Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1843.9 932 100.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1555.4 933 84.4
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1543.9 932 83.0
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1483.0 932 80.6
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1479.2 917 81.7
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1460.7 932 80.6
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1439.1 935 77.3
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1432.2 935 77.5
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1432.2 934 77.8
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1428.7 948 77.1
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1427.2 935 77.4
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1425.6 936 77.1
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1423.3 934 77.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1417.5 936 77.0
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1417.1 936 76.7
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 933 75.7
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1412.9 942 77.0
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 942 77.0
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1410.2 936 76.8
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1409.4 912 77.3
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1405.2 933 75.9
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1401.0 925 76.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1396.3 952 75.8
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1395.9 912 77.1
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1390.6 938 75.5
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1388.2 932 76.2
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1387.9 919 76.2
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1387.9 935 74.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1387.1 957 74.8
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1384.0 912 76.4
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1377.8 916 76.6
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1372.8 935 74.2
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 935 74.3
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 938 74.3
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1364.0 940 74.9
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1363.2 928 75.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 932 73.7
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 911 76.1
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1359.7 985 71.5
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1354.3 914 75.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1352.4 912 74.9
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1345.9 912 74.8
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1345.5 940 73.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 939 72.8
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 959 71.4
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1342.4 940 72.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1342.0 942 72.3
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1341.6 939 73.8
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1340.5 939 73.9
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 928 73.8
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 935 73.7
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1335.9 912 74.5
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 943 73.0
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 943 73.0
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1333.5 921 73.2
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1331.6 935 72.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1331.2 914 74.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1330.5 913 74.0
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1330.1 957 71.9
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1329.7 913 73.8
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1327.0 931 71.9
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1325.5 934 74.0
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1321.6 940 73.0
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1320.8 932 74.1
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1318.1 940 72.9
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1316.2 933 72.5
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1315.8 941 72.7
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1315.4 941 72.9
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1315.1 918 72.4
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1313.5 929 72.7
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1312.7 941 72.8
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1311.2 934 71.4
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1309.7 933 72.1
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1305.4 942 72.6
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 917 72.8
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1302.0 913 73.7
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1301.6 972 69.3
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1297.3 938 71.0
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1290.4 933 71.5
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1290.0 973 67.9
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1288.1 933 70.1
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1286.9 923 71.6
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1286.6 923 70.3
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1285.0 933 71.3
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1284.6 933 71.1
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1283.9 935 70.1
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1282.7 943 69.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1281.9 934 70.6
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1279.6 922 71.5
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1275.4 933 71.1
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1272.7 925 71.4
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1265.0 932 70.2
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1262.7 936 70.5
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1261.5 933 69.7
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1260.0 933 70.2
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1257.7 934 69.6
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1255.0 936 70.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1253.0 935 69.6
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1253.0 935 69.5
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1249.6 936 69.8
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1243.4 940 68.1
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1240.3 913 68.8
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1233.0 911 70.5
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1230.3 940 68.3
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1229.2 799 78.1
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1225.3 923 69.7
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1224.5 928 67.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1218.4 935 68.1
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1216.1 935 67.9
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1211.8 937 67.1
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1210.7 800 77.6
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1207.6 934 67.3
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1195.6 915 68.2
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1194.9 897 69.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1192.2 951 66.0
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1192.2 928 67.2
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1185.6 825 74.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1171.4 938 65.4
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1165.2 933 66.7
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1164.1 937 65.8
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1161.0 925 66.8
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1143.6 870 68.5
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1135.9 815 71.0
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1109.7 918 64.6
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1100.1 950 62.1
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1080.5 933 63.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.7e-310 1069.3 933 62.5
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 7.7e-308 1060.4 897 63.0
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 1.0e-296 1023.5 965 57.8
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 7.7e-292 1007.3 845 63.8
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 4.2e-290 1001.5 928 60.9
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 6.8e-272 941.0 903 56.9
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.9e-269 932.9 705 70.4
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 7.3e-258 894.4 631 74.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.2e-249 867.1 677 69.3
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.4e-247 859.0 914 52.6
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 6.0e-236 821.6 935 50.2
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.4e-232 809.7 938 48.8
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.9e-230 802.7 937 48.5
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.4e-229 799.7 943 48.6
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 8.7e-219 764.6 778 53.7
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 4.1e-208 729.2 737 54.5
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 5.9e-199 698.7 656 58.1
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 6.1e-188 662.1 873 44.8
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.8e-174 616.3 629 59.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 8.9e-171 605.1 744 50.7
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 6.4e-161 572.4 567 56.4
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 7.3e-157 558.9 608 52.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.2e-151 541.6 874 38.4
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 5.6e-141 506.1 587 51.3
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 4.7e-140 503.1 550 52.5
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 4.2e-136 490.0 436 59.9
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 6.6e-134 482.6 1084 33.2
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 3.5e-119 433.7 544 47.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 3.8e-113 413.7 571 45.2
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.2e-79 302.4 187 81.3
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 4.4e-69 267.3 244 57.0
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.5e-61 242.3 147 80.3
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.6e-61 241.5 216 56.5
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 8.3e-60 236.5 238 55.9
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 9.1e-59 233.0 178 65.7
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 5.9e-58 230.3 914 26.8
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 4.5e-50 204.1 161 63.4
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 7.8e-50 203.4 918 24.1
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.6e-49 199.9 173 55.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 2.1e-47 195.3 156 63.5
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 6.8e-46 190.3 145 59.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.0e-45 188.7 212 44.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.0e-42 178.7 480 29.4
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 2.6e-37 161.8 179 52.0
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 6.8e-30 137.1 128 55.5
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.1e-25 120.9 96 56.2
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.1e-25 120.9 96 56.2
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 9.6e-24 116.7 112 53.6
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 8.1e-15 87.0 63 74.6
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.1e-14 86.7 124 44.4
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.3e-12 79.7 66 57.6


User provided reference genes

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