Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 6.7e-57 224.2 148 100.0
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 7.5e-56 220.7 148 99.3
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.0e-49 198.4 148 88.5
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.7e-45 185.7 148 83.1
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 4.7e-42 174.9 148 80.4
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.0e-41 172.2 148 73.0
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 9.8e-40 167.2 148 78.4
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.2e-37 160.2 137 81.0
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.0e-37 159.5 139 77.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.7e-37 159.1 148 73.6
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 4.5e-37 158.3 143 76.9
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 5.9e-37 157.9 136 77.9
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.3e-36 156.8 139 78.4
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.3e-36 156.8 139 76.3
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 5.0e-36 154.8 133 75.2
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 5.0e-36 154.8 132 81.1
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 8.6e-36 154.1 138 77.5
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 2.5e-35 152.5 134 79.9
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.3e-35 152.1 148 73.6
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 4.3e-35 151.8 148 72.3
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 5.6e-35 151.4 141 62.4
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 5.6e-35 151.4 139 75.5
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.2e-34 150.2 138 76.8
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.2e-34 150.2 148 73.0
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.2e-34 150.2 131 76.3
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 1.6e-34 149.8 139 78.4
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.6e-34 149.8 134 78.4
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 2.8e-34 149.1 137 74.5
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 8.0e-34 147.5 137 74.5
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 1.0e-33 147.1 137 73.7
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 1.4e-33 146.7 139 73.4
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 1.4e-33 146.7 133 51.9
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.4e-33 146.7 132 78.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.4e-33 146.7 132 79.5
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.8e-33 146.4 131 77.9
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.3e-33 146.0 122 85.2
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.3e-33 146.0 132 78.0
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 2.3e-33 146.0 138 72.5
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 3.0e-33 145.6 137 70.8
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 3.0e-33 145.6 137 71.5
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 4.0e-33 145.2 138 71.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 6.8e-33 144.4 129 76.7
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 8.9e-33 144.1 88 75.0
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 1.2e-32 143.7 138 72.5
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 1.2e-32 143.7 132 65.9
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.5e-32 143.3 139 73.4
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 1.5e-32 143.3 133 72.2
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 2.0e-32 142.9 137 73.0
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 2.6e-32 142.5 132 65.2
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 2.6e-32 142.5 133 72.2
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.6e-32 142.5 136 71.3
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.6e-32 142.5 136 71.3
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 2.6e-32 142.5 139 72.7
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 3.4e-32 142.1 137 70.1
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 3.4e-32 142.1 135 71.1
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 7.5e-32 141.0 135 69.6
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 7.5e-32 141.0 139 73.4
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 9.8e-32 140.6 139 71.9
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.3e-31 140.2 137 66.4
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.3e-31 140.2 139 71.9
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 2.2e-31 139.4 139 71.9
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 2.2e-31 139.4 140 56.4
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 3.7e-31 138.7 138 71.0
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.7e-31 138.7 137 65.7
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.9e-30 136.3 138 68.8
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 7.0e-30 134.4 125 77.6
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 9.2e-30 134.0 119 79.8
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.2e-29 133.7 137 65.7
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 1.2e-29 133.7 83 75.9
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.6e-29 133.3 139 71.9
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 3.5e-29 132.1 129 78.3
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 6.0e-29 131.3 121 77.7
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 1.3e-28 130.2 89 70.8
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 3.0e-28 129.0 132 67.4
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 3.0e-28 129.0 139 72.7
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 8.6e-28 127.5 138 66.7
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.5e-27 126.7 138 68.1
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 3.3e-27 125.6 136 46.3
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 4.3e-27 125.2 134 66.4
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 7.3e-27 124.4 80 67.5
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 9.5e-27 124.0 138 65.9
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 9.5e-27 124.0 138 65.9
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.1e-26 122.9 136 64.7
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 2.1e-26 122.9 131 59.5
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 4.7e-26 121.7 127 68.5
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 8.0e-26 120.9 142 56.3
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.4e-25 120.2 127 66.1
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 2.3e-25 119.4 127 67.7
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 5.2e-25 118.2 129 68.2
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 5.2e-25 118.2 119 67.2
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 6.8e-25 117.9 113 77.0
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 8.9e-25 117.5 135 62.2
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 1.5e-24 116.7 137 60.6
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.5e-24 116.7 129 63.6
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.5e-24 116.7 129 63.6
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 2.0e-24 116.3 127 63.8
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 2.0e-24 116.3 129 62.8
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 3.4e-24 115.5 129 62.8
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 9.8e-24 114.0 136 69.9
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.7e-23 113.2 129 61.2
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.1e-22 110.5 82 56.1
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 2.4e-22 109.4 101 84.2
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 4.1e-22 108.6 110 52.7
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 5.4e-22 108.2 140 58.6
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.2e-21 107.1 141 60.3
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 1.2e-21 107.1 141 60.3
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 2.1e-21 106.3 129 58.9
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 7.8e-21 104.4 138 39.1
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 3.0e-20 102.4 134 39.6
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 3.0e-20 102.4 128 62.5
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 4.3e-19 98.6 137 55.5
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 8.9e-17 90.9 96 66.7
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.5e-16 90.1 118 55.1
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.3e-15 87.0 132 43.9
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 6.4e-15 84.7 127 52.0
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 5.4e-14 81.6 93 48.4
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 7.1e-14 81.3 63 54.0
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 3.0e-12 75.9 125 50.4
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 33.9
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 34.7
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 33.9
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 33.9
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.5e-11 73.6 118 34.7
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 5.6e-11 71.6 58 58.6
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 9.5e-11 70.9 118 33.1
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.4e-09 67.0 119 31.1
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 5.2e-09 65.1 105 31.4
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.2e-07 59.7 73 43.8
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.9e-07 59.3 66 92.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.9e-07 59.3 95 47.4
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 8.4e-07 57.8 138 40.6


User provided reference genes

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