 116.3 194 40.2
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 7.0e-22 109.8 146 41.8
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.0e-20 105.9 68 73.5
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 5.0e-20 103.6 80 63.8
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 2.5e-19 101.3 142 40.1
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 8.0e-18 96.3 134 44.0
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.2e-13 82.4 114 43.9
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 1.0e-12 79.3 48 77.1
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.0e-12 77.0 61 63.9
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 8.6e-12 76.3 272 27.2
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.5e-11 75.5 99 35.4
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.2e-10 72.4 277 27.4
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 3.0e-09 67.8 124 35.5
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.0e-09 67.8 126 34.9
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 5.2e-09 67.0 284 25.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 6.8e-09 66.6 49 67.3
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 1.2e-08 65.9 107 36.4
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.5e-08 65.5 122 35.2
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.0e-08 65.1 122 34.4
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 2.0e-08 65.1 56 57.1
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 2.0e-08 65.1 168 29.8
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.6e-08 64.7 176 31.2
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 2.6e-08 64.7 122 34.4
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.6e-08 64.7 122 34.4
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 2.6e-08 64.7 123 34.1
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 3.4e-08 64.3 76 44.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 5.7e-08 63.5 122 32.0
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.7e-07 62.0 97 40.2
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 2.2e-07 61.6 118 34.7
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 2.2e-07 61.6 163 29.4
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 3.7e-07 60.8 163 31.9
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 3.7e-07 60.8 96 37.5
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 3.7e-07 60.8 193 31.6
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 4.9e-07 60.5 179 27.4
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 4.9e-07 60.5 123 34.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 6.4e-07 60.1 118 36.4
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 6.4e-07 60.1 129 34.9
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 8.3e-07 59.7 117 32.5
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 8.3e-07 59.7 118 34.7
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.1e-06 59.3 122 30.3
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.4e-06 58.9 122 34.4
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.8e-06 58.5 122 29.5
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 1.8e-06 58.5 220 27.7
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.8e-06 58.5 120 34.2
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.8e-06 58.5 120 32.5
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.4e-06 58.2 112 38.4
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.4e-06 58.2 112 38.4
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 2.4e-06 58.2 209 30.6
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 4.1e-06 57.4 118 33.1
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 4.1e-06 57.4 123 34.1
PSO782G1992 Papaver somniferum HOM05D005415 ORTHO05D006242 4.1e-06 57.4 149 29.5
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 4.1e-06 57.4 97 40.2
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 5.4e-06 57.0 64 48.4
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 5.4e-06 57.0 101 41.6
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 7.0e-06 56.6 220 26.8
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 9.2e-06 56.2 118 33.9
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 9.2e-06 56.2 129 31.0


User provided reference genes

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