Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1911 Trochodendron aralioides HOM05D004176 ORTHO05D004845 6.2e-117 424.1 207 100.0
TAR624G0327 Trochodendron aralioides HOM05D004176 ORTHO05D004845 2.0e-75 286.2 355 48.2
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 9.1e-60 234.2 157 72.6
Nn1g03915 Nelumbo nucifera HOM05D004176 ORTHO05D004845 3.5e-59 232.3 157 73.9
GSVIVG01003211001 Vitis vinifera HOM05D004176 ORTHO05D004845 1.7e-58 229.9 157 72.0
Aqoxy1G02747 Aquilegia oxysepala HOM05D004176 ORTHO05D004845 5.0e-58 228.4 157 70.1
Dinv39813 Davidia involucrata HOM05D004176 ORTHO05D004845 2.1e-56 223.0 153 70.6
Dinv40500 Davidia involucrata HOM05D004176 ORTHO05D004845 4.7e-56 221.9 153 69.9
Actinidia05580 Actinidia chinensis HOM05D004176 ORTHO05D004845 1.5e-54 216.9 151 72.8
QL05p081898 Quercus lobata HOM05D004176 ORTHO05D004845 2.0e-54 216.5 157 65.6
QL03p053022 Quercus lobata HOM05D004176 ORTHO05D004845 3.4e-54 215.7 157 65.6
Psat1g208320 Pisum sativum HOM05D004176 ORTHO05D004845 1.7e-53 213.4 159 66.0
Sabra11G0030100 Salix brachista HOM05D004176 ORTHO05D004845 2.2e-53 213.0 157 65.6
PSO675G5031 Papaver somniferum HOM05D004176 ORTHO05D004845 3.7e-53 212.2 157 66.9
Potri.011G043500 Populus trichocarpa HOM05D004176 ORTHO05D004845 3.7e-53 212.2 157 65.6
Prupe.4G036200 Prunus persica HOM05D004176 ORTHO05D004845 3.7e-53 212.2 159 64.2
COL.COLO4_31573 Corchorus olitorius HOM05D004176 ORTHO05D004845 4.8e-53 211.8 156 66.0
Duzib235G1328 Durio zibethinus HOM05D004176 ORTHO05D004845 6.3e-53 211.5 156 67.3
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 1.4e-52 210.3 159 65.4
CANSAT56G2709 Cannabis sativa HOM05D004176 ORTHO05D004845 2.4e-52 209.5 153 66.7
MBI18_g07595_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D004845 3.1e-52 209.1 157 65.6
Eucgr.E03472 Eucalyptus grandis HOM05D004176 ORTHO05D004845 5.4e-52 208.4 156 63.5
Lalb_Chr20g0122261 Lupinus albus HOM05D004176 ORTHO05D004845 5.4e-52 208.4 159 64.8
CiPaw.09G158600 Carya illinoinensis HOM05D004176 ORTHO05D004845 7.0e-52 208.0 185 56.8
RcHm_v2.0_Chr5g0006561 Rosa chinensis HOM05D004176 ORTHO05D004845 7.0e-52 208.0 159 64.2
Thecc.06G198200 Theobroma cacao HOM05D004176 ORTHO05D004845 7.0e-52 208.0 151 68.9
Eucgr.E03468 Eucalyptus grandis HOM05D004176 ORTHO05D004845 1.2e-51 207.2 156 62.8
Lj6g0015878 Lotus japonicus HOM05D004176 ORTHO05D004845 1.2e-51 207.2 161 64.6
Phvul.002G222800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 1.6e-51 206.8 159 66.0
VMungo0251G0350 Vigna mungo HOM05D004176 ORTHO05D004845 2.0e-51 206.5 159 65.4
Medtr2g011820 Medicago truncatula HOM05D004176 ORTHO05D004845 3.5e-51 205.7 159 62.9
CSS0038663 Camellia sinensis var. sinensis HOM05D004176 ORTHO05D004845 5.9e-51 204.9 149 67.8
Ciclev10015071m.g Citrus clementina HOM05D004176 ORTHO05D004845 1.0e-50 204.1 157 65.6
Lalb_Chr18g0059921 Lupinus albus HOM05D004176 ORTHO05D004845 1.0e-50 204.1 159 64.8
Atru.chr10.2000 Acer truncatum HOM05D004176 ORTHO05D004845 1.3e-50 203.8 156 65.4
