Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1670 Trochodendron aralioides HOM05D003747 ORTHO05D016772 2.4e-104 382.1 187 100.0
TAR628G0607 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.0e-73 280.4 216 70.4
TAR376G0166 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.9e-64 249.6 249 57.4
Aqoxy6G02380 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 4.8e-60 235.0 251 53.8
Dinv31811 Davidia involucrata HOM05D003747 ORTHO05D005080 3.1e-59 232.3 206 60.2
Nn5g29219 Nelumbo nucifera HOM05D003747 ORTHO05D005080 4.5e-58 228.4 216 57.4
Manes.05G152300 Manihot esculenta HOM05D003747 ORTHO05D005080 1.1e-56 223.8 242 52.1
PSO541G0570 Papaver somniferum HOM05D003747 ORTHO05D005080 1.1e-56 223.8 251 49.8
Manes.18G017800 Manihot esculenta HOM05D003747 ORTHO05D005080 5.5e-56 221.5 244 53.7
Eucgr.F01620 Eucalyptus grandis HOM05D003747 ORTHO05D005080 1.2e-55 220.3 248 52.4
Hma1.2p1_1386F.1_g279810 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 1.2e-55 220.3 249 51.8
MBI05_g04846_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.2e-55 220.3 249 52.2
PSO675G4036 Papaver somniferum HOM05D003747 ORTHO05D005080 1.2e-55 220.3 259 49.4
Oeu047748.1 Olea europaea HOM05D003747 ORTHO05D005080 2.7e-55 219.2 246 51.6
Oeu046245.1 Olea europaea HOM05D003747 ORTHO05D005080 3.6e-55 218.8 246 51.2
GSVIVG01009826001 Vitis vinifera HOM05D003747 ORTHO05D005080 4.7e-55 218.4 236 54.7
Rhsim06G0026300 Rhododendron simsii HOM05D003747 ORTHO05D005080 1.0e-54 217.2 246 50.0
COL.COLO4_26196 Corchorus olitorius HOM05D003747 ORTHO05D005080 1.4e-54 216.9 242 50.4
Atru.chr13.357 Acer truncatum HOM05D003747 ORTHO05D005080 1.8e-54 216.5 244 50.0
Hma1.2p1_0773F.1_g216160 Hydrangea macrophylla HOM05D003747 ORTHO05D005080 3.0e-54 215.7 249 51.4
Cc10_g02100 Coffea canephora HOM05D003747 ORTHO05D005080 5.2e-54 214.9 245 51.0
Glyma.10G132800 Glycine max HOM05D003747 ORTHO05D005080 5.2e-54 214.9 240 52.5
Gohir.D01G100800 Gossypium hirsutum HOM05D003747 ORTHO05D005080 5.2e-54 214.9 245 49.8
Oeu046243.1 Olea europaea HOM05D003747 ORTHO05D005080 5.2e-54 214.9 246 50.8
ClCG05G018570 Citrullus lanatus HOM05D003747 ORTHO05D005080 6.8e-54 214.5 246 49.6
QL02p010745 Quercus lobata HOM05D003747 ORTHO05D005080 8.8e-54 214.2 242 51.7
Glyma.20G084100 Glycine max HOM05D003747 ORTHO05D005080 1.2e-53 213.8 244 48.8
Gorai.002G125100 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.2e-53 213.8 245 49.8
MELO3C024651.2 Cucumis melo HOM05D003747 ORTHO05D005080 1.5e-53 213.4 246 48.8
CsaV3_1G045450 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.0e-53 213.0 246 48.8
CsaV3_UNG233290 Cucumis sativus L. HOM05D003747 ORTHO05D005080 2.0e-53 213.0 246 48.8
Ciclev10000324m.g Citrus clementina HOM05D003747 ORTHO05D005080 2.6e-53 212.6 246 51.2
