Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0443 Trochodendron aralioides HOM05D002077 ORTHO05D000818 1.5e-115 419.5 203 100.0
Aqoxy5G01533 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.6e-29 133.7 153 47.1
Aqoxy7G02866 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.5e-27 127.1 150 46.0
Cfa000242 Carpinus fangiana HOM05D011823 ORTHO05D014382 1.0e-26 124.4 139 49.6
Aqoxy7G02867 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 2.1e-24 116.7 171 41.5
Aqoxy2G00158 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 9.7e-22 107.8 173 42.8
Atru.chr2.2914 Acer truncatum HOM05D002077 ORTHO05D000818 4.8e-21 105.5 165 38.2
Atru.chr2.2937 Acer truncatum HOM05D002077 ORTHO05D000818 1.8e-20 103.6 171 35.7
Aqoxy2G00144 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 4.1e-20 102.4 158 41.1
Rhsim13G0155700 Rhododendron simsii HOM05D011823 ORTHO05D014382 1.2e-19 100.9 171 43.3
CSS0014052 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 2.6e-19 99.8 170 32.9
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 3.8e-18 95.9 154 35.1
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 3.8e-18 95.9 158 38.0
COL.COLO4_36569 Corchorus olitorius HOM05D002077 ORTHO05D000818 5.0e-18 95.5 181 34.3
Thecc.07G038400 Theobroma cacao HOM05D002077 ORTHO05D000818 6.5e-18 95.1 156 37.8
Haze_06779 Corylus avellana HOM05D002077 ORTHO05D000818 1.1e-17 94.4 121 44.6
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 1.1e-17 94.4 153 40.5
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 1.4e-17 94.0 160 34.4
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 3.2e-17 92.8 166 36.7
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 4.2e-17 92.4 172 36.0
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 4.2e-17 92.4 172 36.0
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 4.2e-17 92.4 172 36.0
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 7.2e-17 91.7 161 37.3
CSS0029340 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D000818 1.2e-16 90.9 163 30.7
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.2e-16 90.9 172 36.6
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 1.6e-16 90.5 160 36.9
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 2.1e-16 90.1 153 36.6
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.6e-16 89.4 165 35.8
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 3.6e-16 89.4 160 34.4
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 3.6e-16 89.4 166 36.1
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 4.6e-16 89.0 151 35.8
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 6.1e-16 88.6 157 36.9
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 7.9e-16 88.2 161 34.2
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 1.0e-15 87.8 151 37.7
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.4e-15 87.4 156 34.6
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.8e-15 87.0 158 32.9
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 1.8e-15 87.0 157 35.0
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 3.0e-15 86.3 157 33.8
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 3.0e-15 86.3 153 35.3
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 3.0e-15 86.3 153 35.3
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 3.0e-15 86.3 159 34.6
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 3.0e-15 86.3 153 34.0
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 3.9e-15 85.9 157 35.7
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 3.9e-15 85.9 161 33.5
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 3.9e-15 85.9 161 33.5
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 5.1e-15 85.5 161 33.5
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 5.1e-15 85.5 159 34.0
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 5.1e-15 85.5 152 36.8
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 6.7e-15 85.1 154 33.1
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 8.8e-15 84.7 159 34.6
Hund11495 Selenicereus undatus HOM05D002077 ORTHO05D000818 8.8e-15 84.7 157 31.8
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 1.1e-14 84.3 157 33.1
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 1.5e-14 84.0 166 32.5
COL.COLO4_09460 Corchorus olitorius HOM05D036706 ORTHO05D000818 1.5e-14 84.0 145 36.6
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 1.5e-14 84.0 165 33.9
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 2.5e-14 83.2 157 34.4
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 3.3e-14 82.8 154 33.1
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 3.3e-14 82.8 160 34.4
HPP92_008435 Vanilla planifolia HOM05D002077 ORTHO05D000818 3.3e-14 82.8 154 33.8
