Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 4.2e-150 534.6 267 100.0
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 6.7e-148 527.3 267 99.3
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 8.8e-148 526.9 267 98.9
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 1.7e-87 326.6 246 67.9
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 6.8e-84 314.7 246 65.4
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 9.3e-81 304.3 229 66.8
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 5.1e-79 298.5 238 61.3
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 1.1e-78 297.4 217 66.4
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 3.3e-78 295.8 216 67.1
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 7.3e-78 294.7 236 64.0
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 2.8e-77 292.7 241 63.5
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 4.8e-77 292.0 220 66.4
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 1.1e-76 290.8 213 68.1
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 1.4e-76 290.4 226 63.7
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 2.4e-76 289.7 222 65.3
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 5.8e-75 285.0 257 58.0
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 9.9e-75 284.3 230 63.5
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 3.8e-74 282.3 210 62.9
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 4.9e-74 282.0 213 66.2
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.9e-73 280.0 214 66.4
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 4.2e-73 278.9 210 67.1
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 4.2e-73 278.9 223 60.1
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 5.4e-73 278.5 263 56.3
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 7.1e-73 278.1 243 61.7
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 9.3e-73 277.7 248 59.3
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 1.2e-72 277.3 239 57.3
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 1.6e-72 276.9 232 61.2
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 3.5e-72 275.8 253 55.7
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 7.9e-72 274.6 217 63.1
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.0e-71 274.2 212 63.7
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 1.0e-71 274.2 259 56.4
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 1.0e-71 274.2 218 63.3
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 1.3e-71 273.9 206 66.5
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 1.7e-71 273.5 210 61.4
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 1.7e-71 273.5 210 61.4
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 2.3e-71 273.1 250 56.4
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 6.6e-71 271.6 211 63.0
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 1.1e-70 270.8 259 56.4
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 1.5e-70 270.4 225 62.7
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 1.9e-70 270.0 212 60.4
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 4.3e-70 268.9 244 55.3
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 5.6e-70 268.5 219 62.1
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 5.6e-70 268.5 239 57.3
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 7.3e-70 268.1 253 55.7
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 1.8e-68 263.5 214 63.1
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 4.0e-68 262.3 216 59.7
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 5.3e-68 261.9 210 61.9
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 1.5e-67 260.4 210 64.8
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 2.0e-67 260.0 240 60.0
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 2.6e-67 259.6 214 60.3
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 3.4e-67 259.2 252 52.8
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 3.4e-67 259.2 218 60.1
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 4.5e-67 258.8 212 59.0
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.6e-67 258.1 235 58.7
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 9.9e-67 257.7 250 56.0
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 2.9e-66 256.1 219 60.7
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 4.9e-66 255.4 225 58.7
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 6.4e-66 255.0 223 53.4
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 8.4e-66 254.6 214 61.2
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 1.4e-65 253.8 212 59.0
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.9e-65 253.4 225 58.2
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 3.2e-65 252.7 227 55.5
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.1e-65 251.5 209 60.8
