Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 2.6e-68 261.9 133 100.0
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 9.7e-55 216.9 134 82.8
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.5e-52 209.5 135 80.7
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 5.9e-52 207.6 133 81.2
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 5.9e-52 207.6 135 81.5
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.9e-51 205.3 135 79.3
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 2.9e-51 205.3 135 79.3
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.0e-51 204.5 135 79.3
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.1e-50 203.4 136 80.1
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.1e-50 203.4 135 78.5
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.9e-50 202.6 136 77.9
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 2.5e-50 202.2 133 79.7
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 3.2e-50 201.8 135 79.3
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.2e-50 201.4 135 77.0
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.5e-50 201.1 134 79.1
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.5e-50 201.1 135 77.0
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 5.5e-50 201.1 135 77.8
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 7.2e-50 200.7 135 77.0
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.2e-49 199.9 135 79.3
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 1.6e-49 199.5 135 77.8
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.6e-49 199.5 134 78.4
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.6e-49 199.5 134 76.9
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 2.1e-49 199.1 134 77.6
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.1e-49 199.1 134 76.9
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.1e-49 199.1 134 76.9
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 2.1e-49 199.1 132 75.0
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 6.1e-49 197.6 134 78.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 6.1e-49 197.6 135 76.3
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.0e-48 196.8 134 76.9
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.4e-48 196.4 136 76.5
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.4e-48 196.4 135 77.0
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.8e-48 196.1 134 78.4
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.8e-48 196.1 135 76.3
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.8e-48 196.1 135 76.3
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.8e-48 196.1 133 75.2
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.8e-48 196.1 133 75.2
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 3.0e-48 195.3 137 76.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 3.0e-48 195.3 136 75.7
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 3.0e-48 195.3 135 77.0
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 3.0e-48 195.3 136 77.2
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 3.0e-48 195.3 137 74.5
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 3.0e-48 195.3 137 74.5
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 3.9e-48 194.9 135 77.0
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.1e-48 194.5 133 75.2
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 5.1e-48 194.5 135 77.0
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 5.1e-48 194.5 136 77.2
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 6.7e-48 194.1 135 77.0
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 6.7e-48 194.1 135 76.3
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 6.7e-48 194.1 134 76.9
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 6.7e-48 194.1 135 77.8
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 8.8e-48 193.7 133 74.4
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.5e-47 193.0 136 76.5
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 3.3e-47 191.8 136 77.2
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 3.3e-47 191.8 136 77.2
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 4.4e-47 191.4 135 75.6
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 9.7e-47 190.3 134 78.4
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.3e-46 189.9 135 73.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 1.3e-46 189.9 135 72.6
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.3e-46 189.9 132 73.5
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.3e-46 189.9 132 73.5
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.7e-46 189.5 134 75.4
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.7e-46 189.5 137 75.9
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.2e-46 189.1 133 74.4
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.2e-46 189.1 134 73.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.2e-46 189.1 132 74.2
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 2.8e-46 188.7 134 73.1
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 2.8e-46 188.7 134 78.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 3.7e-46 188.3 135 72.6
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 4.8e-46 188.0 133 76.7
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 6.3e-46 187.6 135 74.1
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 8.2e-46 187.2 135 72.6
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 1.1e-45 186.8 134 75.4
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 1.1e-45 186.8 135 71.1
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 1.4e-45 186.4 133 72.9
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 1.4e-45 186.4 134 72.4
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 1.4e-45 186.4 135 74.1
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.4e-45 186.4 135 71.9
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 2.4e-45 185.7 135 72.6
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 2.4e-45 185.7 134 74.6
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 3.1e-45 185.3 134 72.4
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 3.1e-45 185.3 135 71.9
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.1e-45 185.3 134 72.4
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 3.1e-45 185.3 135 74.1
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 4.1e-45 184.9 135 71.9
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 4.1e-45 184.9 135 71.9
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 4.1e-45 184.9 135 71.9
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.1e-45 184.9 134 70.9
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 4.1e-45 184.9 133 72.2
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 4.1e-45 184.9 136 73.5
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 5.3e-45 184.5 135 71.9
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 5.3e-45 184.5 135 71.9
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 7.0e-45 184.1 135 71.9
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 9.1e-45 183.7 135 71.1
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 9.1e-45 183.7 134 70.9
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.2e-44 183.3 136 72.8
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.2e-44 183.3 136 72.8
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.2e-44 183.3 134 73.1
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 2.0e-44 182.6 137 73.7
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.6e-44 182.2 136 72.1
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.6e-44 182.2 136 72.1
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.6e-44 182.2 136 72.1
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.6e-44 182.2 136 75.0
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 3.5e-44 181.8 135 70.4
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 3.5e-44 181.8 136 72.1
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.5e-44 181.8 134 73.1
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.9e-44 181.0 136 71.3
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 5.9e-44 181.0 136 71.3
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.0e-43 180.3 135 70.4
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.0e-43 180.3 134 73.9
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.0e-43 180.3 120 78.3
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.7e-43 179.5 136 70.6
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.7e-43 179.5 135 68.1
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.2e-43 179.1 151 66.9
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 2.2e-43 179.1 135 68.1
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 2.9e-43 178.7 131 71.8
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 5.0e-43 177.9 135 70.4
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 5.0e-43 177.9 135 70.4
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 5.0e-43 177.9 135 70.4
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 5.0e-43 177.9 135 70.4
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 5.0e-43 177.9 135 70.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 5.0e-43 177.9 135 68.9
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 6.5e-43 177.6 136 69.9
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 6.5e-43 177.6 134 70.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 8.5e-43 177.2 136 69.9
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.1e-42 176.8 136 69.1
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.5e-42 175.6 135 66.7
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 3.2e-42 175.3 136 69.9
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 3.6e-41 171.8 127 70.1
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 4.7e-41 171.4 138 64.5
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 8.0e-41 170.6 133 69.2
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.2e-40 167.9 116 74.1
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 8.8e-40 167.2 134 65.7
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.5e-39 166.4 134 66.4
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 7.4e-39 164.1 135 67.4
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 7.4e-39 164.1 114 73.7
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.7e-38 162.9 104 78.8
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.7e-38 161.8 136 64.7
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.2e-38 160.6 133 62.4
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.7e-35 152.9 116 66.4
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 5.0e-35 151.4 127 63.8
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.9e-34 149.4 135 63.7
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 4.2e-34 148.3 103 74.8
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.2e-34 147.5 135 64.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.6e-33 145.2 149 61.1
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 2.3e-32 142.5 115 62.6
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 3.0e-32 142.1 89 78.7
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 6.8e-32 141.0 154 56.5
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.7e-30 135.2 104 64.4
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-29 133.7 110 64.5
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.8e-29 132.9 116 59.5
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.1e-29 132.1 117 59.8
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 9.1e-29 130.6 116 59.5
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.6e-28 129.8 116 58.6
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.0e-28 129.4 116 59.5
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 9.4e-26 120.6 134 54.5
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 4.7e-25 118.2 84 72.6
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.0e-24 115.5 86 77.9
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.8e-22 109.0 139 41.7
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 6.3e-22 107.8 67 71.6
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 4.5e-20 101.7 78 67.9
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.7e-19 99.8 68 80.9
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.5e-18 96.7 52 84.6
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 4.7e-17 91.7 80 57.5
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 3.7e-14 82.0 73 64.4
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 9.2e-13 77.4 50 74.0


User provided reference genes

Program Settings