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 4.3e-14 82.4 158 33.5
HPP92_008461 Vanilla planifolia HOM05D002077 ORTHO05D000818 4.3e-14 82.4 154 33.8
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 5.7e-14 82.0 158 32.3
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 5.7e-14 82.0 158 33.5
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 5.7e-14 82.0 155 33.5
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 7.4e-14 81.6 156 35.3
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 7.4e-14 81.6 164 30.5
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 7.4e-14 81.6 158 32.3
Manes.02G024600 Manihot esculenta HOM05D002077 ORTHO05D000818 7.4e-14 81.6 169 30.2
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 9.7e-14 81.3 156 33.3
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 9.7e-14 81.3 156 33.3
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 9.7e-14 81.3 156 33.3
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 9.7e-14 81.3 156 33.3
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 9.7e-14 81.3 159 33.3
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 9.7e-14 81.3 155 32.9
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 9.7e-14 81.3 157 33.1
COL.COLO4_16618 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.3e-13 80.9 155 32.9
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 1.3e-13 80.9 158 33.5
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 1.3e-13 80.9 157 32.5
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 1.7e-13 80.5 154 35.1
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 1.7e-13 80.5 154 33.8
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 1.7e-13 80.5 159 30.8
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 1.7e-13 80.5 155 32.3
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.7e-13 80.5 154 35.1
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 2.2e-13 80.1 156 32.7
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 2.2e-13 80.1 158 33.5
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 2.2e-13 80.1 158 31.6
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 2.8e-13 79.7 154 32.5
CSS0033824 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 2.8e-13 79.7 158 35.4
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 3.7e-13 79.3 153 33.3
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 3.7e-13 79.3 177 32.8
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 3.7e-13 79.3 157 31.2
CSS0033539 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 4.8e-13 79.0 158 35.4
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 4.8e-13 79.0 154 34.4
COL.COLO4_28668 Corchorus olitorius HOM05D002077 ORTHO05D000818 4.8e-13 79.0 124 39.5
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 4.8e-13 79.0 155 32.9
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 4.8e-13 79.0 151 33.1
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 4.8e-13 79.0 151 35.1
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 4.8e-13 79.0 158 32.3
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 6.3e-13 78.6 158 32.3
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.1e-12 77.8 158 32.9
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.1e-12 77.8 157 29.9
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 1.1e-12 77.8 151 33.1
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 1.4e-12 77.4 157 32.5
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 1.4e-12 77.4 158 31.6
Ciclev10021301m.g Citrus clementina HOM05D002077 ORTHO05D000818 1.8e-12 77.0 150 34.7
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 1.8e-12 77.0 154 31.2
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.8e-12 77.0 154 28.6
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.8e-12 77.0 171 29.8
Aqoxy4G02851 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 2.4e-12 76.6 153 31.4
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 2.4e-12 76.6 159 33.3
THA.LOC104814386 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 2.4e-12 76.6 150 29.3
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 3.1e-12 76.3 153 32.7
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 3.1e-12 76.3 153 32.7
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 4.1e-12 75.9 161 32.3
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.1e-12 75.9 158 32.9
CSS0043009 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 5.3e-12 75.5 134 32.8
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 6.9e-12 75.1 154 36.4
FAN10G2215 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.2e-11 74.3 182 29.7
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.2e-11 74.3 151 29.1