CiPaw.07G154200 Carya illinoinensis HOM05D003747 ORTHO05D005080 3.4e-53 212.2 242 50.0
Duzib041G0542 Durio zibethinus HOM05D003747 ORTHO05D005080 3.4e-53 212.2 242 50.4
Gohir.A01G113100 Gossypium hirsutum HOM05D003747 ORTHO05D005080 3.4e-53 212.2 245 49.0
Lj6g0007889 Lotus japonicus HOM05D003747 ORTHO05D005080 3.4e-53 212.2 244 51.2
Lj4C29T2 Lonicera japonica HOM05D003747 ORTHO05D005080 4.4e-53 211.8 246 50.8
Lalb_Chr19g0128511 Lupinus albus HOM05D003747 ORTHO05D005080 4.4e-53 211.8 244 50.4
Prupe.1G370600 Prunus persica HOM05D003747 ORTHO05D005080 4.4e-53 211.8 244 48.8
Lalb_Chr03g0036971 Lupinus albus HOM05D003747 ORTHO05D005080 5.7e-53 211.5 244 50.8
PGR083G0723 Punica granatum HOM05D003747 ORTHO05D005080 5.7e-53 211.5 248 49.6
MD15G1017300 Malus domestica HOM05D003747 ORTHO05D005080 7.5e-53 211.1 243 49.0
Peaxi162Scf00640g00034 Petunia axillaris HOM05D003747 ORTHO05D005080 7.5e-53 211.1 246 48.8
Potri.002G027900 Populus trichocarpa HOM05D003747 ORTHO05D005080 7.5e-53 211.1 242 51.2
Medtr1g045490 Medicago truncatula HOM05D003747 ORTHO05D005080 9.8e-53 210.7 247 49.8
Ca_11895_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 1.3e-52 210.3 246 49.6
Ca_30287_v3 Cicer arietinum L. HOM05D003747 ORTHO05D005080 1.3e-52 210.3 246 49.6
Haze_22585 Corylus avellana HOM05D003747 ORTHO05D005080 1.3e-52 210.3 242 49.6
Gohir.D05G191500 Gossypium hirsutum HOM05D003747 ORTHO05D005080 1.3e-52 210.3 243 48.1
Gorai.009G196800 Gossypium raimondii HOM05D003747 ORTHO05D005080 1.3e-52 210.3 243 48.1
CANSAT25G1149 Cannabis sativa HOM05D003747 ORTHO05D005080 2.2e-52 209.5 246 48.4
Cfa013905 Carpinus fangiana HOM05D003747 ORTHO05D005080 2.2e-52 209.5 242 49.6
DCAR_022445 Daucus carota HOM05D003747 ORTHO05D005080 2.2e-52 209.5 246 49.6
Thecc.08G037800 Theobroma cacao HOM05D003747 ORTHO05D005080 2.2e-52 209.5 242 49.6
CiPaw.08G062900 Carya illinoinensis HOM05D003747 ORTHO05D005080 2.8e-52 209.1 245 48.6
Potri.005G234900 Populus trichocarpa HOM05D003747 ORTHO05D005080 2.8e-52 209.1 244 50.8
RcHm_v2.0_Chr6g0302151 Rosa chinensis HOM05D003747 ORTHO05D005080 3.7e-52 208.8 243 48.6
VMungo0720G2667 Vigna mungo HOM05D003747 ORTHO05D005080 3.7e-52 208.8 244 50.0
FAN27G0346 Fragaria x ananassa HOM05D003747 ORTHO05D005080 4.8e-52 208.4 252 49.6
FvH4_2g39050 Fragaria vesca HOM05D003747 ORTHO05D005080 8.3e-52 207.6 252 48.8
Gohir.A05G188400 Gossypium hirsutum HOM05D003747 ORTHO05D005080 8.3e-52 207.6 243 49.0
Sabra05G0181100 Salix brachista HOM05D003747 ORTHO05D005080 8.3e-52 207.6 242 49.2
TPR.G16935 Trifolium pratense HOM05D003747 ORTHO05D005080 8.3e-52 207.6 238 50.4
CSS0007586 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.1e-51 207.2 248 49.2
CSS0029452 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.1e-51 207.2 248 49.2