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.1e-65 251.5 233 58.4
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 7.1e-65 251.5 232 57.3
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.3e-63 247.3 222 58.1
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 2.3e-63 246.5 225 53.3
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 1.5e-62 243.8 225 52.0
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 1.9e-62 243.4 225 53.8
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 2.5e-62 243.0 225 52.0
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 2.5e-62 243.0 225 52.0
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 7.4e-62 241.5 236 53.8
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 2.1e-61 240.0 219 54.3
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 3.7e-61 239.2 225 53.3
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 4.8e-61 238.8 225 52.4
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 4.8e-61 238.8 224 51.8
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 6.2e-61 238.4 222 55.4
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 1.1e-60 237.7 354 42.4
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 1.4e-60 237.3 226 51.8
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 3.1e-60 236.1 225 52.4
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 2.0e-59 233.4 219 53.9
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 3.8e-58 229.2 225 50.7
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 2.1e-56 223.4 215 51.6
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 2.3e-55 219.9 211 52.6
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 1.5e-54 217.2 238 49.2
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 9.6e-54 214.5 209 49.8
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 4.1e-52 209.1 441 34.2
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 2.6e-51 206.5 206 47.6
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 1.3e-50 204.1 183 53.6
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 3.8e-50 202.6 204 51.0
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 5.5e-49 198.7 173 58.4
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 7.2e-49 198.4 219 45.2
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 7.4e-46 188.3 212 43.9
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 5.3e-44 182.2 160 61.9
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 7.7e-43 178.3 181 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 1.4e-41 174.1 157 51.6
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 1.6e-40 170.6 205 46.3
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.5e-38 164.1 147 61.2
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 1.1e-36 157.9 138 58.7
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 1.5e-35 154.1 157 49.7
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 7.2e-33 145.2 125 57.6
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 7.4e-30 135.2 117 54.7
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 5.3e-28 129.0 97 61.9
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 8.0e-24 115.2 206 32.0
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 2.0e-11 73.9 54 55.6
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 1.0e-10 71.6 87 42.5
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 2.2e-10 70.5 51 62.7
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 4.2e-09 66.2 118 32.2
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 4.2e-09 66.2 118 32.2
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 4.2e-09 66.2 118 32.2
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 4.2e-09 66.2 118 32.2
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 9.4e-09 65.1 132 31.1
TWI56G1135 Tripterygium wilfordii HOM05D005920 ORTHO05D007211 1.6e-08 64.3 127 35.4
AUR62024011 Chenopodium quinoa HOM05D000115 ORTHO05D005317 6.1e-08 62.4 111 35.1
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 6.1e-08 62.4 134 31.3
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 8.0e-08 62.0 120 31.7
Pp3c22_12710 Physcomitrium patens HOM05D001916 ORTHO05D003272 8.0e-08 62.0 123 29.3
Sed0008444 Sechium edule HOM05D002462 ORTHO05D002893 8.0e-08 62.0 105 36.2
CBR_g6631 Chara braunii HOM05D002462 ORTHO05D002893 1.4e-07 61.2 128 28.1
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 1.4e-07 61.2 117 35.0
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 1.8e-07 60.8 137 29.9
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 1.8e-07 60.8 118 31.4
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 1.8e-07 60.8 129 29.5
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 2.3e-07 60.5 106 31.1
Manes.15G032000 Manihot esculenta HOM05D006451 ORTHO05D007680 2.3e-07 60.5 128 31.2
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 2.3e-07 60.5 117 35.0
