Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.3e-208 729.6 387 100.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.7e-166 588.2 436 72.7
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 8.8e-141 504.2 425 64.7
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 5.7e-140 501.5 405 72.6
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 9.1e-138 494.2 424 67.7
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.2e-137 493.8 441 63.7
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.2e-134 483.8 452 61.9
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.6e-134 482.3 439 67.0
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 8.0e-134 481.1 465 62.4
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 3.0e-133 479.2 420 66.4
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.6e-132 476.1 415 66.0
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 9.8e-132 474.2 445 62.0
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.7e-131 473.4 394 68.8
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 4.9e-131 471.9 447 60.9
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.8e-130 469.9 433 61.7
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.0e-130 468.0 413 67.3
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.7e-129 466.1 406 65.8
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 5.9e-129 464.9 441 63.9
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 2.5e-127 459.5 455 57.1
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 7.3e-127 458.0 438 60.0
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.8e-126 456.1 447 61.3
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 4.7e-126 455.3 416 64.2
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.0e-125 454.1 459 62.7
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.4e-125 453.8 454 57.9
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.3e-125 453.0 445 59.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.6e-124 449.5 429 60.4
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.4e-124 448.7 410 65.4
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 7.5e-124 448.0 455 57.8
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 7.5e-124 448.0 441 58.7
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.1e-122 444.1 432 60.4
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.4e-122 443.7 432 60.6
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.9e-122 443.4 435 59.1
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.9e-122 443.4 475 59.8
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.4e-122 443.0 437 59.5
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 5.4e-122 441.8 424 59.7
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 7.0e-122 441.4 442 58.6
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.2e-121 440.7 432 60.2
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 1.6e-121 440.3 427 60.0
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.0e-120 437.6 477 54.9
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.3e-120 437.2 438 58.9
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 3.0e-120 436.0 421 64.6
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.9e-120 435.6 482 54.6
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.0e-120 435.3 477 54.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 6.6e-120 434.9 447 61.5
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 6.6e-120 434.9 422 64.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 9.5e-119 431.0 418 62.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.5e-119 431.0 478 55.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 2.8e-118 429.5 450 58.2
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.4e-117 427.2 445 57.8
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.4e-117 427.2 478 55.2
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.4e-117 427.2 491 52.7
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 2.3e-117 426.4 436 58.5
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 2.3e-117 426.4 429 60.6
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.2e-116 424.1 473 54.8
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.6e-116 422.9 435 57.5
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 5.8e-116 421.8 453 57.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.8e-116 421.8 478 54.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.7e-115 420.2 478 55.0
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 3.7e-115 419.1 430 58.1
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.2e-113 414.1 469 54.4
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 6.0e-113 411.8 443 58.5
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 7.8e-113 411.4 487 55.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 7.8e-113 411.4 424 61.6
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.3e-112 410.6 431 56.8
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 3.9e-112 409.1 403 59.6
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 8.6e-112 407.9 426 61.0
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 4.3e-111 405.6 421 60.8
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 9.5e-111 404.4 500 50.6
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.2e-110 404.1 391 61.6
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.8e-110 402.9 503 50.7
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.7e-110 402.1 422 60.7
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.8e-109 398.3 424 60.8
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.6e-108 396.4 430 56.7
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.9e-107 392.9 460 55.0
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 4.9e-107 392.1 464 55.6
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 6.4e-107 391.7 444 53.8
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 6.4e-107 391.7 512 48.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 1.4e-106 390.6 427 56.9
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 5.4e-106 388.7 425 56.5
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 5.4e-106 388.7 426 56.1
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 9.2e-106 387.9 393 57.8
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 2.1e-105 386.7 422 57.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.9e-103 380.2 439 54.7
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 5.6e-103 378.6 407 59.2
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 4.7e-102 375.6 445 54.8
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 4.0e-101 372.5 428 56.3
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 8.9e-101 371.3 426 52.1
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.5e-100 370.5 445 53.9
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.5e-100 370.5 400 55.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 2.0e-100 370.2 426 54.5
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 3.4e-100 369.4 418 53.8
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 3.4e-100 369.4 429 55.2
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.8e-100 368.6 407 57.2
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.7e-99 367.1 486 48.8
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 2.2e-99 366.7 426 53.3
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 8.4e-99 364.8 452 52.9
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 8.4e-99 364.8 390 59.7
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 2.4e-98 363.2 419 55.4
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 4.6e-97 359.0 422 54.7
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 6.0e-97 358.6 489 50.9
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.1e-95 354.4 427 54.1
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.1e-94 350.1 426 53.5
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.4e-93 346.7 431 56.4
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 5.3e-93 345.5 507 50.1
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 8.4e-91 338.2 491 46.6
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.2e-86 322.0 359 55.4
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 9.9e-84 314.7 198 80.3
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 1.4e-82 310.8 379 51.7
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.0e-80 304.7 438 45.7
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.0e-80 303.1 194 82.0
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.6e-78 297.4 466 44.6
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 3.1e-77 293.1 425 44.7
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 4.9e-75 285.8 373 49.9
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 4.9e-75 285.8 284 58.8
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 4.9e-75 285.8 464 43.1
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 8.4e-75 285.0 173 83.8
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.4e-74 284.3 315 55.2
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 1.9e-74 283.9 516 40.5
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 5.6e-71 272.3 304 59.9
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.7e-67 260.8 358 50.6
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 6.0e-65 252.3 337 49.0
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 5.7e-55 219.2 128 84.4
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 5.3e-53 212.6 483 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 9.1e-53 211.8 381 41.7
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.6e-49 201.1 268 47.4
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.0e-48 198.4 169 66.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.8e-46 190.3 363 41.9
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.7e-41 173.7 405 36.0
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 7.0e-37 159.1 175 49.7
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 6.1e-33 146.0 177 46.9
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.8e-30 137.1 289 35.6
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 7.0e-29 132.5 147 46.3
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.8e-24 117.9 107 63.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 8.8e-24 115.5 65 89.2
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 4.1e-21 106.7 162 42.6
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.7e-20 102.4 94 59.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 7.7e-20 102.4 97 59.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 2.3e-19 100.9 361 32.1
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 2.3e-19 100.9 361 32.1
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 3.4e-15 87.0 189 34.4
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 2.4e-13 80.9 102 46.1
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 2.4e-13 80.9 102 46.1
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.2e-12 78.6 52 69.2
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 2.0e-12 77.8 147 48.3
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.7e-12 77.4 101 47.5
Cfa022458 Carpinus fangiana HOM05D005375 ORTHO05D121393 5.2e-08 63.2 313 25.6


User provided reference genes

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