Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 9.8e-250 866.3 430 100.0
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 1.7e-193 679.5 431 77.0
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 3.8e-193 678.3 420 78.6
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 1.4e-192 676.4 429 77.2
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 5.1e-190 667.9 426 76.3
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 1.1e-189 666.8 419 79.0
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 7.4e-189 664.1 427 76.1
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 9.7e-189 663.7 426 75.6
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 4.8e-188 661.4 418 76.6
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 6.3e-188 661.0 427 75.6
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 1.8e-187 659.4 432 75.9
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 1.8e-187 659.4 426 75.1
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 3.1e-187 658.7 429 75.3
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 4.1e-187 658.3 427 76.1
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 1.5e-186 656.4 427 75.2
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 3.4e-186 655.2 424 75.0
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 5.9e-186 654.4 431 73.8
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 5.9e-186 654.4 426 74.4
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 5.9e-186 654.4 430 74.9
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 1.4e-184 649.8 429 73.4
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 1.9e-184 649.4 431 72.6
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 1.9e-184 649.4 421 75.1
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 3.2e-184 648.7 421 75.1
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 3.2e-184 648.7 454 70.7
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.2e-183 646.7 421 75.1
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 1.6e-183 646.4 426 72.8
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 3.6e-183 645.2 432 73.6
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 3.6e-183 645.2 431 73.8
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 3.6e-183 645.2 431 73.5
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 3.0e-182 642.1 431 72.9
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 2.0e-181 639.4 439 72.7
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 7.4e-181 637.5 427 73.3
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 9.7e-181 637.1 426 73.0
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 1.7e-180 636.3 420 71.9
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 2.2e-180 636.0 434 71.7
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 3.7e-180 635.2 426 72.8
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 1.4e-179 633.3 422 73.9
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 1.8e-179 632.9 434 71.4
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 2.4e-179 632.5 430 72.8
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 4.1e-179 631.7 421 73.4
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 4.1e-179 631.7 421 73.4
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 9.1e-179 630.6 436 71.1
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 2.6e-178 629.0 426 72.1
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 3.5e-178 628.6 426 72.5
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.0e-177 627.1 430 69.8
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 2.9e-177 625.5 422 72.0
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 1.1e-176 623.6 420 71.9
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 5.5e-176 621.3 422 71.6
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 1.2e-175 620.2 421 71.3
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 1.6e-175 619.8 430 69.3
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 1.6e-175 619.8 430 69.3
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 2.1e-175 619.4 430 69.1
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 4.7e-175 618.2 418 70.1
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 6.1e-175 617.8 422 71.6
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 8.0e-175 617.5 426 71.8
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 2.3e-174 615.9 418 69.6
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 3.9e-174 615.1 418 69.6
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 5.2e-174 614.8 453 66.4
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 4.4e-173 611.7 430 70.7
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 4.4e-173 611.7 422 70.9
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 7.4e-173 610.9 419 70.6
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 9.7e-173 610.5 427 70.3
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 1.7e-172 609.8 422 71.1
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 2.2e-172 609.4 422 69.2
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 2.2e-172 609.4 438 68.5
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 2.8e-172 609.0 420 70.5
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 3.7e-172 608.6 412 72.6
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 4.8e-172 608.2 433 68.1
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 6.3e-172 607.8 420 71.7
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 8.2e-172 607.4 421 70.8
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 2.4e-171 605.9 447 67.6
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 2.4e-171 605.9 418 67.9
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 4.1e-171 605.1 421 71.7
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 4.1e-171 605.1 531 60.5
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 5.3e-171 604.7 421 71.7
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 9.1e-171 604.0 421 71.5
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 2.0e-170 602.8 418 70.6
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 2.0e-170 602.8 421 71.7
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 1.0e-169 600.5 421 70.1
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.0e-169 600.5 420 70.7
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.3e-169 600.1 420 70.7
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 5.0e-169 598.2 434 68.9
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 6.5e-169 597.8 420 70.5
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 1.5e-168 596.7 422 69.2
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 1.9e-168 596.3 431 69.1
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 2.5e-168 595.9 429 66.2
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 5.5e-168 594.7 426 68.3
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 5.5e-168 594.7 426 68.3
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 1.6e-167 593.2 420 68.1
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 6.1e-167 591.3 430 68.1
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 1.8e-166 589.7 482 61.6
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 2.3e-166 589.3 422 68.5
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 2.6e-165 585.9 418 67.2
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 1.3e-164 583.6 422 67.5
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 6.3e-164 581.3 428 66.8
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 4.1e-163 578.6 417 68.6
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 2.7e-162 575.9 419 68.0
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 2.3e-158 562.8 419 65.6
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 3.0e-158 562.4 414 65.7
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 6.8e-158 561.2 438 61.0
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 9.1e-155 550.8 422 62.3
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 5.9e-146 521.5 334 76.0
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 1.6e-143 513.5 430 59.5
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 1.8e-142 510.0 429 56.9
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 6.4e-140 501.5 428 58.9
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 2.0e-138 496.5 354 67.8
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 1.2e-135 487.3 422 55.5
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 8.9e-134 481.1 421 55.8
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 1.2e-133 480.7 437 59.3
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 1.3e-129 467.2 439 56.3
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 5.4e-123 445.3 425 49.9
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 1.6e-122 443.7 290 73.1
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 3.5e-122 442.6 350 63.7
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 1.6e-119 433.7 270 78.1
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 1.7e-113 413.7 418 54.3
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 3.0e-113 412.9 268 75.4
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 2.5e-91 340.1 196 82.7
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 8.7e-89 331.6 421 44.2
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 1.4e-75 287.7 238 57.6
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 2.4e-70 270.4 182 74.7
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 5.9e-69 265.8 291 51.5
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 2.0e-48 197.6 136 71.3
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 4.4e-32 143.3 100 65.0
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 1.2e-29 135.2 92 67.4
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 5.9e-29 132.9 88 71.6
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 3.6e-26 123.6 88 65.9
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 1.0e-12 79.0 362 24.0
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 4.3e-11 73.6 89 48.3
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 2.2e-07 61.2 41 65.9


User provided reference genes

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