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 2.3e-07 60.5 116 31.9
Os12g0636100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 3.0e-07 60.1 99 29.3
Sed0026394 Sechium edule HOM05D006451 ORTHO05D007680 3.0e-07 60.1 115 33.0
THA.LOC104826059 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 4.0e-07 59.7 117 31.6
Duzib151G0283 Durio zibethinus HOM05D006451 ORTHO05D007680 5.2e-07 59.3 118 32.2
FAN17G1940 Fragaria x ananassa HOM05D006451 ORTHO05D007680 5.2e-07 59.3 110 33.6
HPP92_009818 Vanilla planifolia HOM05D001916 ORTHO05D003272 5.2e-07 59.3 103 32.0
BcaB08g34470 Brassica carinata HOM05D002462 ORTHO05D002893 6.8e-07 58.9 121 32.2
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 6.8e-07 58.9 117 33.3
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 6.8e-07 58.9 116 31.0
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 8.8e-07 58.5 108 30.6
CSS0014602 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 8.8e-07 58.5 131 33.6
CSS0023735 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 8.8e-07 58.5 131 33.6
AUR62041331 Chenopodium quinoa HOM05D000115 ORTHO05D005317 8.8e-07 58.5 111 33.3
Nitab4.5_0000085g0050 Nicotiana tabacum HOM05D006451 ORTHO05D007680 8.8e-07 58.5 124 33.1
Haze_11218 Corylus avellana HOM05D006451 ORTHO05D007680 1.2e-06 58.2 116 30.2
FvH4_4g00880 Fragaria vesca HOM05D006451 ORTHO05D007680 1.2e-06 58.2 110 32.7
FAN12G3362 Fragaria x ananassa HOM05D006451 ORTHO05D007680 1.2e-06 58.2 110 32.7
FAN22G0671 Fragaria x ananassa HOM05D006451 ORTHO05D007680 1.2e-06 58.2 110 32.7
Lalb_Chr01g0020941 Lupinus albus HOM05D006451 ORTHO05D007680 1.2e-06 58.2 119 30.3
Manes.03G174100 Manihot esculenta HOM05D006451 ORTHO05D007680 1.2e-06 58.2 116 31.0
CBR_g18988 Chara braunii HOM05D006451 ORTHO05D007680 2.0e-06 57.4 119 29.4
AUR62034703 Chenopodium quinoa HOM05D006451 ORTHO05D007680 2.0e-06 57.4 122 30.3
Pp3c7_11180 Physcomitrium patens HOM05D000115 ORTHO05D005317 2.0e-06 57.4 122 31.1
PGR042G3651 Punica granatum HOM05D002462 ORTHO05D002893 2.0e-06 57.4 110 31.8
RcHm_v2.0_Chr4g0387501 Rosa chinensis HOM05D006451 ORTHO05D007680 2.0e-06 57.4 127 31.5
HPP92_001912 Vanilla planifolia HOM05D006451 ORTHO05D007680 2.0e-06 57.4 129 31.8
Glyma.10G003800 Glycine max HOM05D006451 ORTHO05D007680 2.6e-06 57.0 118 29.7
Gohir.A01G023900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 2.6e-06 57.0 118 30.5
Gohir.D01G021900 Gossypium hirsutum HOM05D006451 ORTHO05D007680 2.6e-06 57.0 118 30.5
Gorai.002G024400 Gossypium raimondii HOM05D006451 ORTHO05D007680 2.6e-06 57.0 118 30.5
Lj6g0024617 Lotus japonicus HOM05D006451 ORTHO05D007680 2.6e-06 57.0 111 32.4
QL93p0107_0053 Quercus lobata HOM05D002462 ORTHO05D007680 2.6e-06 57.0 103 34.0
Sopen04g029140 Solanum pennellii HOM05D000868 ORTHO05D000711 2.6e-06 57.0 97 26.8
Atru.chr4.2375 Acer truncatum HOM05D006451 ORTHO05D007680 3.4e-06 56.6 123 30.1
Atru.chr4.2399 Acer truncatum HOM05D006451 ORTHO05D007680 3.4e-06 56.6 123 30.1
AUR62043956 Chenopodium quinoa HOM05D006451 ORTHO05D007680 3.4e-06 56.6 111 32.4
Cc03_g04170 Coffea canephora HOM05D006451 ORTHO05D007680 3.4e-06 56.6 125 28.0
MD16G1198200 Malus domestica HOM05D006451 ORTHO05D007680 3.4e-06 56.6 123 30.9
Potri.010G082900 Populus trichocarpa HOM05D006451 ORTHO05D007680 3.4e-06 56.6 131 30.5
Solyc04g073940.4 Solanum lycopersicum HOM05D000868 ORTHO05D000711 3.4e-06 56.6 97 26.8
Thecc.04G237100 Theobroma cacao HOM05D006451 ORTHO05D007680 3.4e-06 56.6 118 30.5
CiPaw.07G068600 Carya illinoinensis HOM05D001789 ORTHO05D001755 4.4e-06 56.2 102 30.4
CDE10G0598 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 4.4e-06 56.2 100 32.0
HanXRQChr17g0541261 Helianthus annuus HOM05D000115 ORTHO05D005317 4.4e-06 56.2 110 29.1
Sabra05G0133900 Salix brachista HOM05D005920 ORTHO05D007211 4.4e-06 56.2 134 32.1
Sabra10G0060200 Salix brachista HOM05D006451 ORTHO05D007680 4.4e-06 56.2 116 31.0
PGSC0003DMG400017715 Solanum tuberosum HOM05D000868 ORTHO05D000711 4.4e-06 56.2 97 26.8
SGA_v2.0_scaffold191G40453 Striga asiatica HOM05D006451 ORTHO05D007680 4.4e-06 56.2 119 30.3
Nitab4.5_0001273g0050 Nicotiana tabacum HOM05D005920 ORTHO05D007211 5.7e-06 55.8 127 30.7
PGR031G0384 Punica granatum HOM05D002462 ORTHO05D002893 5.7e-06 55.8 105 32.4
Zm00001eb248730 Zea mays HOM05D002462 ORTHO05D002893 5.7e-06 55.8 99 33.3
Aqoxy5G00331 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 7.5e-06 55.5 113 29.2
COL.COLO4_21546 Corchorus olitorius HOM05D006451 ORTHO05D007680 7.5e-06 55.5 122 29.5
EL10Ac3g05391 Beta vulgaris HOM05D001916 ORTHO05D003272 9.8e-06 55.1 111 27.9
CAN.G1402.12 Capsicum annuum HOM05D006451 ORTHO05D007680 9.8e-06 55.1 125 29.6
CDE10G0543 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 9.8e-06 55.1 100 32.0
ECA246G2944 Erigeron canadensis HOM05D005920 ORTHO05D007211 9.8e-06 55.1 123 30.1


User provided reference genes

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