MD08G1018000 Malus domestica HOM05D003747 ORTHO05D005080 1.1e-51 207.2 243 49.8
CSS0038687 Camellia sinensis var. sinensis HOM05D003747 ORTHO05D005080 1.4e-51 206.8 203 54.2
TWI12G0622 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 1.8e-51 206.5 246 49.2
FAN15G1267 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.4e-51 206.1 252 48.4
SGA_v2.0_scaffold326G48749 Striga asiatica HOM05D003747 ORTHO05D005080 3.1e-51 205.7 246 51.6
Nitab4.5_0004368g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 4.1e-51 205.3 246 48.4
Phvul.007G231400 Phaseolus vulgaris HOM05D003747 ORTHO05D005080 9.1e-51 204.1 244 48.8
Zm00001eb011630 Zea mays HOM05D003747 ORTHO05D005080 9.1e-51 204.1 244 50.4
Dinv39487 Davidia involucrata HOM05D003747 ORTHO05D005080 2.0e-50 203.0 237 50.6
FAN20G0205 Fragaria x ananassa HOM05D003747 ORTHO05D005080 2.0e-50 203.0 252 49.2
Os03g0263900 Oryza sativa ssp. japonica HOM05D003747 ORTHO05D005080 2.0e-50 203.0 244 50.0
Nitab4.5_0000352g0010 Nicotiana tabacum HOM05D003747 ORTHO05D005080 4.5e-50 201.8 246 47.6
Psat0s1558g0040 Pisum sativum HOM05D003747 ORTHO05D005080 4.5e-50 201.8 239 50.2
arahy.Tifrunner.gnm1.ann1.K8KKRC Arachis hypogaea HOM05D003747 ORTHO05D005080 5.9e-50 201.4 234 51.3
arahy.Tifrunner.gnm1.ann1.VC055M Arachis hypogaea HOM05D003747 ORTHO05D005080 5.9e-50 201.4 234 51.3
CAN.G851.8 Capsicum annuum HOM05D003747 ORTHO05D005080 7.7e-50 201.1 246 46.7
Nitab4.5_0012730g0020 Nicotiana tabacum HOM05D003747 ORTHO05D005080 7.7e-50 201.1 246 48.4
Peaxi162Scf00287g00127 Petunia axillaris HOM05D003747 ORTHO05D005080 1.0e-49 200.7 246 48.8
Sabra02G0022000 Salix brachista HOM05D003747 ORTHO05D005080 1.0e-49 200.7 242 50.0
PGSC0003DMG400003764 Solanum tuberosum HOM05D003747 ORTHO05D005080 2.2e-49 199.5 246 47.6
TWI56G0727 Tripterygium wilfordii HOM05D003747 ORTHO05D005080 2.2e-49 199.5 246 48.0
Cpa.g.sc140.21 Carica papaya HOM05D003747 ORTHO05D005080 2.9e-49 199.1 240 47.1
Sp1g04000 Schrenkiella parvula HOM05D003747 ORTHO05D005080 2.9e-49 199.1 245 47.3
SpUn0024_0140 Schrenkiella parvula HOM05D003747 ORTHO05D005080 2.9e-49 199.1 245 47.3
THA.LOC104806907 Tarenaya hassleriana HOM05D003747 ORTHO05D005080 2.9e-49 199.1 242 46.7
A10p03680 Brassica napus HOM05D003747 ORTHO05D005080 3.8e-49 198.7 244 48.0
BraA10t42641Z Brassica rapa HOM05D003747 ORTHO05D005080 3.8e-49 198.7 244 48.0
Carub.0001s0442 Capsella rubella HOM05D003747 ORTHO05D005080 8.5e-49 197.6 245 45.7
CARHR004600 Cardamine hirsuta HOM05D003747 ORTHO05D005080 1.1e-48 197.2 246 45.5
HanXRQChr09g0269391 Helianthus annuus HOM05D003747 ORTHO05D005080 2.5e-48 196.1 248 47.6
BcaNung05933 Brassica carinata HOM05D003747 ORTHO05D005080 4.2e-48 195.3 242 47.1
