Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.1e-189 666.4 324 100.0
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.2e-177 625.5 320 94.1
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.4e-176 622.1 320 91.9
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.2e-176 621.7 317 93.4
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 4.2e-176 621.3 320 92.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.2e-175 619.8 320 92.8
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 3.5e-175 618.2 320 92.5
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 6.0e-175 617.5 320 91.6
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.3e-174 616.3 320 91.9
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.3e-174 615.5 320 90.9
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.1e-173 613.2 320 91.6
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 2.1e-172 609.0 320 90.9
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 4.7e-172 607.8 320 90.0
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 4.7e-172 607.8 317 91.8
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.4e-171 606.3 320 90.6
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 3.1e-171 605.1 320 89.7
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.3e-171 604.4 320 90.3
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 5.3e-171 604.4 320 90.0
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 5.3e-171 604.4 317 90.9
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 6.9e-171 604.0 320 87.8
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 6.9e-171 604.0 320 89.4
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 1.2e-170 603.2 320 89.7
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.2e-170 603.2 321 89.7
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.5e-170 602.8 320 90.0
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.4e-170 601.3 359 82.5
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.8e-170 600.9 320 89.7
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 5.8e-170 600.9 317 90.5
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 7.6e-170 600.5 317 89.3
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 9.9e-170 600.1 317 90.5
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 9.9e-170 600.1 320 89.7
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 9.9e-170 600.1 317 89.3
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.3e-169 599.7 320 89.1
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.3e-169 599.7 317 89.0
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.7e-169 599.4 317 90.2
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.7e-169 599.4 320 89.4
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.7e-169 599.4 322 87.9
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.2e-169 599.0 317 90.2
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.2e-169 599.0 320 87.8
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.2e-169 599.0 320 89.1
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 2.2e-169 599.0 317 90.2
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 2.9e-169 598.6 317 89.3
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.9e-169 598.6 317 89.3
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 3.8e-169 598.2 317 89.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 3.8e-169 598.2 317 90.2
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 4.9e-169 597.8 317 89.6
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 6.4e-169 597.4 320 87.8
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 6.4e-169 597.4 317 90.2
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 8.4e-169 597.0 320 88.4
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-168 596.3 322 86.6
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-168 596.3 322 87.0
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.4e-168 596.3 322 86.6
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.4e-168 596.3 320 88.1
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.4e-168 596.3 321 89.1
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.4e-168 596.3 321 89.1
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.9e-168 595.9 317 89.9
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.9e-168 595.9 317 89.0
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.4e-168 595.5 322 87.9
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.4e-168 595.5 322 87.3
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 4.2e-168 594.7 317 89.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 5.4e-168 594.3 322 87.0
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 5.4e-168 594.3 317 88.6
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 5.4e-168 594.3 320 88.1
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.4e-168 594.3 320 87.5
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 7.1e-168 594.0 317 89.3
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 7.1e-168 594.0 321 88.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 9.3e-168 593.6 322 87.0
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 9.3e-168 593.6 317 88.3
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.2e-167 593.2 317 88.3
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.6e-167 592.8 322 86.3
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.6e-167 592.8 320 87.5
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 2.1e-167 592.4 317 89.6
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 2.7e-167 592.0 317 87.4
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.7e-167 592.0 317 89.0
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.7e-167 592.0 336 85.7
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 3.5e-167 591.7 322 86.6
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 3.5e-167 591.7 317 89.0
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 3.5e-167 591.7 321 88.2
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 3.5e-167 591.7 317 89.3
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.5e-167 591.7 320 85.9
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 6.0e-167 590.9 320 86.9
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 7.8e-167 590.5 317 88.6
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 7.8e-167 590.5 318 89.6
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.0e-166 590.1 317 89.0
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.0e-166 590.1 320 86.9
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.3e-166 589.7 317 88.0
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.7e-166 589.3 320 88.1
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.7e-166 589.3 317 88.3
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.7e-166 589.3 317 88.3
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 3.0e-166 588.6 317 89.6
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.9e-166 588.2 322 86.3
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 3.9e-166 588.2 332 85.5
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.5e-165 586.3 316 88.6
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.5e-165 586.3 317 88.6
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.9e-165 585.9 323 86.4
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.9e-165 585.9 317 88.3
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.5e-165 585.5 363 79.9
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 3.3e-165 585.1 323 86.1
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 3.3e-165 585.1 323 86.1
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 5.6e-165 584.3 317 88.6
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 9.6e-165 583.6 320 85.3
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 9.6e-165 583.6 317 87.7
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.3e-164 583.2 319 87.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.6e-164 582.8 317 86.4
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.6e-164 581.6 317 87.4
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 4.8e-164 581.3 317 87.1
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 6.2e-164 580.9 320 84.7
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.8e-163 579.3 317 87.4
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 4.0e-163 578.2 317 86.4
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 5.3e-163 577.8 320 84.4
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 2.0e-162 575.9 347 80.4
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.6e-162 575.5 317 84.9
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.3e-161 573.2 317 84.2
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.7e-161 572.8 387 74.7
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.4e-160 569.7 320 83.1
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.6e-156 556.2 363 73.3
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 3.7e-156 555.1 431 66.8
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 9.9e-154 547.0 325 81.8
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 2.2e-153 545.8 324 80.6
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 4.9e-153 544.7 323 81.7
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.5e-149 533.1 318 83.3
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.6e-148 529.6 320 77.8
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 2.2e-145 519.2 269 91.4
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 8.4e-145 517.3 312 79.5
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 2.7e-143 512.3 269 89.6
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 4.6e-143 511.5 271 88.6
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 5.1e-142 508.1 290 82.4
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 3.2e-136 488.8 317 75.7
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 4.2e-136 488.4 298 76.2
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.2e-135 486.9 318 72.3
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 7.9e-135 484.2 317 71.9
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.8e-134 483.0 320 72.8
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.3e-132 476.9 314 72.0
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.8e-132 475.7 317 75.1
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 5.9e-130 468.0 245 91.0
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 4.2e-128 461.8 258 84.1
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 4.7e-119 431.8 238 86.1
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.2e-114 417.2 322 66.5
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.5e-112 410.2 225 86.7
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.0e-111 404.4 244 81.6
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.4e-107 393.7 314 60.5
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 7.7e-106 387.9 239 77.4
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 7.2e-96 354.8 291 59.1
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 3.6e-95 352.4 276 62.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.1e-55 220.3 326 41.4
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.8e-54 217.2 305 41.6
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.1e-51 208.0 108 89.8
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.8e-44 183.0 94 93.6
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 4.6e-34 149.4 93 75.3
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.3e-33 147.9 93 77.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 3.7e-23 113.2 61 86.9
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 8.2e-23 112.1 128 50.8
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.2e-20 104.0 58 79.3
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.7e-18 97.1 55 76.4
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 4.6e-18 96.3 54 77.8
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.1e-08 65.1 274 25.5
Aqoxy6G00238 Aquilegia oxysepala HOM05D006894 ORTHO05D008724 2.8e-07 60.5 234 24.4


User provided reference genes

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