Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1400 Trochodendron aralioides HOM05D003384 ORTHO05D005024 2.0e-109 399.1 194 100.0
TAR633G2052 Trochodendron aralioides HOM05D003384 ORTHO05D005024 5.0e-52 208.4 93 97.8
Aqoxy5G02953 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 4.4e-48 195.3 93 89.2
Thecc.05G055600 Theobroma cacao HOM05D003384 ORTHO05D005024 1.3e-47 193.7 96 89.6
Aqoxy1G00556 Aquilegia oxysepala HOM05D003384 ORTHO05D005024 1.7e-47 193.4 93 88.2
Cpa.g.c38225 Carica papaya HOM05D003384 ORTHO05D005024 3.7e-47 192.2 93 90.3
COL.COLO4_27063 Corchorus olitorius HOM05D003384 ORTHO05D005024 3.7e-47 192.2 96 88.5
Dinv42277 Davidia involucrata HOM05D003384 ORTHO05D005024 3.7e-47 192.2 93 90.3
Duzib093G0913 Durio zibethinus HOM05D003384 ORTHO05D005024 3.7e-47 192.2 96 88.5
Gohir.A04G076000 Gossypium hirsutum HOM05D003384 ORTHO05D005024 3.7e-47 192.2 96 88.5
Gorai.009G419700 Gossypium raimondii HOM05D003384 ORTHO05D005024 3.7e-47 192.2 96 88.5
Actinidia02926 Actinidia chinensis HOM05D003384 ORTHO05D005024 8.3e-47 191.0 93 90.3
ClCG07G004570 Citrullus lanatus HOM05D003384 ORTHO05D005024 8.3e-47 191.0 93 86.0
Gohir.D04G115100 Gossypium hirsutum HOM05D003384 ORTHO05D005024 8.3e-47 191.0 96 88.5
Potri.010G200200 Populus trichocarpa HOM05D003384 ORTHO05D005024 1.4e-46 190.3 93 89.2
CSS0027778 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 1.8e-46 189.9 93 89.2
MELO3C018382.2 Cucumis melo HOM05D003384 ORTHO05D005024 2.4e-46 189.5 93 89.2
MD03G1203100 Malus domestica HOM05D003384 ORTHO05D005024 2.4e-46 189.5 93 89.2
Manes.10G027300 Manihot esculenta HOM05D003384 ORTHO05D005024 2.4e-46 189.5 93 88.2
TWI18G1054 Tripterygium wilfordii HOM05D003384 ORTHO05D005024 2.4e-46 189.5 96 85.4
Ciclev10030516m.g Citrus clementina HOM05D003384 ORTHO05D005024 3.2e-46 189.1 93 89.2
Eucgr.I00206 Eucalyptus grandis HOM05D003384 ORTHO05D005024 4.1e-46 188.7 93 89.2
CsaV3_5G010490 Cucumis sativus L. HOM05D003384 ORTHO05D005024 5.4e-46 188.3 93 88.2
MD04G1022300 Malus domestica HOM05D003384 ORTHO05D005024 5.4e-46 188.3 93 88.2
Migut.F00756 Erythranthe guttata HOM05D003384 ORTHO05D005024 7.0e-46 188.0 96 85.4
MBI14_g11677_MAGBIO Magnolia biondii HOM05D003384 ORTHO05D005024 7.0e-46 188.0 96 83.3
Prupe.8G024000 Prunus persica HOM05D003384 ORTHO05D005024 7.0e-46 188.0 93 88.2
QL08p061129 Quercus lobata HOM05D003384 ORTHO05D005024 7.0e-46 188.0 93 88.2
Rhsim08G0242600 Rhododendron simsii HOM05D003384 ORTHO05D005024 7.0e-46 188.0 93 88.2
SalBow6G5425 Salvia bowleyana HOM05D003384 ORTHO05D005024 7.0e-46 188.0 93 88.2
unitig_0.g1015 Utricularia gibba HOM05D003384 ORTHO05D005024 7.0e-46 188.0 93 87.1
CSS0047277 Camellia sinensis var. sinensis HOM05D003384 ORTHO05D005024 9.2e-46 187.6 93 89.2
Hma1.2p1_0998F.1_g246010 Hydrangea macrophylla HOM05D003384 ORTHO05D005024 9.2e-46 187.6 96 83.3
Prupe.1G542100 Prunus persica HOM05D003384 ORTHO05D005024 9.2e-46 187.6 93 87.1
Sopen02g021650 Solanum pennellii HOM05D003384 ORTHO05D005024 9.2e-46 187.6 93 86.0
PGSC0003DMG400010235 Solanum tuberosum HOM05D003384 ORTHO05D005024 9.2e-46 187.6 93 86.0
BcaC08g46858 Brassica carinata HOM05D003384 ORTHO05D005024 1.2e-45 187.2 99 83.8