C05p03390 Brassica napus HOM05D003747 ORTHO05D005080 4.2e-48 195.3 242 47.1
Thhalv10017699m.g Eutrema salsugineum HOM05D003747 ORTHO05D005080 4.2e-48 195.3 243 47.3
HanXRQChr05g0156281 Helianthus annuus HOM05D003747 ORTHO05D005080 4.2e-48 195.3 217 49.8
Sed0022188 Sechium edule HOM05D003747 ORTHO05D005080 7.2e-48 194.5 246 46.7
Duzib116G0012 Durio zibethinus HOM05D003747 ORTHO05D005080 1.2e-47 193.7 242 45.9
Lsat_1_v5_gn_4_116240 Lactuca sativa HOM05D003747 ORTHO05D005080 1.2e-47 193.7 249 47.4
AL1G14910 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 2.1e-47 193.0 245 44.9
ECA246G3046 Erigeron canadensis HOM05D003747 ORTHO05D005080 3.6e-47 192.2 251 46.6
Aa31LG1G19600 Aethionema arabicum HOM05D003747 ORTHO05D005080 4.7e-47 191.8 246 46.3
BolC5t29116H Brassica oleracea HOM05D003747 ORTHO05D005080 6.1e-47 191.4 238 47.1
Lsat_1_v5_gn_5_26081 Lactuca sativa HOM05D003747 ORTHO05D005080 6.1e-47 191.4 245 46.9
AT2G32450 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 1.0e-46 190.7 244 45.1
MSTRG.25220 Avicennia marina HOM05D003747 ORTHO05D005080 1.4e-46 190.3 249 46.2
Aa31LG5G4820 Aethionema arabicum HOM05D003747 ORTHO05D005080 1.8e-46 189.9 244 44.3
AT1G05150 Arabidopsis thaliana HOM05D003747 ORTHO05D005080 2.3e-46 189.5 245 43.7
Migut.N03134 Erythranthe guttata HOM05D003747 ORTHO05D005080 2.3e-46 189.5 246 46.3
AL4G27840 Arabidopsis lyrata HOM05D003747 ORTHO05D005080 4.0e-46 188.7 244 45.1
CARHR126280 Cardamine hirsuta HOM05D003747 ORTHO05D005080 4.0e-46 188.7 243 45.3
Carub.0004s1380 Capsella rubella HOM05D003747 ORTHO05D005080 1.5e-45 186.8 244 44.7
Sp4g14820 Schrenkiella parvula HOM05D003747 ORTHO05D005080 2.0e-45 186.4 243 44.0
Ah.05g171920 Amaranthus hybridus HOM05D003747 ORTHO05D005080 2.6e-45 186.0 245 44.9
SEGI_05010 Sequoiadendron giganteum HOM05D003747 ORTHO05D005080 2.6e-45 186.0 238 46.6
AUR62014428 Chenopodium quinoa HOM05D003747 ORTHO05D005080 5.7e-45 184.9 238 46.6
AUR62034569 Chenopodium quinoa HOM05D003747 ORTHO05D005080 7.5e-45 184.5 238 46.6
MSTRG.24265 Avicennia marina HOM05D003747 ORTHO05D005080 9.8e-45 184.1 246 45.1
Sc02g0005230 Simmondsia chinensis HOM05D003747 ORTHO05D005080 9.8e-45 184.1 234 46.2
EL10Ac1g00554 Beta vulgaris HOM05D003747 ORTHO05D005080 2.2e-44 183.0 245 45.3
Aqoxy5G01483 Aquilegia oxysepala HOM05D003747 ORTHO05D005080 3.1e-43 179.1 249 42.6
ATR0620G056 Amborella trichopoda HOM05D003747 ORTHO05D005080 4.1e-43 178.7 245 43.3
Zm00001eb398060 Zea mays HOM05D003747 ORTHO05D005080 1.7e-41 173.3 225 47.1
C08p01770 Brassica napus HOM05D003747 ORTHO05D016772 1.5e-40 170.2 193 50.3
BolC8t46977H Brassica oleracea HOM05D003747 ORTHO05D016772 4.3e-40 168.7 200 48.5
Rhsim06G0014300 Rhododendron simsii HOM05D003747 ORTHO05D000001 4.7e-39 165.2 204 46.6
