Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.2e-291 1005.7 496 100.0
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 5.1e-258 894.0 494 87.9
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.4e-255 885.9 496 86.1
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.4e-252 875.9 493 86.4
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 7.1e-252 873.6 496 84.5
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 7.1e-252 873.6 496 84.7
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 7.1e-252 873.6 496 85.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.6e-251 872.5 496 85.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 6.0e-251 870.5 488 85.5
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 6.0e-251 870.5 494 86.0
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.3e-250 868.6 496 84.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 6.6e-250 867.1 496 84.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 6.6e-250 867.1 496 84.1
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 8.7e-250 866.7 496 84.1
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-249 866.3 496 84.7
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.3e-249 864.8 496 84.5
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 7.4e-249 863.6 496 84.7
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 7.4e-249 863.6 496 85.1
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 6.2e-248 860.5 493 84.2
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 8.1e-248 860.1 496 83.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.4e-247 858.6 496 83.7
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 5.3e-247 857.4 496 84.5
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.9e-247 857.1 496 84.1
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 9.0e-247 856.7 496 83.9
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.4e-246 854.7 496 83.5
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.4e-246 854.7 489 85.1
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 9.9e-246 853.2 489 84.7
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.2e-245 852.0 496 83.9
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.2e-245 852.0 496 83.7
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.9e-245 851.7 496 83.9
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 8.4e-245 850.1 493 84.2
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.4e-244 849.4 494 84.4
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 3.2e-244 848.2 492 83.9
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.2e-244 847.8 494 83.6
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 7.1e-244 847.0 496 83.9
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 9.3e-244 846.7 498 83.5
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.6e-243 845.9 494 82.6
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 2.1e-243 845.5 494 83.6
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 2.1e-243 845.5 496 82.9
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.1e-243 845.5 493 83.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.9e-243 843.6 496 82.7
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 7.9e-243 843.6 492 83.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-242 842.8 495 84.0
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 2.3e-242 842.0 496 82.7
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 2.3e-242 842.0 498 83.3
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 3.0e-242 841.6 507 81.7
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 3.9e-242 841.3 494 82.6
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 5.1e-242 840.9 494 82.8
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 1.5e-241 839.3 493 82.6
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.9e-241 839.0 494 83.4
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.5e-241 838.6 496 82.3
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.5e-241 838.6 495 82.6
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.5e-241 838.6 526 79.1
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.6e-241 837.4 496 81.9
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 9.6e-241 836.6 496 82.9
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.8e-240 835.1 496 81.5
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.7e-240 834.7 527 78.9
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 4.8e-240 834.3 493 82.6
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.8e-239 832.4 496 82.3
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 4.0e-239 831.2 496 81.9
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.0e-239 831.2 511 80.4
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 5.3e-239 830.9 493 83.0
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 6.9e-239 830.5 482 84.0
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 6.9e-239 830.5 493 82.4
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.0e-238 828.9 495 82.2
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 3.4e-238 828.2 493 81.9
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 5.8e-238 827.4 494 81.4
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.0e-237 826.6 480 83.1
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.2e-237 825.5 493 81.3
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 2.9e-237 825.1 493 82.6
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 4.9e-237 824.3 494 80.8
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 4.9e-237 824.3 493 82.8
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 8.4e-237 823.5 493 81.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 5.5e-236 820.8 493 80.1
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 6.0e-235 817.4 490 81.0
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.0e-234 816.6 493 80.3
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.3e-234 815.5 493 80.5
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 3.9e-234 814.7 494 80.6
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 6.7e-234 813.9 493 80.3
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 6.7e-234 813.9 492 80.7
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.1e-233 813.1 495 80.6
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.9e-233 812.4 492 79.9
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 3.3e-233 811.6 493 80.5
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 9.6e-233 810.1 496 79.8
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.6e-232 809.3 490 80.2
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.1e-232 808.9 491 79.6
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 2.1e-232 808.9 498 79.1
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 2.8e-232 808.5 490 80.4
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 3.7e-232 808.1 502 78.5
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.7e-232 808.1 486 81.3
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.7e-232 808.1 493 78.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.7e-232 808.1 495 80.2
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 4.8e-232 807.7 490 80.4
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 8.2e-232 807.0 490 80.4
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 3.1e-231 805.1 491 79.4
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.2e-230 803.1 490 78.8
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.6e-230 802.0 492 79.5
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.6e-230 802.0 490 79.6
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.6e-230 802.0 498 78.9
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.9e-228 795.8 491 79.4
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 1.9e-225 785.8 436 87.4
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.6e-224 782.7 488 78.9
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.1e-223 780.0 485 79.2
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.6e-219 766.1 492 76.0
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 3.3e-217 758.4 515 74.4
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.7e-216 756.1 444 83.3
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 6.3e-216 754.2 437 81.9
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.9e-212 742.7 442 81.4
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.3e-210 735.7 444 82.9
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 8.2e-208 727.2 442 80.1
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 7.7e-206 720.7 492 71.7
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 2.5e-204 715.7 443 79.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.3e-197 693.3 389 87.1
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.7e-197 693.0 485 70.5
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.5e-196 689.1 491 72.7
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.5e-196 689.1 489 68.5
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 4.7e-195 684.9 494 71.7
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 4.1e-191 671.8 385 84.7
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.7e-190 667.5 471 73.7
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 5.4e-183 644.8 405 76.5
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.3e-178 629.4 388 79.6
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.7e-176 623.2 509 61.9
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 4.1e-175 618.6 498 65.7
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 7.3e-172 607.8 391 77.7
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 2.2e-168 596.3 348 83.6
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.2e-166 590.5 461 68.8
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.1e-164 583.9 382 76.4
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 4.6e-150 535.4 528 52.7
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.2e-135 486.1 266 88.7
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 5.3e-122 442.2 473 51.0
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 4.6e-118 429.1 245 84.5
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.6e-113 413.3 481 50.9
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 3.8e-112 409.5 238 83.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-110 404.1 228 86.0
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.4e-106 391.0 301 66.8
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 3.4e-105 386.3 252 74.2
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.8e-104 382.9 238 76.9
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.6e-102 377.5 431 50.8
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-96 357.8 303 66.0
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.9e-95 354.0 238 73.5
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.3e-92 343.2 313 59.4
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.1e-90 338.2 236 70.3
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 3.0e-77 293.5 254 63.4
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.4e-61 241.5 260 53.8
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.7e-59 234.6 158 73.4
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 4.3e-55 219.9 150 69.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 3.7e-51 206.8 299 44.5
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 6.2e-46 189.5 103 86.4
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 3.1e-45 187.2 104 87.5
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.9e-45 185.7 151 67.5
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 1.2e-44 185.3 98 86.7
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.0e-44 184.5 142 64.1
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 9.2e-42 175.6 116 75.0
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 9.9e-36 155.6 159 52.8
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.1e-34 152.1 142 57.0
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.4e-29 135.2 75 85.3
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 6.9e-29 132.9 79 79.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 2.2e-27 127.9 85 74.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 9.9e-20 102.4 93 60.2
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 6.0e-17 93.2 76 64.5
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.4e-13 81.3 61 68.9
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 1.1e-10 72.4 36 88.9
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 7.1e-10 69.7 46 71.7
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.1e-09 68.2 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.5e-07 62.0 30 86.7


User provided reference genes

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