Gohir.A10G020600 Gossypium hirsutum HOM05D004176 ORTHO05D004845 1.7e-50 203.4 153 65.4
MD05G1324800 Malus domestica HOM05D004176 ORTHO05D004845 1.7e-50 203.4 156 62.2
CsaV3_6G049850 Cucumis sativus L. HOM05D004176 ORTHO05D004845 2.3e-50 203.0 157 62.4
FvH4_3g04090 Fragaria vesca HOM05D004176 ORTHO05D004845 2.3e-50 203.0 160 62.5
FAN11G1228 Fragaria x ananassa HOM05D004176 ORTHO05D004845 2.3e-50 203.0 160 62.5
FAN16G2426 Fragaria x ananassa HOM05D004176 ORTHO05D004845 2.3e-50 203.0 160 63.1
Lalb_Chr05g0218191 Lupinus albus HOM05D004176 ORTHO05D004845 2.3e-50 203.0 156 65.4
TPR.G36758 Trifolium pratense HOM05D004176 ORTHO05D004845 2.3e-50 203.0 159 63.5
TWI63G1567 Tripterygium wilfordii HOM05D004176 ORTHO05D004845 2.9e-50 202.6 157 65.0
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 5.0e-50 201.8 159 62.9
Gohir.D05G168100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 5.0e-50 201.8 184 57.6
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 6.5e-50 201.4 159 62.9
Haze_06566 Corylus avellana HOM05D004176 ORTHO05D004845 8.6e-50 201.1 157 62.4
Gorai.011G022500 Gossypium raimondii HOM05D004176 ORTHO05D004845 8.6e-50 201.1 153 64.7
Lj1A1212T59 Lonicera japonica HOM05D004176 ORTHO05D004845 8.6e-50 201.1 159 66.0
Oeu053937.2 Olea europaea HOM05D004176 ORTHO05D004845 1.1e-49 200.7 153 63.4
Gorai.009G173200 Gossypium raimondii HOM05D004176 ORTHO05D004845 1.5e-49 200.3 156 64.7
MELO3C007311.2 Cucumis melo HOM05D004176 ORTHO05D004845 1.9e-49 199.9 157 62.4
DCAR_028122 Daucus carota HOM05D004176 ORTHO05D004845 2.5e-49 199.5 154 63.6
Migut.M01205 Erythranthe guttata HOM05D004176 ORTHO05D004845 2.5e-49 199.5 153 62.1
Glyma.15G067800 Glycine max HOM05D004176 ORTHO05D004845 2.5e-49 199.5 160 63.8
Glyma.08G058400 Glycine max HOM05D004176 ORTHO05D004845 4.2e-49 198.7 157 64.3
Sed0001897 Sechium edule HOM05D004176 ORTHO05D004845 4.2e-49 198.7 156 60.3
Hund23626 Selenicereus undatus HOM05D004176 ORTHO05D004845 5.5e-49 198.4 159 61.6
Gohir.A05G165100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 7.2e-49 198.0 156 64.7
Lsat_1_v5_gn_4_57180 Lactuca sativa HOM05D004176 ORTHO05D004845 7.2e-49 198.0 156 62.8
FAN21G0123 Fragaria x ananassa HOM05D004176 ORTHO05D004845 9.5e-49 197.6 160 61.9
Lsat_1_v5_gn_1_126440 Lactuca sativa HOM05D004176 ORTHO05D004845 1.2e-48 197.2 153 64.7
MD10G1302700 Malus domestica HOM05D004176 ORTHO05D004845 3.6e-48 195.7 155 61.3
FAN25G2335 Fragaria x ananassa HOM05D004176 ORTHO05D004845 4.7e-48 195.3 160 61.9
ECA234G4776 Erigeron canadensis HOM05D004176 ORTHO05D004845 6.1e-48 194.9 149 64.4
THA.LOC104806277 Tarenaya hassleriana HOM05D004176 ORTHO05D004845 1.4e-47 193.7 147 64.6
HPP92_014068 Vanilla planifolia HOM05D001107 ORTHO05D004845 1.8e-47 193.4 157 57.3
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 3.0e-47 192.6 144 66.0
MSTRG.15928 Avicennia marina HOM05D004176 ORTHO05D004845 3.0e-47 192.6 153 61.4
Sc05g0008050 Simmondsia chinensis HOM05D004176 ORTHO05D004845 3.0e-47 192.6 159 60.4
Sc05g0010010 Simmondsia chinensis HOM05D004176 ORTHO05D004845 3.0e-47 192.6 159 60.4
