Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.8e-241 838.2 415 100.0
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.9e-194 682.6 367 89.6
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.2e-151 540.4 415 64.1
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.6e-108 397.1 403 48.6
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.1e-107 394.4 403 47.4
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 5.2e-107 392.1 401 47.6
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.2e-106 391.0 409 46.7
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.5e-106 390.6 409 46.7
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.5e-106 390.6 409 48.9
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 3.4e-106 389.4 403 48.1
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.4e-106 389.4 402 48.0
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.3e-105 387.5 401 47.6
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 1.7e-105 387.1 406 47.0
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.7e-105 387.1 401 47.9
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 2.2e-105 386.7 407 47.4
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 2.9e-105 386.3 401 47.4
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 1.4e-104 384.0 408 46.6
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.4e-104 384.0 396 48.0
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.4e-104 384.0 396 48.0
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 3.2e-104 382.9 404 48.3
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 4.6e-103 379.0 408 46.8
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 6.0e-103 378.6 409 46.0
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.0e-102 377.9 400 46.5
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.3e-102 376.7 405 46.9
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 5.1e-102 375.6 410 47.1
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 6.6e-102 375.2 407 46.2
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 1.5e-101 374.0 390 47.9
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 4.3e-101 372.5 406 45.8
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 5.6e-101 372.1 404 46.5
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.8e-99 367.1 410 44.9
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 1.2e-98 364.4 404 44.3
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 5.8e-98 362.1 404 44.8
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 1.7e-97 360.5 407 45.5
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 2.9e-97 359.8 407 45.2
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 6.4e-97 358.6 400 45.5
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.1e-96 357.8 410 44.9
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 1.4e-96 357.5 399 44.9
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 1.4e-96 357.5 404 45.0
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 5.4e-96 355.5 402 44.0
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 5.4e-96 355.5 392 44.9
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.2e-95 354.4 409 45.2
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 2.7e-95 353.2 405 43.0
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 3.5e-95 352.8 399 44.4
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 6.0e-95 352.1 404 44.1
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 1.0e-94 351.3 391 45.0
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 1.0e-94 351.3 400 44.5
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.3e-94 350.9 366 45.9
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.3e-94 350.9 400 44.5
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.3e-94 350.9 394 44.4
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 3.0e-94 349.7 400 45.0
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 5.1e-94 349.0 406 43.1
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 8.7e-94 348.2 407 45.5
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.9e-93 347.1 402 44.0
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 5.6e-93 345.5 381 45.7
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 1.6e-92 344.0 395 43.8
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 4.8e-92 342.4 366 46.4
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 6.2e-92 342.0 405 43.2
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 6.2e-92 342.0 405 43.2
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 2.9e-89 333.2 408 41.4
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 6.4e-89 332.0 370 44.9
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 6.4e-89 332.0 405 41.5
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 8.4e-89 331.6 405 41.5
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.1e-88 331.3 404 41.8
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.4e-88 330.9 404 43.1
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 3.2e-88 329.7 394 42.1
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.5e-88 328.9 396 45.7
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.2e-87 327.8 401 44.4
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.6e-87 325.9 365 45.5
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 7.9e-87 325.1 410 41.7
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.9e-87 325.1 405 42.7
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.0e-86 324.7 397 43.1
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.3e-86 323.6 399 43.6
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.3e-86 323.6 399 43.6
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 2.3e-86 323.6 359 44.6
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 2.3e-86 323.6 404 40.6
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 5.1e-86 322.4 406 42.4
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 8.7e-86 321.6 381 42.0
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 3.3e-85 319.7 408 39.2
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 4.3e-85 319.3 389 42.4
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.4e-85 318.5 400 42.5
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.6e-84 317.4 400 41.8
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 1.6e-84 317.4 391 43.0
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 3.7e-84 316.2 388 43.0
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 3.7e-84 316.2 400 42.2
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.2e-84 315.5 375 42.9
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-83 314.7 391 43.0
