Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0383 Trochodendron aralioides HOM05D004132 ORTHO05D018522 1.9e-144 515.8 248 100.0
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 8.5e-113 410.6 207 94.2
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 2.5e-112 409.1 207 93.7
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 9.4e-112 407.1 207 92.3
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 9.4e-112 407.1 210 91.0
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 1.6e-111 406.4 207 92.8
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 1.6e-111 406.4 207 92.8
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 3.6e-111 405.2 207 91.3
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 3.6e-111 405.2 207 91.3
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 4.7e-111 404.8 205 92.7
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 6.1e-111 404.4 210 90.5
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 6.1e-111 404.4 206 91.7
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 8.0e-111 404.1 207 91.3
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 1.0e-110 403.7 207 90.8
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 1.8e-110 402.9 207 90.8
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 1.8e-110 402.9 207 92.8
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 1.8e-110 402.9 207 92.8
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 2.3e-110 402.5 207 90.3
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 2.3e-110 402.5 207 90.8
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 3.0e-110 402.1 207 90.3
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 8.8e-110 400.6 207 89.9
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 1.2e-109 400.2 207 91.3
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 1.5e-109 399.8 207 89.9
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 2.0e-109 399.4 210 90.0
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 2.6e-109 399.1 207 91.3
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 3.3e-109 398.7 207 91.3
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 4.4e-109 398.3 207 89.9
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 5.7e-109 397.9 207 89.4
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 7.5e-109 397.5 207 89.9
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 7.5e-109 397.5 207 89.4
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 1.3e-108 396.7 210 87.6
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 1.3e-108 396.7 207 89.4
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 1.7e-108 396.4 207 91.3
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 1.7e-108 396.4 207 89.9
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 2.2e-108 396.0 207 91.3
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 2.8e-108 395.6 207 88.4
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 2.8e-108 395.6 207 89.4
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 3.7e-108 395.2 210 89.0
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 4.8e-108 394.8 207 90.3
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 4.8e-108 394.8 207 91.3
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 6.3e-108 394.4 207 88.9
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 6.3e-108 394.4 210 89.0
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 8.2e-108 394.0 207 89.9
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 1.4e-107 393.3 207 90.8
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 1.4e-107 393.3 207 89.4
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 1.4e-107 393.3 207 89.4
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 4.1e-107 391.7 207 87.9
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 4.1e-107 391.7 207 87.9
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 7.0e-107 391.0 207 87.9
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 7.0e-107 391.0 207 86.5
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 9.1e-107 390.6 207 87.4
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 1.2e-106 390.2 207 87.9
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 1.2e-106 390.2 208 89.4
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 2.0e-106 389.4 207 87.4
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 2.0e-106 389.4 212 85.4
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 2.0e-106 389.4 212 84.9
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 2.0e-106 389.4 207 87.0
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 2.7e-106 389.0 207 87.9
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 4.5e-106 388.3 212 84.0
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 4.5e-106 388.3 207 88.4
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 5.9e-106 387.9 210 86.7
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 7.7e-106 387.5 213 86.4
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 1.0e-105 387.1 207 89.4
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.0e-105 387.1 212 84.4
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 1.0e-105 387.1 207 87.0
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 1.0e-105 387.1 207 87.9
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 1.7e-105 386.3 212 84.0
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 2.2e-105 386.0 207 86.5
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 2.9e-105 385.6 239 78.7
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 6.5e-105 384.4 212 84.4
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 8.5e-105 384.0 207 87.0
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 1.5e-104 383.3 208 88.9
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 2.5e-104 382.5 207 85.5
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 3.2e-104 382.1 207 86.5
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 5.5e-104 381.3 210 86.2
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 5.5e-104 381.3 207 87.4
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 7.2e-104 380.9 207 86.5
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 9.4e-104 380.6 234 79.1