A07p40090 Brassica napus HOM05D003384 ORTHO05D005024 1.2e-45 187.2 99 83.8
C06p48450 Brassica napus HOM05D003384 ORTHO05D005024 1.2e-45 187.2 99 83.8
BolC6t39873H Brassica oleracea HOM05D003384 ORTHO05D005024 1.2e-45 187.2 99 83.8
BraA07t31553Z Brassica rapa HOM05D003384 ORTHO05D005024 1.2e-45 187.2 99 83.8
Gohir.A06G008900 Gossypium hirsutum HOM05D003384 ORTHO05D005024 1.2e-45 187.2 96 86.5
Rhsim10G0184100 Rhododendron simsii HOM05D003384 ORTHO05D005024 1.6e-45 186.8 93 87.1
Sabra10G0154400 Salix brachista HOM05D003384 ORTHO05D005024 1.6e-45 186.8 91 90.1
Oeu001502.2 Olea europaea HOM05D003384 ORTHO05D005024 2.0e-45 186.4 93 87.1
A07p29480 Brassica napus HOM05D003384 ORTHO05D005024 2.7e-45 186.0 93 87.1
C06p33470 Brassica napus HOM05D003384 ORTHO05D005024 2.7e-45 186.0 93 87.1
BolC6t38461H Brassica oleracea HOM05D003384 ORTHO05D005024 2.7e-45 186.0 93 87.1
BraA07t30586Z Brassica rapa HOM05D003384 ORTHO05D005024 2.7e-45 186.0 93 87.1
Solyc02g076720.3 Solanum lycopersicum HOM05D003384 ORTHO05D005024 3.5e-45 185.7 93 84.9
Cfa001433 Carpinus fangiana HOM05D003384 ORTHO05D005024 4.6e-45 185.3 93 87.1
PSO837G0041 Papaver somniferum HOM05D003384 ORTHO05D005024 4.6e-45 185.3 93 87.1
RcHm_v2.0_Chr7g0204141 Rosa chinensis HOM05D003384 ORTHO05D005024 4.6e-45 185.3 93 88.2
AT1G74260 Arabidopsis thaliana HOM05D003384 ORTHO05D005024 5.9e-45 184.9 93 86.0
ClCG07G004540 Citrullus lanatus HOM05D003384 ORTHO05D005024 5.9e-45 184.9 93 86.0
Cc04_g11240 Coffea canephora HOM05D003384 ORTHO05D005024 5.9e-45 184.9 93 86.0
Haze_17110 Corylus avellana HOM05D003384 ORTHO05D005024 5.9e-45 184.9 93 86.0
Lj1C941G12 Lonicera japonica HOM05D003384 ORTHO05D005024 5.9e-45 184.9 99 82.8
Carub.0002s2105 Capsella rubella HOM05D003384 ORTHO05D005024 7.8e-45 184.5 93 86.0
CiPaw.01G290900 Carya illinoinensis HOM05D003384 ORTHO05D005024 7.8e-45 184.5 93 87.1
Thhalv10018011m.g Eutrema salsugineum HOM05D003384 ORTHO05D005024 7.8e-45 184.5 93 86.0
Sp5g29440 Schrenkiella parvula HOM05D003384 ORTHO05D005024 7.8e-45 184.5 93 86.0
vmacro20478 Vaccinium macrocarpon HOM05D003384 ORTHO05D005024 7.8e-45 184.5 90 87.8
CARHR067520 Cardamine hirsuta HOM05D003384 ORTHO05D005024 1.0e-44 184.1 93 86.0
Cfa014646 Carpinus fangiana HOM05D003384 ORTHO05D005024 1.0e-44 184.1 93 86.0
AL2G34140 Arabidopsis lyrata HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 84.9
FvH4_5g19530 Fragaria vesca HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 87.1
FAN04G2139 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 87.1
FAN08G1276 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 87.1
FAN13G0754 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 87.1
FAN18G2272 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 87.1
FAN18G2911 Fragaria x ananassa HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 87.1
Sed0002627 Sechium edule HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 84.9
THA.LOC104816583 Tarenaya hassleriana HOM05D003384 ORTHO05D005024 1.3e-44 183.7 93 84.9
arahy.Tifrunner.gnm1.ann1.Z31J18 Arachis hypogaea HOM05D003384 ORTHO05D005024 2.3e-44 183.0 93 84.9
EL10Ac2g04005 Beta vulgaris HOM05D003384 ORTHO05D005024 2.3e-44 183.0 98 81.6
