Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.0e-56 222.6 148 100.0
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 9.7e-56 220.3 148 99.3
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.0e-49 200.3 148 89.2
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.0e-45 186.0 148 83.1
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 3.6e-42 175.3 148 80.4
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.8e-41 172.9 148 73.0
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 7.5e-40 167.5 148 78.4
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 7.0e-38 161.0 146 78.8
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.2e-37 160.2 148 75.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.6e-37 159.8 148 73.6
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 3.5e-37 158.7 145 75.2
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 4.5e-37 158.3 143 76.9
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.8e-37 157.5 148 74.3
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.3e-36 156.8 139 78.4
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 5.0e-36 154.8 133 75.2
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 5.0e-36 154.8 132 81.1
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.1e-35 153.7 138 77.5
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.5e-35 153.3 148 74.3
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 2.5e-35 152.5 134 79.9
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 3.3e-35 152.1 148 72.3
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 5.6e-35 151.4 148 73.6
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 7.3e-35 151.0 139 75.5
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.2e-34 150.2 138 76.8
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.2e-34 150.2 131 76.3
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.6e-34 149.8 134 78.4
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 2.1e-34 149.4 139 78.4
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 2.8e-34 149.1 139 62.6
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 2.8e-34 149.1 137 74.5
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 4.7e-34 148.3 148 70.9
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 8.0e-34 147.5 135 51.9
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 8.0e-34 147.5 137 74.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.0e-33 147.1 125 84.0
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 1.4e-33 146.7 139 73.4
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.4e-33 146.7 132 78.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.4e-33 146.7 132 79.5
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.8e-33 146.4 131 77.9
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.3e-33 146.0 132 78.0
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 3.0e-33 145.6 137 70.8
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 3.0e-33 145.6 137 71.5
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 3.0e-33 145.6 138 72.5
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 5.2e-33 144.8 138 71.7
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 5.2e-33 144.8 136 64.7
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 6.8e-33 144.4 132 65.9
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 6.8e-33 144.4 138 72.5
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 8.9e-33 144.1 129 76.7
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 8.9e-33 144.1 88 75.0
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.5e-32 143.3 139 73.4
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.5e-32 143.3 133 72.2
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.0e-32 142.9 137 73.0
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 3.4e-32 142.1 133 72.2
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 3.4e-32 142.1 137 70.1
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.4e-32 142.1 136 71.3
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.4e-32 142.1 136 71.3
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 3.4e-32 142.1 135 71.1
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 3.4e-32 142.1 139 72.7
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 7.5e-32 141.0 135 69.6
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 9.8e-32 140.6 139 73.4
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.3e-31 140.2 137 66.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.3e-31 140.2 139 71.9
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.7e-31 139.8 139 71.9
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 2.9e-31 139.0 139 71.9
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 2.9e-31 139.0 140 56.4
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.7e-31 138.7 137 65.7
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 4.9e-31 138.3 138 71.0
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 2.4e-30 136.0 138 68.8
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 9.2e-30 134.0 125 77.6
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 9.2e-30 134.0 119 79.8
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.2e-29 133.7 137 65.7
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 1.2e-29 133.7 83 75.9
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.6e-29 133.3 139 71.9
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 4.6e-29 131.7 129 78.3
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 6.0e-29 131.3 121 77.7
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 1.3e-28 130.2 89 70.8
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 3.0e-28 129.0 139 72.7
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 3.9e-28 128.6 140 64.3
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.1e-27 127.1 138 66.7
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.9e-27 126.3 138 68.1
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 3.3e-27 125.6 125 48.8
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 5.6e-27 124.8 134 66.4
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 7.3e-27 124.4 80 67.5
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.2e-26 123.6 138 65.9
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 1.2e-26 123.6 138 65.9
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.2e-26 123.6 140 56.4
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.1e-26 122.9 136 64.7
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 4.7e-26 121.7 127 68.5
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 4.7e-26 121.7 142 56.3
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.4e-25 120.2 127 66.1
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 2.3e-25 119.4 135 63.0
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 2.3e-25 119.4 127 67.7
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 4.0e-25 118.6 133 63.9
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 6.8e-25 117.9 129 68.2
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 6.8e-25 117.9 113 77.0
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 1.5e-24 116.7 137 60.6
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 2.0e-24 116.3 129 63.6
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 2.0e-24 116.3 129 63.6
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 2.6e-24 115.9 127 63.8
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 2.6e-24 115.9 129 62.8
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 4.4e-24 115.2 129 62.8
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 9.8e-24 114.0 136 69.9
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 2.2e-23 112.8 129 61.2
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.1e-22 110.5 82 56.1
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 1.4e-22 110.2 114 51.8
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 2.4e-22 109.4 101 84.2
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 4.1e-22 108.6 150 56.0
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 7.0e-22 107.8 141 59.6
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 7.0e-22 107.8 141 59.6
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.7e-21 105.9 129 58.9
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 3.5e-21 105.5 140 39.3
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 1.7e-20 103.2 139 38.8
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.5e-19 100.1 128 62.5
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 4.3e-19 98.6 137 55.5
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 8.9e-17 90.9 123 53.7
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 8.9e-17 90.9 96 66.7
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.7e-15 86.7 132 43.9
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 6.4e-15 84.7 127 52.0
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 7.1e-14 81.3 156 37.2
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 7.1e-14 81.3 63 54.0
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 3.9e-12 75.5 125 50.4
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 33.9
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 34.7
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 33.9
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 33.9
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 34.7
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 5.6e-11 71.6 58 58.6
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 9.5e-11 70.9 118 33.1
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.1e-09 67.4 124 31.5
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 5.2e-09 65.1 105 31.4
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.2e-07 59.7 73 43.8
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.9e-07 59.3 66 92.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.9e-07 59.3 95 47.4
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 6.4e-07 58.2 141 40.4


User provided reference genes

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