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 1.2e-103 380.2 207 87.0
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 1.2e-103 380.2 208 87.0
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.6e-103 379.8 207 86.0
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 2.1e-103 379.4 207 86.5
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 3.6e-103 378.6 208 87.0
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 1.8e-102 376.3 207 85.0
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 1.8e-102 376.3 213 83.6
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 1.8e-102 376.3 190 91.6
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 1.8e-102 376.3 207 84.5
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 3.0e-102 375.6 207 85.0
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 1.2e-101 373.6 208 85.6
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 2.0e-101 372.9 235 75.7
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 2.6e-101 372.5 190 91.6
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 4.4e-101 371.7 190 90.5
Oeu018076.1 Olea europaea HOM05D004132 ORTHO05D006273 4.4e-101 371.7 191 89.0
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 1.3e-100 370.2 212 81.6
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 1.3e-100 370.2 212 81.6
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 2.2e-100 369.4 190 90.0
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 2.2e-100 369.4 207 84.1
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 2.8e-100 369.0 210 82.9
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 3.7e-100 368.6 210 82.4
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 3.7e-100 368.6 210 82.4
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 3.7e-100 368.6 210 82.4
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 3.7e-100 368.6 195 87.2
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 6.3e-100 367.9 210 81.9
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 6.3e-100 367.9 210 82.9
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 1.1e-99 367.1 190 88.4
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 1.4e-99 366.7 210 81.9
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 1.8e-99 366.3 210 81.9
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 1.8e-99 366.3 210 81.9
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 1.8e-99 366.3 210 81.9
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 1.8e-99 366.3 210 81.9
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 1.8e-99 366.3 210 81.9
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 1.8e-99 366.3 210 81.9
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 3.1e-99 365.5 210 81.9
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 4.5e-98 361.7 196 85.2
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 5.9e-98 361.3 207 82.1
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 2.3e-97 359.4 211 80.6
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 7.2e-96 354.4 189 87.8
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 1.6e-95 353.2 206 81.1
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 1.0e-94 350.5 208 80.3
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 2.3e-94 349.4 206 77.7
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 1.3e-89 333.6 376 50.8
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 8.0e-87 324.3 208 75.0
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 5.4e-83 311.6 209 71.8
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 1.7e-81 306.6 207 69.6
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 5.0e-81 305.1 217 70.5
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 3.3e-80 302.4 151 91.4
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 1.6e-74 283.5 209 65.6
GSVIVG01020308001 Vitis vinifera HOM05D004132 ORTHO05D018522 9.9e-61 237.7 127 89.8
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 1.2e-55 220.7 203 52.2
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 3.9e-49 199.1 212 46.2
HanXRQChr09g0260401 Helianthus annuus HOM05D004132 ORTHO05D018522 8.7e-49 198.0 106 85.8
SEGI_34381 Sequoiadendron giganteum HOM05D004132 ORTHO05D018522 1.8e-46 190.3 106 84.0
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 7.6e-45 184.9 95 89.5
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 9.9e-45 184.5 102 82.4
ECA233G2583 Erigeron canadensis HOM05D004132 ORTHO05D006273 1.7e-44 183.7 97 85.6
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 1.8e-33 147.1 74 89.2
QL04p095610 Quercus lobata HOM05D004132 ORTHO05D018522 1.3e-25 120.9 165 44.8
AL4G21280 Arabidopsis lyrata HOM05D004132 ORTHO05D000124 2.0e-21 107.1 107 50.5
arahy.Tifrunner.gnm1.ann1.0UIU5S Arachis hypogaea HOM05D004132 ORTHO05D018522 1.3e-20 104.4 54 83.3
HanXRQChr16g0516741 Helianthus annuus HOM05D004132 ORTHO05D018522 3.8e-20 102.8 57 84.2
BcaC09g51753 Brassica carinata HOM05D004132 ORTHO05D000912 7.2e-19 98.6 69 69.6
TPR.G19642 Trifolium pratense HOM05D004132 ORTHO05D018522 9.4e-19 98.2 56 89.3
RcHm_v2.0_Chr3g0486391 Rosa chinensis HOM05D004132 ORTHO05D006273 2.0e-16 90.5 45 91.1
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.1e-14 84.7 42 88.1
GSVIVG01020310001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.4e-14 83.6 75 58.7
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 1.5e-13 80.9 42 88.1
arahy.Tifrunner.gnm1.ann1.DI7635 Arachis hypogaea HOM05D004132 ORTHO05D006273 7.9e-10 68.6 35 74.3
arahy.Tifrunner.gnm1.ann1.S74BYY Arachis hypogaea HOM05D004132 ORTHO05D006273 1.1e-08 64.7 35 74.3
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 1.3e-07 61.2 112 36.6
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 1.1e-06 58.2 77 40.3
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 1.8e-06 57.4 89 38.2
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 1.8e-06 57.4 89 38.2
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 7.0e-06 55.5 77 39.0
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 9.1e-06 55.1 92 37.0


User provided reference genes

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