Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.7e-266 920.6 464 100.0
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.9e-214 749.2 464 81.9
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 3.2e-198 695.3 467 77.1
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 6.8e-196 687.6 464 74.8
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.1e-193 678.7 470 73.6
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 4.1e-193 678.3 465 74.2
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.2e-192 676.8 464 74.4
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.5e-192 675.2 465 74.0
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 6.8e-188 661.0 465 73.3
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 3.4e-187 658.7 464 71.6
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 7.5e-187 657.5 464 72.2
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.7e-186 656.4 464 72.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 3.7e-186 655.2 464 72.4
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.5e-182 642.5 439 74.9
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.3e-182 642.1 462 70.1
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.7e-181 638.3 462 69.9
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 2.6e-179 632.5 463 69.3
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 7.5e-179 630.9 466 68.5
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.7e-178 628.6 466 69.1
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-177 627.1 466 68.9
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 5.4e-177 624.8 493 67.5
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-176 623.6 466 68.5
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.6e-176 623.2 462 68.6
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 3.5e-176 622.1 471 67.9
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 3.5e-176 622.1 467 67.5
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.3e-175 620.2 467 66.8
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.7e-175 619.8 467 69.0
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.3e-175 619.4 460 68.3
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 5.0e-175 618.2 465 69.0
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.6e-175 617.8 466 68.2
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 8.6e-175 617.5 460 68.5
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.5e-174 615.9 412 78.6
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.3e-174 615.1 463 67.4
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 4.3e-174 615.1 466 68.2
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 7.3e-174 614.4 465 68.8
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 3.6e-173 612.1 467 67.0
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.4e-172 610.1 475 66.7
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 5.2e-172 608.2 466 67.8
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.2e-171 607.1 460 66.1
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.0e-171 606.3 466 67.6
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 4.4e-171 605.1 465 68.6
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 9.8e-171 604.0 466 67.2
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 9.8e-171 604.0 466 67.2
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.2e-170 602.8 466 67.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.9e-170 602.4 467 65.5
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.4e-169 600.1 460 66.1
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.9e-169 599.7 466 66.7
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.4e-169 599.4 460 65.9
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.4e-169 599.4 460 65.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 4.1e-169 598.6 460 65.9
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.6e-168 596.7 467 64.2
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.6e-168 595.1 463 67.0
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.0e-167 594.0 463 66.5
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.7e-167 593.2 460 65.9
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.5e-166 590.1 464 67.0
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.5e-166 589.3 464 66.6
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 7.3e-166 587.8 466 65.5
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 7.3e-166 587.8 464 65.9
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 9.5e-166 587.4 466 63.5
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.8e-165 585.9 450 66.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.4e-164 583.6 460 64.8
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 3.1e-164 582.4 468 65.0
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 5.4e-161 571.6 421 69.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 1.3e-159 567.0 463 61.1
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 6.6e-159 564.7 421 69.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.5e-158 560.8 463 62.9
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 9.5e-158 560.8 463 62.9
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 3.1e-156 555.8 466 63.7
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 4.4e-155 552.0 482 58.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.7e-154 550.1 483 59.0
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 2.9e-154 549.3 430 64.0
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 3.7e-154 548.9 466 60.1
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 8.4e-154 547.7 477 59.3
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.0e-151 540.8 468 61.8
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.1e-150 537.3 486 55.3
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.1e-150 537.3 462 58.0
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.5e-150 536.2 462 58.2
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.3e-150 535.8 473 60.0
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.3e-150 535.4 433 63.5
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 5.6e-150 535.0 447 64.7
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 4.7e-149 531.9 464 59.5
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.1e-148 529.3 381 71.1
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 4.0e-148 528.9 463 57.7
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.6e-147 526.2 466 63.1
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.2e-146 523.1 470 61.3
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.1e-145 520.8 463 61.1
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.2e-145 519.2 461 56.2
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 9.3e-145 517.7 419 63.7
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.3e-143 513.8 469 60.6
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 5.1e-143 511.9 464 55.6
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 5.1e-143 511.9 467 58.5
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.5e-142 509.6 478 55.0
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.1e-141 506.5 484 53.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.1e-141 506.5 480 54.0
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.8e-141 506.1 485 53.8
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 9.0e-140 501.1 466 55.6
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.4e-139 499.2 505 57.2
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.8e-139 498.4 460 56.3
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 7.6e-139 498.0 407 62.2
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.9e-138 496.1 482 53.5
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 3.8e-138 495.7 482 53.5
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.4e-137 493.8 414 60.9
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.4e-137 491.9 424 59.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.4e-137 491.9 463 56.4
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.6e-136 490.3 463 56.6
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 3.5e-136 489.2 425 60.9
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.3e-135 487.3 425 60.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.5e-134 483.0 456 55.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 3.6e-133 479.2 358 70.1
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.8e-133 478.8 338 71.9
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 2.9e-130 469.5 467 55.0
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 4.2e-129 465.7 375 65.6
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.3e-127 460.7 467 55.0
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.3e-127 459.9 330 72.1
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 7.4e-126 454.9 461 55.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.6e-123 446.4 416 57.2
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.9e-121 440.3 451 50.8
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.3e-121 438.0 383 60.8
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.0e-119 433.0 362 61.3
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 3.1e-100 369.8 353 57.5
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.3e-100 369.0 280 64.6
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 6.5e-98 362.1 286 62.9
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.5e-97 360.1 280 64.3
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.6e-96 357.5 280 63.9
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.4e-95 354.4 308 60.1
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 7.0e-92 342.0 293 58.4
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.6e-91 340.1 280 60.7
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 8.0e-88 328.6 231 68.0
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 8.8e-87 325.1 468 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 9.7e-86 321.6 357 47.1
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 9.7e-86 321.6 382 47.9
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.6e-80 303.1 367 47.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.6e-75 287.7 271 55.4
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 4.2e-73 279.6 207 65.7
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.6e-72 277.7 232 59.5
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.9e-69 266.2 187 76.5
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.3e-69 265.8 207 70.0
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.4e-68 264.6 186 75.8
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 5.4e-68 262.7 163 73.6
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.7e-66 257.7 185 74.6
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 3.8e-66 256.5 187 74.3
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 5.0e-66 256.1 539 36.7
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 8.6e-66 255.4 186 73.1
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.3e-63 247.3 175 76.0
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.0e-58 231.9 132 90.2
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.5e-57 228.0 297 44.8
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.4e-55 221.5 171 69.6
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.5e-51 206.8 214 55.1
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.9e-49 201.1 212 53.8
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 6.2e-48 196.1 154 68.8
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 6.8e-47 192.6 132 78.8
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 2.2e-45 187.6 155 57.4
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 2.3e-42 177.6 183 59.0
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 5.1e-42 176.4 99 90.9
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 7.3e-41 172.6 496 28.8
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 3.3e-33 147.1 116 62.1
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 5.6e-33 146.4 136 60.3
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 3.6e-32 143.7 159 50.3
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 2.7e-27 127.5 175 44.6
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 9.6e-25 119.0 99 60.6
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 3.8e-21 107.1 68 80.9
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.4e-20 104.4 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.2e-20 104.0 56 96.4
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 3.5e-19 100.5 245 32.2
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-12 78.6 74 58.1
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 2.7e-11 74.3 69 49.3
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 7.9e-11 72.8 318 27.0
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 4.3e-09 67.0 87 46.0
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.8e-07 61.6 50 62.0


User provided reference genes

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