Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 0.0e+00 1190.3 701 100.0
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.0e-191 673.3 599 67.8
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 1.3e-105 388.3 503 48.5
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.2e-104 383.6 608 52.6
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.5e-101 374.0 432 53.7
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 4.0e-99 366.7 489 48.1
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.5e-98 364.8 455 50.5
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 4.4e-98 363.2 504 45.8
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.9e-97 360.5 471 51.8
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 2.9e-97 360.5 471 51.8
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.9e-97 360.5 491 46.2
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 4.9e-97 359.8 493 46.9
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 6.4e-97 359.4 472 47.9
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 1.4e-96 358.2 488 47.1
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 9.2e-96 355.5 496 47.8
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 1.2e-95 355.1 497 46.3
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 3.0e-94 350.5 506 45.5
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 6.6e-94 349.4 482 49.0
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.1e-93 348.6 501 46.9
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 7.3e-93 345.9 504 45.2
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 3.6e-92 343.6 502 45.4
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 4.7e-92 343.2 554 44.8
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 3.1e-91 340.5 497 44.7
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 5.2e-91 339.7 426 48.8
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 2.0e-90 337.8 501 44.7
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 2.9e-89 334.0 505 44.0
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.1e-88 332.0 499 44.1
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 2.4e-88 330.9 539 43.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 1.2e-87 328.6 498 44.0
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.5e-85 321.6 505 45.1
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 3.3e-85 320.5 428 47.4
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.7e-81 308.1 488 43.9
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 4.9e-81 306.6 517 42.6
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 4.1e-80 303.5 464 43.5
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.2e-79 302.0 636 40.7
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 5.1e-78 296.6 801 37.8
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 5.1e-78 296.6 553 39.6
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 6.6e-78 296.2 454 43.2
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 1.9e-77 294.7 481 41.8
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 2.5e-77 294.3 549 41.0
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.3e-77 293.9 491 41.5
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.3e-77 292.7 493 41.8
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 2.8e-76 290.8 478 42.7
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 4.7e-76 290.0 425 52.9
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 1.8e-75 288.1 495 41.8
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 6.8e-75 286.2 492 42.3
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 8.9e-75 285.8 363 49.3
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 9.9e-74 282.3 455 42.4
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.3e-73 282.0 529 38.9
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 1.3e-73 282.0 463 42.8
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 1.1e-72 278.9 473 42.9
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 3.2e-72 277.3 495 40.2
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 9.3e-72 275.8 437 43.2
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 9.3e-72 275.8 428 43.9
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.5e-71 273.9 465 41.7
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 4.6e-71 273.5 472 41.1
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 6.0e-71 273.1 420 44.5
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 7.8e-71 272.7 497 39.6
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 7.8e-71 272.7 429 43.6
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 1.7e-70 271.6 465 40.6
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 3.0e-70 270.8 371 46.1
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 3.0e-70 270.8 256 60.5
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.9e-70 270.4 465 41.5
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.1e-69 268.9 430 44.9
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.5e-69 268.5 444 41.9
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 2.5e-69 267.7 450 43.1
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 2.5e-69 267.7 420 44.0
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.1e-68 264.6 463 41.5
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 2.1e-68 264.6 472 40.7
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 4.8e-68 263.5 437 44.2
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 8.1e-68 262.7 436 43.3
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 8.1e-68 262.7 417 43.6
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 5.3e-67 260.0 502 39.0
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 6.9e-67 259.6 421 43.2
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 6.9e-67 259.6 240 58.8
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 7.6e-66 256.1 485 45.4
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 7.6e-66 256.1 434 41.5
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.3e-65 255.4 496 39.9
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.7e-65 255.0 437 43.2
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.7e-65 255.0 536 37.5
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.2e-65 254.6 540 42.4
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 3.8e-65 253.8 266 53.0
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.9e-64 251.5 518 40.5
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 2.1e-63 248.1 547 37.1
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 3.5e-63 247.3 521 39.0
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.5e-63 247.3 460 40.2
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 1.3e-62 245.4 436 41.1
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 1.7e-62 245.0 437 40.7
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.7e-62 245.0 281 53.7
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.7e-62 245.0 202 62.9
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 5.1e-62 243.4 533 38.3
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 6.6e-62 243.0 305 48.9
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 6.6e-62 243.0 438 39.5
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.1e-61 242.3 434 41.2
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.1e-61 242.3 439 39.2
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 1.5e-61 241.9 450 40.0
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 1.5e-61 241.9 437 41.4
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 4.3e-61 240.4 286 48.6
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 7.3e-61 239.6 290 47.9
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 9.6e-61 239.2 378 42.9
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 1.3e-60 238.8 414 39.6
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 3.6e-60 237.3 478 43.1
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 4.8e-60 236.9 271 53.5
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 6.2e-60 236.5 332 44.0
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 8.1e-60 236.1 296 52.7
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.1e-59 235.7 333 44.1
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.1e-59 235.7 333 44.1
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.4e-59 234.6 175 68.0
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 5.3e-59 233.4 429 39.9
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.5e-58 231.9 424 41.0
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 4.5e-58 230.3 223 59.6
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 9.9e-58 229.2 173 64.2
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 2.2e-57 228.0 353 43.1
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 2.9e-57 227.6 472 37.3
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.4e-56 224.6 490 39.2
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 1.2e-55 222.2 409 38.1
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 1.2e-55 222.2 421 38.2
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.3e-54 218.8 273 46.9
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.1e-53 215.7 394 37.1
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 5.6e-53 213.4 394 36.5
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 5.6e-53 213.4 279 48.4
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 4.8e-52 210.3 500 36.4
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.8e-51 208.4 190 54.2
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 1.0e-49 202.6 214 48.6
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.0e-49 202.6 479 38.4
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 3.8e-49 200.7 206 53.4
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 1.6e-47 195.3 193 52.8
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 1.0e-46 192.6 416 37.3
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.8e-46 191.8 241 47.3
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 6.7e-46 189.9 167 58.1
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.1e-44 184.9 187 51.3
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 4.8e-44 183.7 184 53.8
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 5.5e-40 170.2 132 61.4
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.0e-38 166.0 137 57.7
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 3.9e-38 164.1 135 56.3
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 3.1e-35 154.5 214 43.0
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.5e-34 152.1 197 44.7
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 5.0e-33 147.1 200 44.0
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 5.0e-33 147.1 136 53.7
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.5e-32 144.8 139 53.2
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.6e-23 115.5 126 49.2
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 1.6e-23 115.5 333 35.1
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 4.7e-23 114.0 126 49.2
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 3.0e-22 111.3 100 62.0
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 3.8e-17 94.4 71 63.4
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 5.5e-16 90.5 88 54.5
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 9.7e-13 79.7 192 30.2
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 4.5e-10 70.9 119 31.9
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.1e-08 66.2 100 39.0


User provided reference genes

Program Settings