HanXRQChr05g0161141 Helianthus annuus HOM05D003384 ORTHO05D005024 2.3e-44 183.0 96 82.3
Lj8C80T4 Lonicera japonica HOM05D003384 ORTHO05D005024 2.3e-44 183.0 93 86.0
ATR0580G036 Amborella trichopoda HOM05D003384 ORTHO05D005024 3.0e-44 182.6 99 77.8
CAN.G370.86 Capsicum annuum HOM05D003384 ORTHO05D005024 3.9e-44 182.2 93 82.8
DCAR_011724 Daucus carota HOM05D003384 ORTHO05D005024 3.9e-44 182.2 93 84.9
SalBow6G5500 Salvia bowleyana HOM05D003384 ORTHO05D005024 3.9e-44 182.2 93 86.0
Lalb_Chr18g0053121 Lupinus albus HOM05D003384 ORTHO05D005024 5.0e-44 181.8 93 84.9
Peaxi162Scf00668g00439 Petunia axillaris HOM05D003384 ORTHO05D005024 5.0e-44 181.8 93 84.9
Glyma.18G036300 Glycine max HOM05D003384 ORTHO05D005024 8.6e-44 181.0 93 82.8
PSO782G4051 Papaver somniferum HOM05D003384 ORTHO05D005024 8.6e-44 181.0 93 84.9
PGR004G0663 Punica granatum HOM05D003384 ORTHO05D005024 8.6e-44 181.0 93 83.9
Zm00001eb055170 Zea mays HOM05D003384 ORTHO05D005024 8.6e-44 181.0 96 78.1
HanXRQChr08g0232581 Helianthus annuus HOM05D003384 ORTHO05D005024 1.1e-43 180.6 93 83.9
Lalb_Chr15g0084621 Lupinus albus HOM05D003384 ORTHO05D005024 1.1e-43 180.6 93 82.8
Nitab4.5_0000333g0100 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.1e-43 180.6 93 81.7
Nitab4.5_0001169g0010 Nicotiana tabacum HOM05D003384 ORTHO05D005024 1.1e-43 180.6 93 81.7
PSO478G4441 Papaver somniferum HOM05D003384 ORTHO05D005024 1.9e-43 179.9 93 83.9
Os01g0888500 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 2.5e-43 179.5 96 77.1
Psat7g023040 Pisum sativum HOM05D003384 ORTHO05D005024 2.5e-43 179.5 93 81.7
Sc09g0005970 Simmondsia chinensis HOM05D003384 ORTHO05D005024 3.3e-43 179.1 93 83.9
PGSC0003DMG400025849 Solanum tuberosum HOM05D003384 ORTHO05D005024 3.3e-43 179.1 93 81.7
VMungo1309G0201 Vigna mungo HOM05D003384 ORTHO05D005024 3.3e-43 179.1 93 81.7
Ah.03g145450 Amaranthus hybridus HOM05D003384 ORTHO05D005024 4.3e-43 178.7 93 84.9
AUR62042439 Chenopodium quinoa HOM05D003384 ORTHO05D005024 4.3e-43 178.7 93 84.9
Ca_17447_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 4.3e-43 178.7 93 81.7
Ca_30022_v3 Cicer arietinum L. HOM05D003384 ORTHO05D005024 4.3e-43 178.7 93 81.7
Os05g0104650 Oryza sativa ssp. japonica HOM05D003384 ORTHO05D005024 4.3e-43 178.7 96 77.1
TPR.G25489 Trifolium pratense HOM05D003384 ORTHO05D005024 4.3e-43 178.7 93 81.7
CDE05G1365 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 5.6e-43 178.3 96 77.1
ECA246G5320 Erigeron canadensis HOM05D003384 ORTHO05D005024 5.6e-43 178.3 93 81.7
Lj2g0004466 Lotus japonicus HOM05D003384 ORTHO05D005024 5.6e-43 178.3 93 81.7
CAN.G606.41 Capsicum annuum HOM05D003384 ORTHO05D005024 7.3e-43 177.9 93 81.7
Glyma.11G221100 Glycine max HOM05D003384 ORTHO05D005024 7.3e-43 177.9 93 81.7
AUR62034627 Chenopodium quinoa HOM05D003384 ORTHO05D005024 9.5e-43 177.6 93 82.8
Phvul.001G234500 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 9.5e-43 177.6 93 79.6
Hund07041 Selenicereus undatus HOM05D003384 ORTHO05D005024 9.5e-43 177.6 93 82.8
TPR.G18022 Trifolium pratense HOM05D003384 ORTHO05D005024 1.2e-42 177.2 93 80.6
HPP92_005602 Vanilla planifolia HOM05D003384 ORTHO05D005024 1.2e-42 177.2 96 77.1