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 1.5e-11 73.9 163 32.5
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 1.5e-11 73.9 162 32.7
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.0e-11 73.6 154 29.2
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 3.4e-11 72.8 158 32.9
CARHR189810 Cardamine hirsuta HOM05D002077 ORTHO05D000818 4.5e-11 72.4 154 31.2
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 5.9e-11 72.0 156 27.6
THA.LOC104806991 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 5.9e-11 72.0 161 30.4
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.0e-10 71.2 154 28.6
FAN03G1381 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.3e-10 70.9 176 29.0
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 1.3e-10 70.9 162 31.5
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 2.2e-10 70.1 149 28.9
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 2.2e-10 70.1 166 30.1
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.8e-10 69.3 157 33.1
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 3.8e-10 69.3 157 33.1
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 3.8e-10 69.3 164 29.9
Aqoxy6G00702 Aquilegia oxysepala HOM05D010647 ORTHO05D012576 8.5e-10 68.2 165 29.1
A06p18870 Brassica napus HOM05D002077 ORTHO05D000818 8.5e-10 68.2 154 33.1
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 8.5e-10 68.2 157 32.5
arahy.Tifrunner.gnm1.ann1.DJ3X7X Arachis hypogaea HOM05D002077 ORTHO05D000818 1.4e-09 67.4 164 30.5
arahy.Tifrunner.gnm1.ann1.Z3M8QU Arachis hypogaea HOM05D002077 ORTHO05D000818 2.5e-09 66.6 164 31.7
CSS0007058 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 4.2e-09 65.9 76 44.7
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 7.2e-09 65.1 158 32.3
arahy.Tifrunner.gnm1.ann1.BD57PC Arachis hypogaea HOM05D002077 ORTHO05D000818 1.2e-08 64.3 145 31.7
arahy.Tifrunner.gnm1.ann1.BCS63D Arachis hypogaea HOM05D002077 ORTHO05D000818 1.6e-08 63.9 164 29.3
CSS0022060 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D014382 2.1e-08 63.5 90 41.1
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 2.1e-08 63.5 157 32.5
arahy.Tifrunner.gnm1.ann1.UUWI9C Arachis hypogaea HOM05D002077 ORTHO05D000818 2.7e-08 63.2 164 30.5
Medtr7g075970 Medicago truncatula HOM05D002077 ORTHO05D000818 2.7e-08 63.2 147 30.6
arahy.Tifrunner.gnm1.ann1.R7U9VL Arachis hypogaea HOM05D002077 ORTHO05D000818 4.7e-08 62.4 168 31.0
SalBow7G2830 Salvia bowleyana HOM05D000710 ORTHO05D000336 4.7e-08 62.4 191 27.2
arahy.Tifrunner.gnm1.ann1.HTS5S3 Arachis hypogaea HOM05D002077 ORTHO05D000818 6.1e-08 62.0 164 29.3
Psat3g113600 Pisum sativum HOM05D002077 ORTHO05D000818 7.9e-08 61.6 144 27.8
TPR.G14717 Trifolium pratense HOM05D002077 ORTHO05D000818 1.8e-07 60.5 157 31.8
BraA07t31041Z Brassica rapa HOM05D002077 ORTHO05D000818 2.3e-07 60.1 151 28.5
Aqoxy2G00214 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 3.0e-07 59.7 85 42.4
Aqoxy3G00237 Aquilegia oxysepala HOM05D002273 ORTHO05D000818 3.0e-07 59.7 131 31.3
Medtr7g074410 Medicago truncatula HOM05D002077 ORTHO05D000818 3.0e-07 59.7 152 27.0
Aqoxy2G04051 Aquilegia oxysepala HOM05D001705 ORTHO05D002725 3.9e-07 59.3 156 27.6
ATR0787G011 Amborella trichopoda HOM05D010175 ORTHO05D012300 5.1e-07 58.9 160 26.9
Psat3g113640 Pisum sativum HOM05D002077 ORTHO05D000818 5.1e-07 58.9 149 26.8
Phvul.008G073600 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 6.7e-07 58.5 151 28.5
Atru.chr2.2845 Acer truncatum HOM05D002077 ORTHO05D000818 8.8e-07 58.2 68 44.1
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 1.5e-06 57.4 181 28.7
FAN15G2710 Fragaria x ananassa HOM05D000710 ORTHO05D000336 2.0e-06 57.0 149 23.5
TAR624G0446 Trochodendron aralioides HOM05D010647 ORTHO05D012576 2.0e-06 57.0 161 29.2
Medtr7g074430 Medicago truncatula HOM05D002077 ORTHO05D000818 2.6e-06 56.6 146 28.8
RcHm_v2.0_Chr6g0310971 Rosa chinensis HOM05D000710 ORTHO05D000336 3.3e-06 56.2 149 24.2
Ah.09g232430 Amaranthus hybridus HOM05D000710 ORTHO05D000336 4.4e-06 55.8 158 26.6
A04p18450 Brassica napus HOM05D002077 ORTHO05D000818 4.4e-06 55.8 151 23.2
A07p34160 Brassica napus HOM05D002077 ORTHO05D000818 4.4e-06 55.8 128 31.2
ATR1149G060 Amborella trichopoda HOM05D002077 ORTHO05D000818 5.7e-06 55.5 172 29.1
Aqoxy1G03849 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 7.4e-06 55.1 179 30.7
C06p42610 Brassica napus HOM05D002077 ORTHO05D000818 7.4e-06 55.1 128 30.5
BolC6t39178H Brassica oleracea HOM05D002077 ORTHO05D000818 7.4e-06 55.1 128 30.5
Medtr1g029330 Medicago truncatula HOM05D002077 ORTHO05D000818 7.4e-06 55.1 153 28.1


User provided reference genes

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