Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.2e-76 287.7 154 100.0
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 2.8e-66 255.4 154 81.8
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.4e-65 252.3 154 81.2
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.1e-61 239.2 157 82.8
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 9.8e-59 230.3 154 74.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 6.3e-58 227.6 127 86.6
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 6.3e-58 227.6 154 74.7
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 8.3e-58 227.3 127 85.8
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.4e-57 226.5 127 86.6
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 1.8e-57 226.1 154 73.4
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 3.2e-57 225.3 154 74.0
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.2e-57 225.3 153 73.2
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.2e-57 225.3 153 73.2
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 4.1e-57 224.9 127 85.8
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 5.4e-57 224.6 128 84.4
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 7.0e-57 224.2 127 85.0
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 9.2e-57 223.8 128 83.6
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.6e-56 223.0 153 72.5
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.6e-56 223.0 154 78.6
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.7e-56 222.2 127 84.3
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 7.8e-56 220.7 127 84.3
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 1.0e-55 220.3 156 73.1
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.3e-55 219.9 155 74.8
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.7e-55 219.5 123 84.6
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 2.3e-55 219.2 141 78.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 2.9e-55 218.8 142 77.5
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 3.9e-55 218.4 157 73.2
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 6.6e-55 217.6 126 81.7
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.1e-54 216.9 157 74.5
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 1.5e-54 216.5 128 83.6
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.5e-54 216.5 154 73.4
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.9e-54 216.1 153 71.9
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 4.3e-54 214.9 128 82.8
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.3e-54 214.2 126 82.5
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 7.3e-54 214.2 154 72.7
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 9.5e-54 213.8 128 82.0
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 1.2e-53 213.4 157 73.2
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.2e-53 213.4 126 81.7
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.2e-53 213.4 156 71.8
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 2.1e-53 212.6 142 79.6
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.1e-53 212.6 158 70.9
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 2.8e-53 212.2 159 71.1
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 2.8e-53 212.2 142 81.0
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 2.8e-53 212.2 142 80.3
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.6e-53 211.8 125 82.4
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 4.7e-53 211.5 127 78.7
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.1e-53 211.1 126 81.0
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 6.1e-53 211.1 125 78.4
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.0e-52 210.3 160 73.8
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.8e-52 209.5 126 81.7
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.8e-52 209.5 132 79.5
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.3e-52 209.1 127 81.1
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 2.3e-52 209.1 127 81.1
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 5.2e-52 208.0 127 80.3
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 8.9e-52 207.2 154 68.2
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.2e-51 206.8 127 80.3
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 1.2e-51 206.8 125 81.6
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.2e-51 206.8 154 68.2
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.5e-51 206.5 152 69.1
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 2.6e-51 205.7 141 72.3
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 2.6e-51 205.7 128 80.5
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 5.8e-51 204.5 125 82.4
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.7e-50 203.0 125 81.6
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 1.7e-50 203.0 154 66.2
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.9e-50 202.2 124 80.6
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 2.9e-50 202.2 121 81.8
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 3.7e-50 201.8 125 76.8
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 4.9e-50 201.4 127 77.2
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.9e-50 201.4 127 77.2
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.4e-50 201.1 126 78.6
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 6.4e-50 201.1 124 80.6
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 6.4e-50 201.1 125 76.0
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.1e-49 200.3 125 79.2
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.1e-49 200.3 119 79.8
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.4e-49 199.9 127 76.4
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.9e-49 199.5 140 69.3
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.9e-49 199.5 140 69.3
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 4.1e-49 198.4 125 75.2
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 4.1e-49 198.4 125 75.2
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 5.4e-49 198.0 121 76.0
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 9.2e-49 197.2 158 65.8
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.2e-48 196.8 125 78.4
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.6e-48 196.4 127 76.4
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.6e-48 196.4 125 74.4
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-48 196.4 127 77.2
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-48 196.4 127 77.2
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.0e-48 196.1 120 77.5
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.0e-48 196.1 176 63.1
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.7e-48 195.7 118 81.4
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 3.5e-48 195.3 126 77.0
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 4.6e-48 194.9 126 77.8
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 6.0e-48 194.5 127 75.6
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 6.0e-48 194.5 126 77.8
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 6.0e-48 194.5 121 79.3
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 6.0e-48 194.5 121 79.3
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 6.0e-48 194.5 121 79.3
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 7.8e-48 194.1 125 78.4
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 7.8e-48 194.1 116 82.8
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 7.8e-48 194.1 125 74.4
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.0e-47 193.7 121 77.7
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.7e-47 193.0 121 78.5
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 1.7e-47 193.0 121 74.4
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.0e-47 191.4 121 76.9
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 5.0e-47 191.4 154 64.9
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 6.6e-47 191.0 119 75.6
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.1e-46 190.3 122 78.7
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.1e-46 190.3 120 75.8
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.5e-46 189.9 106 86.8
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.9e-46 189.5 105 87.6
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.9e-46 189.5 123 77.2
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 2.5e-46 189.1 126 70.6
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 7.3e-46 187.6 134 71.6
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 2.1e-45 186.0 181 59.1
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 3.6e-45 185.3 140 65.7
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 6.2e-45 184.5 120 75.0
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 6.2e-45 184.5 121 73.6
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 6.2e-45 184.5 135 71.9
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 6.8e-44 181.0 121 74.4
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 8.9e-44 180.6 116 76.7
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.2e-43 180.3 111 76.6
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.6e-43 179.1 152 63.2
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.4e-43 178.7 115 76.5
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.5e-43 177.6 105 81.0
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 2.2e-42 176.0 115 76.5
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 8.3e-42 174.1 111 74.8
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.3e-42 174.1 120 72.5
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 1.1e-41 173.7 155 58.1
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.9e-41 172.9 125 69.6
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.4e-41 172.6 124 71.8
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 3.2e-41 172.2 105 81.0
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 5.4e-41 171.4 154 59.7
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.5e-40 168.7 125 71.2
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.0e-39 167.2 127 68.5
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.7e-39 166.4 118 66.1
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 5.1e-39 164.9 102 75.5
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 2.5e-38 162.5 91 83.5
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 7.3e-38 161.0 107 76.6
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.2e-37 157.9 127 64.6
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.2e-37 157.9 127 64.6
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.2e-37 157.9 127 64.6
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.8e-36 156.4 95 77.9
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 3.4e-35 152.1 114 65.8
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.3e-34 150.2 119 60.5
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.3e-34 150.2 128 62.5
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 2.9e-34 149.1 91 75.8
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 4.9e-34 148.3 99 72.7
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.3e-31 140.2 76 90.8
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 8.1e-29 131.0 107 65.4
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 6.8e-28 127.9 133 52.6
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 3.0e-23 112.5 59 88.1
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 6.6e-23 111.3 126 46.8
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 2.1e-21 106.3 63 81.0
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.8e-21 105.9 97 59.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 6.2e-21 104.8 60 80.0
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 1.4e-20 103.6 74 74.3
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 4.0e-20 102.1 82 65.9
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 9.0e-20 100.9 75 64.0
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.2e-19 100.5 61 80.3
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 7.6e-19 97.8 75 62.7
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 9.9e-19 97.4 75 62.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 6.6e-15 84.7 47 83.0
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.1e-12 77.4 132 35.6
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 4.9e-10 68.6 113 39.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.4e-09 67.0 146 30.8
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 2.7e-08 62.8 39 71.8


User provided reference genes

Program Settings