Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.5e-209 731.9 369 100.0
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.5e-163 578.6 327 85.6
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.8e-150 534.6 368 73.6
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 2.9e-149 532.3 382 71.5
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.4e-148 528.1 337 77.7
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.6e-147 526.6 329 78.4
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 4.6e-147 525.0 337 76.3
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.1e-145 520.4 336 76.2
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 1.9e-145 519.6 351 73.5
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.9e-145 519.6 350 72.6
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 2.8e-144 515.8 377 70.0
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 2.4e-143 512.7 372 70.4
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 4.0e-143 511.9 372 69.4
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 5.3e-143 511.5 350 71.1
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 9.0e-143 510.8 372 69.6
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 3.4e-142 508.8 381 69.6
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 5.8e-142 508.1 373 69.4
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 5.8e-142 508.1 361 69.3
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 9.9e-142 507.3 337 72.4
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 9.9e-142 507.3 335 74.0
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.3e-141 506.9 372 69.1
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 2.2e-141 506.1 373 70.5
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 3.8e-141 505.4 327 74.6
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 4.9e-141 505.0 332 73.8
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 3.2e-140 502.3 367 67.8
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 2.7e-139 499.2 349 69.1
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 2.7e-139 499.2 338 71.3
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 7.9e-139 497.7 337 71.2
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.3e-138 496.9 338 71.0
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.8e-138 496.5 338 73.4
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 1.8e-138 496.5 362 68.8
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 1.8e-138 496.5 352 69.3
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 3.0e-138 495.7 325 72.0
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 5.1e-138 495.0 329 72.0
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 6.7e-138 494.6 352 69.3
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.3e-137 491.9 351 70.7
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 4.3e-137 491.9 364 69.5
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 4.3e-137 491.9 337 70.9
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.6e-137 491.5 351 70.1
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 7.4e-137 491.1 355 71.3
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 1.3e-136 490.3 353 69.1
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 4.8e-136 488.4 332 70.5
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 4.8e-136 488.4 336 68.8
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 8.2e-136 487.6 325 71.1
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 3.1e-135 485.7 326 73.6
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 1.5e-134 483.4 329 72.3
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 1.5e-134 483.4 361 65.4
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 2.6e-134 482.6 345 66.4
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 2.6e-134 482.6 365 64.9
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.4e-134 482.3 325 69.5
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 7.6e-134 481.1 339 69.6
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 7.6e-134 481.1 357 66.7
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 1.7e-133 479.9 328 69.2
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.7e-133 479.9 333 70.0
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 2.9e-133 479.2 329 69.0
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 8.4e-133 477.6 327 69.4
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.9e-132 476.5 365 64.4
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 4.2e-132 475.3 337 67.1
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 5.5e-132 474.9 337 67.7
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 1.2e-131 473.8 373 62.5
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.2e-131 473.8 365 64.1
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 1.2e-131 473.8 330 68.8
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.1e-131 473.0 354 67.2
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 2.7e-131 472.6 331 71.6
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 5.1e-130 468.4 310 73.9
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.1e-129 467.2 372 64.5
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 8.2e-128 461.1 333 68.8
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 1.4e-127 460.3 372 63.4
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.4e-127 459.5 333 68.5
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.2e-126 457.2 350 65.4
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 2.2e-125 453.0 328 65.9
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 4.2e-124 448.7 317 69.7
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 1.6e-123 446.8 349 65.0
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 2.7e-123 446.0 356 63.2
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 6.1e-123 444.9 354 64.1
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 3.0e-122 442.6 331 65.3
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 3.0e-122 442.6 315 68.9
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 3.9e-122 442.2 324 68.8
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 5.1e-122 441.8 315 68.9
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 5.1e-122 441.8 445 53.9
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 8.8e-122 441.0 338 63.3
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 1.1e-121 440.7 342 62.9
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 2.0e-121 439.9 352 62.8
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 5.7e-121 438.3 328 68.0
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 5.7e-121 438.3 361 62.0
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 5.7e-121 438.3 317 67.2
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 7.4e-121 438.0 341 65.4
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 7.4e-121 438.0 292 73.6
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 2.2e-120 436.4 364 63.5
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.6e-118 429.5 331 64.7
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 3.4e-118 429.1 587 44.6
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 7.7e-118 427.9 361 60.7
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 1.1e-116 424.1 337 62.9
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 7.2e-116 421.4 267 73.8
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.0e-114 417.5 328 63.7
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.3e-114 416.4 321 65.4
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 3.9e-114 415.6 337 61.4
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 6.7e-114 414.8 311 67.8
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 6.7e-114 414.8 311 67.8
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 4.4e-113 412.1 367 57.8
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 6.3e-112 408.3 259 74.5
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 6.3e-112 408.3 340 60.6
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 8.2e-112 407.9 288 67.7
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.1e-111 407.5 290 68.6
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 1.0e-109 401.0 337 61.7
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 2.2e-109 399.8 331 58.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.9e-109 399.4 264 71.6
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.1e-108 397.5 343 57.1
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 3.6e-107 392.5 300 65.3
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 4.4e-105 385.6 239 72.0
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 1.1e-103 380.9 279 66.7
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 2.0e-102 376.7 332 59.6
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 9.4e-100 367.9 324 57.7
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 2.7e-99 366.3 371 54.2
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 4.4e-97 359.0 362 53.6
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 2.4e-95 353.2 298 59.4
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 7.0e-95 351.7 331 51.1
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 2.3e-90 336.7 335 49.9
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 8.8e-90 334.7 251 62.9
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 7.0e-87 325.1 200 77.0
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 9.1e-87 324.7 205 74.1
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 9.1e-87 324.7 342 47.4
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.9e-76 290.4 177 76.8
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.6e-75 287.3 304 51.0
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 5.8e-73 278.9 207 69.1
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 5.8e-73 278.9 193 70.5
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 7.5e-73 278.5 379 46.2
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 2.3e-69 266.9 245 53.9
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.2e-67 261.2 283 43.1
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.5e-65 254.2 198 70.7
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 4.0e-58 229.6 289 42.6
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.6e-57 226.9 147 72.1
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 9.2e-55 218.4 257 42.8
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 6.6e-53 212.2 161 60.2
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 2.1e-51 207.2 212 55.7
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 3.1e-50 203.4 286 38.5
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 5.8e-49 199.1 211 51.2
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 7.6e-49 198.7 213 51.2
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.6e-46 191.0 131 71.0
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.9e-40 170.2 165 52.1
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 2.1e-35 154.1 300 34.0
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 3.8e-32 143.3 154 51.3
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 2.1e-30 137.5 81 81.5
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 7.6e-25 119.0 120 51.7
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 1.6e-22 111.3 181 37.0
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.0e-21 107.1 87 62.1
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 3.0e-21 107.1 87 62.1
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 8.7e-21 105.5 276 28.3
Dinv27372 Davidia involucrata HOM05D004729 ORTHO05D005451 1.4e-15 88.2 58 79.3
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.5e-15 87.4 113 47.8
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 3.9e-13 80.1 72 54.2
Sabra02G0069200 Salix brachista HOM05D004729 ORTHO05D005451 6.7e-13 79.3 49 79.6
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 9.7e-12 75.5 46 71.7
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.6e-11 74.7 75 53.3


User provided reference genes

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