Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 0.0e+00 3892.4 2060 100.0
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 0.0e+00 1507.3 2296 47.9
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 0.0e+00 1337.4 2228 44.7
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 1155.6 2168 41.6
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 0.0e+00 1150.2 2045 43.0
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 0.0e+00 1125.2 2200 41.2
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 0.0e+00 1114.0 2102 42.3
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 0.0e+00 1095.1 2265 41.2
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 0.0e+00 1075.8 2152 40.6
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 3.1e-301 1039.6 2118 40.7
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 5.5e-290 1002.3 2144 39.5
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 6.7e-288 995.3 2213 39.7
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 4.1e-285 986.1 2122 39.4
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.0e-284 983.8 2049 39.9
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 4.1e-277 959.5 2121 39.7
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 1.5e-274 951.0 1942 40.7
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.6e-273 947.6 2149 39.1
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.2e-271 941.4 2210 38.7
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 2.7e-265 920.2 2184 38.1
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 2.6e-263 913.7 1809 41.3
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.7e-259 901.0 2234 37.7
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.8e-253 880.9 1154 52.9
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 2.8e-249 867.1 2220 37.3
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.6e-249 866.7 2221 37.1
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.7e-249 866.3 2008 37.9
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 4.0e-248 863.2 1969 39.0
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.3e-246 858.2 2303 35.1
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 7.8e-244 849.0 1943 38.5
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 6.0e-236 822.8 2189 37.0
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 1.2e-231 808.5 1938 37.8
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 3.5e-228 797.0 792 64.3
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.7e-227 794.7 1884 38.2
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.1e-226 792.0 1910 38.0
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 2.4e-224 784.3 1291 46.6
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.6e-223 780.8 1874 38.2
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 7.6e-223 779.2 1286 46.0
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.1e-220 771.2 2170 35.2
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.4e-216 757.7 1888 37.5
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 1.7e-206 724.9 747 61.7
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 3.0e-203 714.1 1893 37.1
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.8e-201 707.6 860 56.2
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 2.2e-198 698.0 1889 36.6
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.9e-198 697.6 1928 35.9
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 4.2e-197 693.7 1902 36.3
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 4.6e-196 690.3 1896 35.8
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 8.2e-193 679.5 2062 35.6
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.4e-192 678.7 2118 34.1
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 2.9e-190 671.0 1928 34.6
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.2e-188 665.6 1831 35.8
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 6.1e-188 663.3 1216 43.7
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.3e-187 662.1 1821 36.4
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 9.4e-181 639.4 808 56.2
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.4e-179 635.6 2116 34.3
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 3.3e-178 630.9 1920 34.1
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 6.9e-176 623.2 2024 33.8
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 2.0e-175 621.7 1874 33.4
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 4.5e-175 620.5 1282 42.1
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.7e-174 618.6 2118 33.9
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.1e-172 611.7 2120 33.5
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.8e-171 608.6 830 53.4
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 1.1e-170 605.9 1908 33.7
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.3e-170 604.4 1429 38.4
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 4.8e-169 600.5 992 45.2
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 5.9e-167 593.6 2160 31.9
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 3.2e-165 587.8 940 46.7
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 1.2e-164 585.9 828 52.3
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 6.3e-161 573.5 2054 32.8
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.1e-160 571.2 2200 31.6
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 8.0e-156 556.6 1978 31.0
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 8.0e-156 556.6 2042 32.6
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.8e-155 555.4 823 48.6
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 8.8e-155 553.1 477 70.4
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 9.1e-152 543.1 1004 44.2
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.6e-151 542.3 844 47.9
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 2.9e-150 538.1 1779 33.8
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 3.6e-148 531.2 2077 31.8
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 1.8e-147 528.9 906 43.8
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.8e-147 528.9 906 43.8
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 1.8e-147 528.9 836 48.3
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 9.8e-146 523.1 937 45.0
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.3e-142 512.7 935 44.8
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 6.6e-142 510.4 1801 31.7
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 4.3e-141 507.7 1920 31.4
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 1.2e-138 499.6 1859 32.0
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.0e-138 498.8 2235 30.2
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.4e-136 492.7 871 43.1
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.8e-136 492.3 797 44.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 4.6e-135 487.6 853 43.6
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 3.0e-134 485.0 821 44.5
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 5.6e-133 480.7 821 44.2
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 4.7e-132 477.6 924 43.4
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 3.1e-131 474.9 707 44.4
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 2.6e-130 471.9 833 45.7
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 3.4e-130 471.5 986 41.8
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 6.0e-127 460.7 815 45.9
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.5e-125 456.1 808 45.9
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.6e-125 454.1 755 42.9
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.7e-121 442.6 506 52.8
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.2e-121 442.2 907 38.8
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 2.2e-121 442.2 746 47.3
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.6e-119 436.0 487 58.3
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.3e-118 432.2 792 41.3
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 1.6e-116 426.0 1090 34.2
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 8.1e-116 423.7 908 40.1
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.3e-113 416.4 1996 29.5
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 8.4e-113 413.7 922 41.0
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 2.8e-100 372.1 961 36.5
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.5e-98 364.8 971 36.5
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 7.9e-95 354.0 720 38.6
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.3e-89 336.7 1697 28.3
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 4.6e-87 328.2 657 43.2
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 3.4e-82 312.0 889 36.9
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 2.3e-78 299.3 1443 29.0
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.9e-72 279.6 334 57.8
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.2e-71 276.9 255 59.2
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 3.8e-65 255.4 1491 27.4
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 2.3e-62 246.1 281 60.9
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 8.8e-62 244.2 846 30.5
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 4.7e-55 221.9 593 38.8
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 2.0e-50 206.5 749 31.5
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 4.2e-48 198.7 510 37.5
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 4.7e-39 168.7 215 62.3
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 4.0e-38 165.6 213 46.9
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.5e-37 163.7 159 54.7
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 2.2e-36 159.8 145 60.0
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.6e-34 153.7 216 42.1
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 3.3e-32 146.0 100 75.0
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 2.8e-31 142.9 419 33.9
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 6.1e-31 141.7 197 60.9
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 4.4e-29 135.6 938 26.4
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 9.8e-29 134.4 164 49.4
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 7.5e-21 108.2 231 35.5
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-20 107.1 99 63.6
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 2.2e-20 106.7 133 45.1
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.0e-18 100.1 423 28.4
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.3e-17 97.4 116 46.6
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 2.0e-13 83.6 134 45.5
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 1.7e-09 70.5 136 33.1
MD08G1160100 Malus domestica HOM05D000237 ORTHO05D006530 5.0e-09 68.9 153 34.0
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.0e-09 68.9 149 31.5


User provided reference genes

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