Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 7.8e-155 550.4 280 100.0
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.9e-113 412.9 284 75.4
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.5e-110 403.3 271 74.9
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 1.1e-108 397.1 266 73.3
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.5e-107 392.1 275 68.4
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 6.0e-107 391.3 266 72.6
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 5.7e-105 384.8 286 67.5
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 9.6e-105 384.0 279 68.5
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.6e-104 383.3 285 68.8
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.4e-103 380.2 260 70.4
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 3.1e-103 379.0 289 65.1
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.4e-102 375.6 284 66.2
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.9e-101 372.5 284 66.5
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 7.1e-100 367.9 292 64.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.8e-98 363.2 298 62.4
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-98 363.2 287 63.4
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.0e-98 362.5 276 65.6
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 8.7e-98 360.9 277 63.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.1e-97 360.5 297 61.3
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.5e-97 360.1 282 62.1
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.5e-97 360.1 292 63.0
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.9e-97 359.8 280 64.3
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.5e-97 359.4 264 67.8
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.6e-96 356.7 292 62.0
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 2.2e-96 356.3 282 62.4
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.8e-96 355.9 289 62.3
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 8.2e-96 354.4 279 63.4
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.1e-95 354.0 282 60.6
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.4e-95 353.6 310 58.7
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 6.9e-95 351.3 283 61.5
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.0e-94 349.7 273 63.7
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.4e-94 349.0 293 59.4
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 4.5e-94 348.6 255 69.8
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 7.7e-94 347.8 276 62.3
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.0e-93 347.4 250 67.2
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.0e-93 347.4 251 66.9
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.3e-93 347.1 264 64.8
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.7e-93 346.7 282 60.3
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.2e-93 346.3 273 63.0
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 6.5e-93 344.7 292 59.6
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.1e-92 344.0 262 64.1
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.9e-92 343.2 278 62.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.2e-92 342.4 270 63.3
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 4.2e-92 342.0 283 60.1
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 7.2e-92 341.3 276 61.2
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 9.4e-92 340.9 260 61.5
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 9.4e-92 340.9 275 60.4
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 4.6e-91 338.6 271 61.3
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 6.1e-91 338.2 286 61.2
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 6.1e-91 338.2 275 60.0
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.0e-90 337.4 290 58.3
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.0e-90 337.4 265 63.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.4e-90 337.0 303 57.4
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.8e-90 336.7 278 60.4
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 2.3e-90 336.3 271 61.3
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.5e-89 333.6 272 61.8
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 3.3e-89 332.4 284 60.9
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.3e-89 332.4 407 46.4
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.3e-88 330.5 266 64.3
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 8.2e-88 327.8 270 60.7
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-87 327.0 305 56.7
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.4e-87 326.2 264 64.8
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.4e-87 326.2 293 58.0
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.7e-85 320.1 261 60.9
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.9e-85 319.3 269 56.1
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 5.5e-84 315.1 244 63.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 7.2e-84 314.7 279 57.7
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 4.7e-83 312.0 293 56.3
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 4.7e-83 312.0 273 54.6
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.9e-83 311.2 253 60.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.0e-82 310.8 341 50.1
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.4e-82 310.5 253 60.1
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.8e-82 310.1 264 59.8
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.8e-82 307.8 247 61.5
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 7.4e-81 304.7 291 56.0
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.3e-80 303.9 250 62.0
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 7.0e-79 298.1 280 52.9
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 9.1e-79 297.7 280 53.9
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.2e-78 297.4 255 58.0
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.5e-78 295.8 280 51.4
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.9e-77 292.7 254 57.1
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 6.5e-77 291.6 280 50.4
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.1e-76 290.8 281 52.3
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.1e-76 290.8 244 57.4
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.1e-76 290.8 254 56.7
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 3.2e-76 289.3 279 52.3
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 9.4e-76 287.7 285 50.9
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.6e-75 287.0 283 51.6
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.6e-75 287.0 181 75.7
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.6e-75 287.0 344 45.1
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 2.1e-75 286.6 285 51.2
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.6e-75 285.8 299 48.5
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 8.0e-75 284.6 288 50.0
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.4e-74 283.9 284 51.8
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.8e-74 283.5 285 50.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.9e-74 282.3 272 51.1
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 3.9e-74 282.3 277 51.3
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.7e-73 278.5 288 51.4
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 9.7e-73 277.7 287 51.6
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 3.7e-72 275.8 253 50.2
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.8e-72 275.4 287 51.2
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.4e-71 273.9 287 51.2
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.4e-71 273.9 261 48.7
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.4e-71 273.9 261 48.7
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 5.3e-71 271.9 265 53.6
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.0e-71 271.6 287 51.2
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.2e-67 260.8 239 57.3
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 4.7e-67 258.8 174 72.4
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.5e-65 253.8 277 48.4
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 4.8e-64 248.8 209 62.2
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 8.3e-64 248.1 174 70.7
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 2.4e-63 246.5 282 44.3
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 5.4e-63 245.4 281 46.6
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.4e-63 245.4 279 48.0
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.0e-62 243.4 209 58.9
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.5e-62 242.3 216 58.3
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.8e-58 230.3 281 48.0
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.6e-51 206.1 168 61.3
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.3e-50 203.4 140 68.6
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 6.8e-50 201.8 276 43.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 8.3e-48 194.9 183 55.2
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 3.5e-46 189.5 279 40.9
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.3e-45 187.6 247 44.5
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 2.5e-44 183.3 186 51.6
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.6e-43 180.6 199 49.7
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.7e-43 179.1 181 53.6
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.2e-40 170.2 171 52.6
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 8.3e-40 168.3 328 33.8
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.2e-39 166.4 124 63.7
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.4e-39 165.6 450 31.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.6e-38 164.1 277 37.5
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 3.5e-38 162.9 103 70.9
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 6.6e-37 158.7 127 58.3
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.5e-36 157.5 178 50.6
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 4.3e-36 156.0 195 47.2
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.5e-36 154.8 236 41.5
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 9.8e-33 144.8 265 35.1
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 4.6e-30 136.0 107 68.2
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.3e-29 133.7 86 77.9
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.5e-28 131.0 167 41.9
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.9e-28 130.6 212 35.4
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.2e-26 122.5 254 35.8
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 8.9e-26 121.7 236 31.8
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 1.0e-21 108.2 145 42.1
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.3e-21 107.1 65 81.5
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 4.7e-19 99.4 145 39.3
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 4.7e-19 99.4 145 39.3
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 3.1e-18 96.7 108 46.3
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.1e-18 96.7 66 66.7
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.0e-17 94.0 61 78.7
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 7.6e-17 92.0 201 32.8
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.4e-15 87.8 61 67.2
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 4.2e-15 86.3 118 41.5
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 2.3e-13 80.5 132 34.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.0e-13 80.1 252 27.4
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.5e-12 77.8 101 38.6
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 1.5e-09 67.8 39 76.9
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 4.4e-09 66.2 70 50.0
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 4.9e-08 62.8 88 36.4
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 4.2e-07 59.7 134 32.8
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 2.7e-06 57.0 49 57.1


User provided reference genes

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