SHI08097 Sapria himalayana HOM05D003747 ORTHO05D005080 6.1e-39 164.9 238 41.6
MBI16_g07670_MAGBIO Magnolia biondii HOM05D003747 ORTHO05D005080 1.3e-36 157.1 226 42.0
TAR376G0643 Trochodendron aralioides HOM05D003747 ORTHO05D005080 1.7e-36 156.8 249 40.2
Mapoly0016s0016 Marchantia polymorpha HOM05D003747 ORTHO05D005080 7.0e-35 151.4 233 39.1
Solyc04g081050.2 Solanum lycopersicum HOM05D003747 ORTHO05D005080 8.6e-33 144.4 84 78.6
Sopen04g034670 Solanum pennellii HOM05D003747 ORTHO05D005080 8.6e-33 144.4 84 78.6
HPP92_027211 Vanilla planifolia HOM05D003747 ORTHO05D016772 1.5e-29 133.7 83 71.1
Rhsim06G0014800 Rhododendron simsii HOM05D003747 ORTHO05D005080 5.4e-27 125.2 158 48.7
BcaC07g36860 Brassica carinata HOM05D003747 ORTHO05D016772 7.0e-27 124.8 81 69.1
SMO118G0420 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 7.0e-27 124.8 220 37.7
SMO331G0035 Selaginella moellendorffii HOM05D003747 ORTHO05D005080 6.0e-26 121.7 248 34.3
Pp3c1_8310 Physcomitrium patens HOM05D003747 ORTHO05D005080 3.0e-25 119.4 231 36.8
Cc10_g07350 Coffea canephora HOM05D003747 ORTHO05D005080 5.0e-25 118.6 226 38.1
Rhsim06G0013900 Rhododendron simsii HOM05D003747 ORTHO05D005080 2.5e-24 116.3 176 40.9
BcaC05g24429 Brassica carinata HOM05D003747 ORTHO05D016772 8.1e-23 111.3 87 57.5
Pp3c2_26690 Physcomitrium patens HOM05D003747 ORTHO05D005080 1.8e-22 110.2 231 35.1
AagrBONN_evm.TU.Sc2ySwM_228.5529 Anthoceros agrestis HOM05D003747 ORTHO05D005080 4.0e-22 109.0 232 33.2
unitig_899.g15538 Utricularia gibba HOM05D003747 ORTHO05D016772 8.9e-22 107.8 96 57.3
Nn6g32245 Nelumbo nucifera HOM05D003747 ORTHO05D005080 1.2e-21 107.5 65 81.5
unitig_746.g26812 Utricularia gibba HOM05D003747 ORTHO05D016772 1.2e-21 107.5 85 65.9
unitig_746.g26813 Utricularia gibba HOM05D003747 ORTHO05D005080 1.3e-20 104.0 67 73.1
Actinidia15389 Actinidia chinensis HOM05D003747 ORTHO05D005080 2.9e-20 102.8 67 71.6
HPP92_027212 Vanilla planifolia HOM05D003747 ORTHO05D051588 1.9e-19 100.1 67 71.6
CDE05G0031 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 5.4e-19 98.6 67 70.1
unitig_899.g15539 Utricularia gibba HOM05D003747 ORTHO05D005080 9.2e-19 97.8 67 67.2
ECA232G3638 Erigeron canadensis HOM05D003747 ORTHO05D005080 2.1e-18 96.7 67 70.1
Zm00001eb159690 Zea mays HOM05D003747 ORTHO05D051588 1.9e-16 90.1 56 75.0
HPP92_006843 Vanilla planifolia HOM05D003747 ORTHO05D005080 4.3e-16 89.0 210 32.4
CBR_g21825 Chara braunii HOM05D003747 ORTHO05D005080 9.2e-11 71.2 76 42.1
CDE02G1942 Ceratophyllum demersum HOM05D003747 ORTHO05D005080 1.2e-10 70.9 51 68.6
BcaC07g36859 Brassica carinata HOM05D003747 ORTHO05D016772 1.6e-10 70.5 43 79.1
BolC5t29114H Brassica oleracea HOM05D003747 ORTHO05D016772 3.1e-06 56.2 87 37.9


User provided reference genes

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