Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1975.3 989 100.0
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1786.9 989 88.8
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1780.0 990 88.8
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1778.1 989 88.6
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1778.1 989 89.0
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1768.4 986 88.3
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1768.4 989 88.3
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1765.0 989 88.2
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1761.1 989 87.0
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1760.0 989 87.4
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1759.2 989 87.5
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1758.8 983 88.2
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1756.5 998 86.6
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1755.3 989 87.4
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1749.6 989 86.9
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1747.6 989 86.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1746.9 989 86.5
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1738.8 984 87.1
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1738.4 989 86.1
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1737.6 991 87.2
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1734.9 989 86.7
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1733.8 989 86.0
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1733.4 990 86.4
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1729.5 997 85.7
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1725.3 991 86.6
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1723.4 990 86.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1722.6 989 85.9
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1721.8 989 86.1
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1721.1 989 85.7
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1718.0 990 85.9
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1713.0 990 84.5
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1710.7 990 85.4
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1705.3 1084 79.2
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1704.1 989 84.6
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1703.3 989 84.6
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1703.0 1013 83.5
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1703.0 1013 83.5
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1701.0 989 84.0
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1699.9 1029 82.2
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1698.3 1015 83.1
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1696.8 996 84.0
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1693.3 987 84.2
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1693.3 942 89.3
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1684.8 1013 82.6
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1682.2 992 83.9
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1681.4 990 83.4
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1679.8 995 83.0
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1679.5 989 83.4
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1678.3 987 83.0
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1675.2 986 83.1
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1671.8 989 83.1
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1669.4 990 82.3
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1669.1 990 82.1
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1666.7 1005 82.0
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1664.4 991 81.9
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1663.3 1077 78.0
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 992 81.7
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 986 82.6
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1659.4 986 81.6
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1656.7 991 81.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1656.3 990 81.7
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1655.2 989 84.0
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1652.5 989 82.3
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1651.0 990 81.4
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1649.8 1002 80.4
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1649.8 989 82.8
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 992 81.0
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 989 82.7
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1640.6 990 80.7
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1637.5 993 81.1
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1637.1 998 81.7
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1636.3 1005 79.5
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1636.3 990 82.6
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1634.8 995 80.5
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1625.9 1005 79.3
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1624.8 986 81.0
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 1028 80.1
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 932 84.9
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1618.2 1007 78.8
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1614.7 989 79.6
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1610.1 989 80.1
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1598.6 986 79.9
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1595.9 989 79.6
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1590.9 995 77.7
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1588.5 1017 78.3
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1585.1 1040 75.9
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1565.1 989 79.8
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1559.3 929 84.2
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1525.8 989 77.0
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1502.3 896 82.5
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1494.2 994 74.7
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1480.7 995 74.4
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1469.9 848 84.7
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1458.4 817 88.5
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1396.7 788 87.6
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1393.6 785 87.3
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1389.0 794 87.5
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1388.6 945 74.4
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1373.2 995 72.2
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1369.8 772 88.0
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1362.8 856 79.8
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1341.6 762 86.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1319.3 792 82.3
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1300.8 763 84.4
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1225.7 999 62.1
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1216.4 782 78.9
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1215.7 990 61.5
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1203.0 762 80.2
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 1.1e-307 1060.1 977 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 8.7e-302 1040.4 790 64.6
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.5e-301 1039.6 643 81.3
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 5.0e-297 1024.6 559 91.1
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.2e-295 1020.0 611 82.7
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 3.6e-295 1018.5 665 77.3
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.0e-258 896.3 574 78.4
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 4.0e-254 882.1 611 70.5
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.1e-251 874.0 519 82.5
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 4.6e-250 868.6 517 83.9
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.6e-205 719.9 417 81.8
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 3.0e-177 626.7 336 90.8
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.5e-160 568.9 337 82.8
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.5e-147 525.4 282 90.1
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 9.5e-131 472.2 1081 31.3
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 4.9e-119 433.3 249 85.5
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.4e-110 404.4 1038 29.6
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 9.2e-110 402.5 230 80.4
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 4.3e-107 393.7 231 81.0
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.4e-105 387.9 1271 27.2
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 6.0e-101 373.2 268 73.1
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 8.1e-98 362.8 204 84.8
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 2.2e-95 354.8 207 80.2
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 1.2e-93 349.0 231 74.5
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 9.3e-86 322.8 178 87.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 5.7e-83 313.5 198 76.8
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 4.0e-81 307.4 302 54.3
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-78 298.5 212 68.9
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 4.2e-78 297.4 441 41.5
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 2.5e-70 271.6 153 81.7
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 2.6e-59 235.0 153 71.9
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.5e-56 225.7 127 79.5
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 5.2e-52 210.7 136 73.5
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 1.6e-45 189.1 121 76.0
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.3e-42 179.5 163 59.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.7e-40 171.8 134 65.7
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.7e-40 170.2 103 80.6
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 3.8e-39 167.9 174 59.2
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 6.1e-37 160.6 94 81.9
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.6e-35 155.2 88 83.0
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.5e-30 137.5 73 94.5
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.1e-29 135.6 81 77.8
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 4.0e-28 131.3 100 63.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.6e-27 128.6 131 58.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 4.4e-27 127.9 127 59.1
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 7.5e-27 127.1 75 82.7
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 8.3e-26 123.6 92 69.6
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-25 122.9 91 70.3
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 4.1e-25 121.3 75 77.3
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 7.3e-22 110.5 80 78.8
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.5e-19 102.8 87 57.5
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-17 96.3 117 44.4
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 1.0e-15 90.1 51 80.4
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.7e-15 89.4 54 75.9
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 1.5e-14 86.3 103 46.6
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.3e-14 85.1 82 52.4
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 9.5e-14 83.6 180 33.9
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 1.1e-12 80.1 229 24.5
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 7.8e-08 63.9 50 64.0
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 1.3e-07 63.2 47 70.2
Actinidia13759 Actinidia chinensis HOM05D002694 ORTHO05D002927 7.3e-06 57.4 33 75.8


User provided reference genes

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