VMungo1383G2986 Vigna mungo HOM05D003384 ORTHO05D005024 1.2e-42 177.2 93 79.6
Medtr6g011360 Medicago truncatula HOM05D003384 ORTHO05D005024 1.6e-42 176.8 93 80.6
Medtr8g100045 Medicago truncatula HOM05D003384 ORTHO05D005024 1.6e-42 176.8 93 80.6
Zm00001eb067720 Zea mays HOM05D003384 ORTHO05D005024 1.6e-42 176.8 96 76.0
AUR62002272 Chenopodium quinoa HOM05D003384 ORTHO05D005024 2.1e-42 176.4 93 81.7
Lj6g0002532 Lotus japonicus HOM05D003384 ORTHO05D005024 2.8e-42 176.0 93 81.7
Phvul.009G004700 Phaseolus vulgaris HOM05D003384 ORTHO05D005024 3.6e-42 175.6 93 80.6
SGA_v2.0_scaffold2G01034 Striga asiatica HOM05D003384 ORTHO05D005024 4.7e-42 175.3 93 81.7
Solyc01g107270.4 Solanum lycopersicum HOM05D003384 ORTHO05D005024 6.2e-42 174.9 93 79.6
CDE05G0219 Ceratophyllum demersum HOM05D003384 ORTHO05D005024 8.0e-42 174.5 91 79.1
AUR62009268 Chenopodium quinoa HOM05D003384 ORTHO05D005024 8.0e-42 174.5 93 82.8
Lsat_1_v5_gn_6_96581 Lactuca sativa HOM05D003384 ORTHO05D005024 8.0e-42 174.5 96 76.0
SalBow2G3548 Salvia bowleyana HOM05D003384 ORTHO05D005024 8.0e-42 174.5 93 84.9
Sc09g0006010 Simmondsia chinensis HOM05D003384 ORTHO05D005024 7.5e-40 167.9 93 79.6
SEGI_27631 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 1.7e-39 166.8 93 73.1
SEGI_36858 Sequoiadendron giganteum HOM05D003384 ORTHO05D005024 1.7e-39 166.8 93 73.1
SMO358G0063 Selaginella moellendorffii HOM05D003384 ORTHO05D005024 8.3e-39 164.5 93 74.2
Mapoly0047s0031 Marchantia polymorpha HOM05D003384 ORTHO05D005024 1.1e-38 164.1 96 67.7
SHI22710 Sapria himalayana HOM05D003384 ORTHO05D005024 1.4e-38 163.7 91 78.0
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 4.1e-38 162.2 91 74.7
Pp3c6_8600 Physcomitrium patens HOM05D003384 ORTHO05D005024 1.0e-36 157.5 96 65.6
PRCOL_00000695 Prasinoderma coloniale HOM05D003384 ORTHO05D005024 2.8e-34 149.4 91 68.1
Cre08.g364800 Chlamydomonas reinhardtii HOM05D003384 ORTHO05D005024 9.8e-32 141.0 98 61.2
Medtr3g085010 Medicago truncatula HOM05D003384 ORTHO05D005024 1.3e-28 130.6 75 74.7
BcaC08g45597 Brassica carinata HOM05D003384 ORTHO05D005024 1.1e-25 120.9 78 71.8
MCO14G233 Micromonas commoda HOM05D003384 ORTHO05D005024 1.1e-25 120.9 91 54.9
Sopen01g049520 Solanum pennellii HOM05D003384 ORTHO05D005024 5.4e-22 108.6 63 74.6
Haze_26202 Corylus avellana HOM05D003384 ORTHO05D005024 7.1e-22 108.2 91 56.0
CAN.G426.19 Capsicum annuum HOM05D000212 ORTHO05D005509 8.6e-20 101.3 82 57.3
Cfa023973 Carpinus fangiana HOM05D003384 ORTHO05D005024 4.3e-19 99.0 83 56.6
Cc07_g16480 Coffea canephora HOM05D003384 ORTHO05D005024 7.3e-19 98.2 53 79.2
Dinv10579 Davidia involucrata HOM05D003384 ORTHO05D005024 8.1e-18 94.7 51 78.4
Aa31LG7G13860 Aethionema arabicum HOM05D003384 ORTHO05D005024 1.2e-16 90.9 47 85.1
Oeu031352.2 Olea europaea HOM05D003384 ORTHO05D005024 2.6e-16 89.7 43 90.7
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.7e-12 77.0 48 66.7
BcaB05g24847 Brassica carinata HOM05D003384 ORTHO05D005024 6.6e-12 75.1 41 82.9
SalBow1G4952 Salvia bowleyana HOM05D003384 ORTHO05D005024 1.5e-11 73.9 31 96.8
MD10G1018700 Malus domestica HOM05D003384 ORTHO05D005024 2.5e-11 73.2 99 39.4


User provided reference genes

Program Settings