Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR628G0092 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.5e-155 551.6 282 100.0
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 1.4e-79 300.4 218 68.3
AUR62016883 Chenopodium quinoa HOM05D005996 ORTHO05D007507 1.4e-74 283.9 262 56.1
Nn5g29328 Nelumbo nucifera HOM05D005996 ORTHO05D007507 9.8e-73 277.7 164 84.1
FAN15G0761 Fragaria x ananassa HOM05D005996 ORTHO05D007507 8.6e-69 264.6 220 62.7
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 1.5e-68 263.8 177 72.9
FAN20G0865 Fragaria x ananassa HOM05D005996 ORTHO05D007507 1.9e-68 263.5 175 73.1
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 3.3e-68 262.7 191 66.0
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 3.3e-68 262.7 216 63.0
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 5.6e-68 261.9 165 79.4
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 7.3e-68 261.5 216 63.0
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 7.3e-68 261.5 216 63.0
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 1.2e-67 260.8 203 64.5
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 1.6e-67 260.4 164 81.1
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 8.0e-67 258.1 175 70.9
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.0e-66 257.7 232 59.1
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 1.4e-66 257.3 165 77.0
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 3.1e-66 256.1 174 70.7
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 4.0e-66 255.8 202 63.4
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 6.8e-66 255.0 169 74.0
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 1.5e-65 253.8 164 77.4
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 2.6e-65 253.1 175 71.4
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 1.7e-64 250.4 169 71.6
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 6.4e-64 248.4 171 70.2
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 8.3e-64 248.1 163 76.1
FAN27G2880 Fragaria x ananassa HOM05D005996 ORTHO05D007507 8.3e-64 248.1 210 61.9
Prupe.8G158300 Prunus persica HOM05D005996 ORTHO05D007507 4.1e-63 245.7 165 73.9
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 5.4e-63 245.4 172 69.8
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 9.2e-63 244.6 165 73.9
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 9.2e-63 244.6 171 70.2
COL.COLO4_17237 Corchorus olitorius HOM05D005996 ORTHO05D007507 2.0e-62 243.4 166 72.9
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 2.7e-62 243.0 164 72.6
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 4.6e-62 242.3 232 56.5
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 1.3e-61 240.7 162 70.4
Gohir.D13G094700 Gossypium hirsutum HOM05D005996 ORTHO05D007507 2.3e-61 240.0 164 74.4
Gorai.001G246900 Gossypium raimondii HOM05D005996 ORTHO05D007507 3.0e-61 239.6 164 74.4
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 3.0e-61 239.6 165 72.1
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 3.9e-61 239.2 178 64.0
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 5.0e-61 238.8 189 59.8
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 8.6e-61 238.0 164 70.1
Gohir.A13G098800 Gossypium hirsutum HOM05D005996 ORTHO05D007507 8.6e-61 238.0 161 75.2
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 1.1e-60 237.7 165 70.3
ATR0955G004 Amborella trichopoda HOM05D005996 ORTHO05D007507 3.3e-60 236.1 166 69.3
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 3.3e-60 236.1 164 72.0
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 4.3e-60 235.7 163 69.3
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 5.6e-60 235.3 161 70.8
PSO170G2255 Papaver somniferum HOM05D005996 ORTHO05D007507 7.3e-60 235.0 164 70.7
Duzib248G0011 Durio zibethinus HOM05D005996 ORTHO05D007507 1.2e-59 234.2 167 70.7
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 1.6e-59 233.8 164 69.5
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.6e-59 233.8 165 70.9
Medtr4g072990 Medicago truncatula HOM05D005996 ORTHO05D007507 4.7e-59 232.3 165 69.7
TPR.G39263 Trifolium pratense HOM05D005996 ORTHO05D007507 4.7e-59 232.3 219 57.1
PSO700G0013 Papaver somniferum HOM05D005996 ORTHO05D007507 6.2e-59 231.9 164 69.5
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 8.1e-59 231.5 152 75.0
Lalb_Chr01g0001941 Lupinus albus HOM05D005996 ORTHO05D007507 8.1e-59 231.5 164 69.5
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 1.4e-58 230.7 163 70.6
Psat7g180560 Pisum sativum HOM05D005996 ORTHO05D007507 3.1e-58 229.6 165 68.5
