Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 8.4e-224 780.0 390 100.0
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 7.7e-177 624.0 347 89.9
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.9e-175 619.4 350 87.7
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.2e-174 616.7 348 87.9
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.0e-172 609.4 347 86.5
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 3.4e-172 608.6 348 87.6
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.4e-172 608.6 354 86.2
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 9.7e-172 607.1 347 86.5
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.3e-171 606.7 346 87.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 1.4e-170 603.2 348 85.9
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.4e-170 602.4 347 86.7
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.1e-170 602.1 349 84.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 5.3e-170 601.3 346 86.7
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.0e-170 600.9 352 84.9
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 9.1e-170 600.5 350 84.3
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 9.1e-170 600.5 349 86.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.6e-169 599.7 346 86.7
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.6e-169 599.7 347 85.6
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 7.7e-169 597.4 347 85.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 7.7e-169 597.4 347 85.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 2.9e-168 595.5 347 85.3
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 5.0e-168 594.7 346 84.4
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.0e-168 594.7 349 84.8
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.5e-168 594.3 347 84.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.5e-168 594.0 347 85.0
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-167 593.6 347 84.4
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 9.4e-167 590.5 337 86.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.7e-166 589.0 347 84.7
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.6e-166 588.6 354 81.4
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 5.2e-165 584.7 334 87.1
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 4.9e-163 578.2 344 84.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.4e-162 576.6 366 79.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.0e-162 574.3 328 86.9
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 7.7e-161 570.9 351 79.2
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.7e-160 569.7 361 79.5
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.9e-160 568.9 348 81.0
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.9e-160 568.9 378 75.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.8e-160 568.5 353 78.8
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.1e-159 567.0 352 81.0
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.1e-159 567.0 351 78.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.5e-159 566.6 355 78.6
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 5.5e-159 564.7 357 77.6
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.2e-158 563.5 355 78.3
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 2.1e-158 562.8 356 78.4
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.1e-158 561.2 327 85.0
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 5.2e-157 558.1 347 79.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 6.8e-157 557.8 358 77.1
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-156 557.0 351 79.5
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.5e-156 556.6 350 79.1
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.4e-156 555.4 349 79.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.7e-156 554.7 359 78.6
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 9.8e-156 553.9 351 79.2
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.2e-155 552.7 358 78.2
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.2e-155 552.7 347 80.1
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.8e-155 552.4 350 77.7
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 4.9e-155 551.6 348 79.3
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.4e-154 550.1 355 78.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.4e-154 550.1 347 79.5
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.8e-154 549.7 354 78.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.0e-154 547.7 329 81.8
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 9.2e-154 547.4 365 75.6
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.6e-153 546.6 347 78.1
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.7e-153 545.8 336 80.4
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.6e-153 545.0 349 78.5
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.3e-152 543.5 349 77.1
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.7e-152 543.1 363 76.6
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.9e-152 542.3 351 78.9
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 8.6e-152 540.8 352 78.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.9e-151 539.7 356 77.5
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.9e-151 539.7 325 81.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.3e-151 537.7 347 77.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.5e-151 537.3 347 76.7
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-150 537.0 333 79.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.2e-150 537.0 378 72.2
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 6.1e-150 534.6 348 75.9
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.4e-149 533.5 306 86.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.8e-149 533.1 351 77.2
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.3e-149 532.7 331 79.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 4.0e-149 531.9 332 78.9
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 4.0e-149 531.9 375 72.3
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.6e-148 529.3 402 69.2
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 5.8e-148 528.1 332 77.7
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.7e-147 526.6 332 76.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 2.2e-147 526.2 326 81.0
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 2.4e-146 522.7 338 76.0
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 7.0e-146 521.2 332 77.1
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 3.5e-145 518.8 330 76.4
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.0e-144 515.0 342 76.6
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.6e-144 514.2 330 77.6
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 3.3e-143 512.3 346 75.1
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.3e-143 512.3 361 70.1
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-142 510.4 371 72.0
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-142 510.0 329 77.5
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.6e-142 510.0 338 75.4
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.1e-141 505.8 326 73.6
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 6.8e-141 504.6 325 74.8
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 3.4e-140 502.3 346 69.9
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 4.4e-140 501.9 325 74.5
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 5.8e-140 501.5 319 75.5
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 7.5e-140 501.1 326 74.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 7.5e-140 501.1 330 72.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 7.5e-140 501.1 346 69.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 7.5e-140 501.1 353 73.9
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 9.8e-140 500.7 331 73.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.3e-139 500.4 353 72.2
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.7e-139 500.0 319 75.5
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.7e-139 500.0 332 75.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.9e-138 496.5 331 72.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.9e-138 496.5 325 73.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 3.2e-138 495.7 331 71.9
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.2e-138 495.7 341 75.4
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 4.1e-138 495.4 372 68.3
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 4.6e-137 491.9 329 75.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 4.6e-137 491.9 347 72.3
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.3e-136 489.6 357 68.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.0e-136 489.2 309 78.3
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 6.6e-136 488.0 317 76.0
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 8.6e-136 487.6 330 73.3
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.1e-133 480.7 311 76.8
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-132 477.2 335 70.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-132 477.2 265 89.8
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.5e-132 476.9 324 71.3
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.7e-131 473.4 341 71.0
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.4e-130 470.3 330 70.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.1e-130 468.8 337 69.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 3.5e-129 465.7 529 50.5
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.3e-128 463.0 274 85.0
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.5e-127 459.5 347 69.5
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.4e-122 443.7 285 80.0
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.3e-120 436.4 267 81.3
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.3e-112 409.8 328 64.6
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.9e-104 382.5 353 56.7
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.5e-103 380.6 232 80.2
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-99 367.5 283 68.9
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-99 367.1 242 74.0
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 4.2e-98 362.5 332 55.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.5e-95 354.0 206 85.0
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-94 350.9 229 76.4
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.2e-91 340.1 347 56.5
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.9e-91 339.7 290 58.6
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.2e-89 334.3 206 81.6
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.0e-88 331.3 233 73.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.2e-84 317.8 188 83.5
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.6e-76 290.0 163 86.5
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 4.8e-70 269.2 376 41.5
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 7.7e-68 261.9 185 69.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.6e-65 254.2 213 64.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 8.8e-64 248.4 172 73.3
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 8.8e-64 248.4 166 74.1
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.0e-63 247.3 186 70.4
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 4.7e-57 226.1 143 76.9
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 5.7e-55 219.2 269 47.2
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 5.9e-52 209.1 340 41.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.8e-48 197.6 193 56.0
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 9.5e-42 175.3 112 81.2
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.5e-34 148.7 153 51.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.0e-27 128.6 258 36.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.3e-27 127.5 251 33.5
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 1.5e-26 124.8 71 85.9
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 5.6e-26 122.9 377 31.3
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 4.4e-23 113.2 64 82.8
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 9.8e-23 112.1 63 82.5
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.3e-22 111.7 206 37.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 7.8e-20 102.4 91 59.3
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.0e-19 100.5 57 82.5
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.5e-18 98.2 60 81.7
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 6.8e-16 89.4 133 42.1
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.1e-12 77.8 62 61.3
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 1.1e-08 65.5 57 61.4
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 3.4e-07 60.5 35 77.1
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 5.8e-07 59.7 72 44.4


User provided reference genes

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