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 1.8e-83 313.9 389 40.6
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.2e-82 311.2 389 42.9
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.5e-82 310.8 398 42.2
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.0e-82 310.5 411 39.9
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 4.5e-82 309.3 408 40.0
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 7.6e-82 308.5 392 43.4
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 2.9e-81 306.6 369 43.6
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.5e-81 305.4 411 39.9
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.1e-80 304.7 336 44.9
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 3.2e-80 303.1 378 43.7
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 4.2e-80 302.8 418 40.9
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 1.6e-79 300.8 412 39.6
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.8e-78 297.4 418 40.4
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 1.8e-78 297.4 410 41.5
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 3.9e-78 296.2 349 45.0
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 6.7e-78 295.4 392 40.3
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.1e-77 294.7 392 40.3
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.9e-77 293.9 385 43.4
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 2.5e-77 293.5 387 40.6
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.3e-77 293.1 385 43.1
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 5.7e-77 292.4 372 41.4
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 7.4e-77 292.0 383 42.8
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 9.6e-77 291.6 391 39.9
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 6.3e-76 288.9 379 40.9
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 2.4e-75 287.0 387 43.2
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 4.1e-75 286.2 357 42.0
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 9.0e-75 285.0 394 39.1
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 9.0e-75 285.0 388 40.2
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 2.6e-74 283.5 388 39.9
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 3.4e-74 283.1 379 41.2
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 3.4e-74 283.1 371 40.7
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 5.9e-74 282.3 413 39.7
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 5.9e-74 282.3 388 39.7
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 5.9e-74 282.3 388 39.7
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 7.6e-74 282.0 413 39.7
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 7.6e-74 282.0 391 41.4
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.9e-73 280.0 411 39.2
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 8.5e-73 278.5 375 40.0
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 9.3e-72 275.0 398 36.4
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 1.2e-71 274.6 414 37.9
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.6e-71 272.7 394 40.9
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.8e-70 270.8 307 45.0
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.1e-69 268.1 397 38.0
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.5e-69 267.7 417 35.7
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 4.1e-67 259.6 376 38.0
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 3.4e-66 256.5 393 37.7
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.9e-66 255.8 402 37.3
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 5.0e-65 252.7 388 35.6
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.1e-64 251.5 337 41.2
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 1.2e-63 248.1 392 34.9
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 6.1e-63 245.7 373 36.2
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.8e-62 244.2 370 37.8
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 1.8e-62 244.2 307 39.7
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 9.7e-61 238.4 379 36.7
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.4e-59 233.8 380 35.8
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 5.0e-57 226.1 409 31.1
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 5.5e-56 222.6 409 34.2
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 7.2e-56 222.2 384 32.8
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 2.0e-53 214.2 382 34.0
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 2.0e-53 214.2 293 41.6
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 5.7e-53 212.6 373 36.2
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 7.7e-50 202.2 281 40.9
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 9.4e-48 195.3 398 32.2
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 8.8e-46 188.7 291 36.1
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 1.3e-44 184.9 289 36.7
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.6e-39 167.9 227 39.6
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.3e-38 164.1 300 33.7
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.4e-35 154.8 231 36.8
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.5e-34 150.2 171 45.6
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 5.9e-34 149.4 179 43.0
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 1.2e-31 141.7 170 42.4
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 1.2e-29 135.2 132 48.5
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 3.4e-29 133.7 356 27.8
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.3e-28 131.7 310 29.0
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 1.7e-28 131.3 181 38.7
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.7e-28 131.3 129 46.5
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 7.8e-26 122.5 124 46.0
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.9e-24 117.9 94 56.4
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 5.6e-24 116.3 114 43.9
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.5e-21 108.2 175 38.3
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 3.0e-17 94.0 348 25.0
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 3.3e-16 90.5 154 35.1
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.4e-14 85.1 74 51.4
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 2.2e-12 77.8 57 59.6
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 3.7e-12 77.0 107 37.4


User provided reference genes

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