PGR142G2892 Punica granatum HOM05D005996 ORTHO05D007507 3.1e-58 229.6 166 65.7
Sopen01g053080 Solanum pennellii HOM05D005996 ORTHO05D007507 4.0e-58 229.2 163 69.9
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 1.2e-57 227.6 165 66.1
Solyc01g111020.3 Solanum lycopersicum HOM05D005996 ORTHO05D007507 1.5e-57 227.3 163 69.3
Atru.chr5.3202 Acer truncatum HOM05D005996 ORTHO05D007507 2.0e-57 226.9 159 73.6
Lj3g0021328 Lotus japonicus HOM05D005996 ORTHO05D007507 2.6e-57 226.5 167 68.3
THA.LOC104807280 Tarenaya hassleriana HOM05D005996 ORTHO05D007507 2.6e-57 226.5 163 68.1
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 5.8e-57 225.3 155 72.3
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 7.5e-57 224.9 165 68.5
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 2.9e-56 223.0 162 67.9
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 2.9e-56 223.0 143 76.2
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 4.9e-56 222.2 163 67.5
HanXRQChr10g0296321 Helianthus annuus HOM05D005996 ORTHO05D007507 1.1e-55 221.1 164 68.3
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 2.4e-55 219.9 165 66.7
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 3.2e-55 219.5 164 64.6
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 9.2e-55 218.0 172 65.7
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 1.2e-54 217.6 163 66.3
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 2.1e-54 216.9 232 50.0
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 6.6e-53 211.8 165 64.2
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 5.6e-52 208.8 164 62.2
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 5.6e-52 208.8 164 62.2
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 5.6e-52 208.8 164 62.8
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 1.2e-51 207.6 157 65.0
Thhalv10024275m.g Eutrema salsugineum HOM05D005996 ORTHO05D007507 1.6e-51 207.2 164 62.8
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 2.8e-51 206.5 164 63.4
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 2.8e-51 206.5 164 63.4
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 2.8e-51 206.5 164 63.4
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 6.2e-51 205.3 164 60.4
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 6.2e-51 205.3 164 62.8
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 1.8e-50 203.8 162 64.8
Carub.0007s0547 Capsella rubella HOM05D005996 ORTHO05D007507 2.3e-50 203.4 164 61.6
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 3.1e-50 203.0 239 46.4
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 2.6e-49 199.9 165 63.0
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 1.3e-48 197.6 166 62.0
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 8.4e-48 194.9 173 59.5
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 4.1e-47 192.6 189 55.0
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.5e-46 189.5 124 75.8
BcaNung04307 Brassica carinata HOM05D005996 ORTHO05D007507 1.3e-45 187.6 154 62.3
Nitab4.5_0000980g0320 Nicotiana tabacum HOM05D005996 ORTHO05D007507 6.6e-45 185.3 125 72.0
Lj5C186G10 Lonicera japonica HOM05D005996 ORTHO05D007507 8.6e-45 184.9 124 76.6
Nitab4.5_0000980g0280 Nicotiana tabacum HOM05D005996 ORTHO05D007507 1.8e-42 177.2 122 70.5
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 4.0e-42 176.0 123 72.4
SMO340G0075 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.5e-25 120.9 194 40.2
SEGI_22573 Sequoiadendron giganteum HOM05D005996 ORTHO05D007507 3.4e-25 119.8 108 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2051 Anthoceros agrestis HOM05D005996 ORTHO05D007507 3.2e-23 113.2 180 41.1
Pp3c10_19570 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.5e-20 104.4 174 37.9
Pp3c12_14320 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.3e-19 101.3 129 42.6
SMO240G0032 Selaginella moellendorffii HOM05D005996 ORTHO05D007507 1.4e-18 97.8 193 37.3
Mapoly0039s0079 Marchantia polymorpha HOM05D005996 ORTHO05D007507 1.3e-16 91.3 168 33.9
Mapoly0039s0078 Marchantia polymorpha HOM05D005996 ORTHO05D007507 2.5e-15 87.0 128 41.4
Pp3c7_22430 Physcomitrium patens HOM05D005996 ORTHO05D007507 1.3e-13 81.3 196 29.1
CBR_g66762 Chara braunii HOM05D005996 ORTHO05D007507 1.8e-13 80.9 210 29.5
MCO09G858 Micromonas commoda HOM05D005996 ORTHO05D007507 6.9e-10 68.9 234 29.1
MBI09_g46961_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.4e-09 66.6 39 79.5
ATR0913G001 Amborella trichopoda HOM05D005996 ORTHO05D007507 1.2e-06 58.2 39 64.1
Pp3c2_12230 Physcomitrium patens HOM05D000001 ORTHO05D000003 2.7e-06 57.0 181 25.4


User provided reference genes

Program Settings