HanXRQChr16g0517801 Helianthus annuus HOM05D004176 ORTHO05D004845 4.0e-47 192.2 152 63.2
PGR042G0018 Punica granatum HOM05D004176 ORTHO05D004845 6.8e-47 191.4 160 61.9
VMungo0540G2164 Vigna mungo HOM05D004176 ORTHO05D004845 6.8e-47 191.4 160 61.9
Gohir.D10G021400 Gossypium hirsutum HOM05D004176 ORTHO05D004845 8.9e-47 191.0 145 65.5
ClCG01G022660 Citrullus lanatus HOM05D004176 ORTHO05D004845 1.2e-46 190.7 142 64.1
HPP92_001807 Vanilla planifolia HOM05D004176 ORTHO05D004845 1.2e-46 190.7 160 58.8
DCAR_024887 Daucus carota HOM05D004176 ORTHO05D004845 1.5e-46 190.3 143 65.7
Phvul.006G191800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 2.0e-46 189.9 160 59.4
Cc02_g12520 Coffea canephora HOM05D004176 ORTHO05D004845 2.6e-46 189.5 155 60.0
CAN.G289.28 Capsicum annuum HOM05D004176 ORTHO05D004845 3.4e-46 189.1 155 60.0
ECA248G3644 Erigeron canadensis HOM05D004176 ORTHO05D004845 3.4e-46 189.1 184 54.3
Cpa.g.sc1170.1 Carica papaya HOM05D004176 ORTHO05D004845 7.5e-46 188.0 153 63.4
PGSC0003DMG400005056 Solanum tuberosum HOM05D004176 ORTHO05D004845 1.7e-45 186.8 151 60.9
Sp7g19650 Schrenkiella parvula HOM05D004176 ORTHO05D004845 2.2e-45 186.4 160 60.0
HanXRQChr01g0005541 Helianthus annuus HOM05D004176 ORTHO05D004845 2.8e-45 186.0 153 61.4
AT4G21534 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 6.3e-45 184.9 155 59.4
AUR62016908 Chenopodium quinoa HOM05D004176 ORTHO05D004845 8.3e-45 184.5 161 57.8
Nitab4.5_0007109g0030 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.1e-44 184.1 156 57.7
AUR62014726 Chenopodium quinoa HOM05D004176 ORTHO05D004845 1.4e-44 183.7 161 57.8
vmacro03824 Vaccinium macrocarpon HOM05D004176 ORTHO05D004845 1.4e-44 183.7 165 60.6
Actinidia01934 Actinidia chinensis HOM05D004176 ORTHO05D004845 2.4e-44 183.0 283 42.8
BcaB03g11691 Brassica carinata HOM05D004176 ORTHO05D004845 3.1e-44 182.6 160 58.1
C07p51250 Brassica napus HOM05D004176 ORTHO05D004845 3.1e-44 182.6 160 58.8
Ah.14g088950 Amaranthus hybridus HOM05D004176 ORTHO05D004845 4.1e-44 182.2 157 59.9
BcaNung00853 Brassica carinata HOM05D004176 ORTHO05D004845 4.1e-44 182.2 160 57.5
Carub.0007s1988 Capsella rubella HOM05D004176 ORTHO05D004845 4.1e-44 182.2 160 56.2
AL7G32490 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 5.4e-44 181.8 161 57.1
BcaC06g30667 Brassica carinata HOM05D004176 ORTHO05D004845 7.0e-44 181.4 160 57.5
Peaxi162Scf00137g00128 Petunia axillaris HOM05D004176 ORTHO05D004845 1.2e-43 180.6 149 59.7
A03p52810 Brassica napus HOM05D004176 ORTHO05D004845 1.6e-43 180.3 160 56.9
Solyc03g006630.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 1.6e-43 180.3 151 60.3
A08p15120 Brassica napus HOM05D004176 ORTHO05D004845 2.0e-43 179.9 160 58.1
BraA08t33492Z Brassica rapa HOM05D004176 ORTHO05D004845 2.0e-43 179.9 160 58.1
Solyc02g079030.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 2.0e-43 179.9 156 59.6
ATR0693G103 Amborella trichopoda HOM05D004176 ORTHO05D004845 4.5e-43 178.7 151 60.9
HPP92_000922 Vanilla planifolia HOM05D004176 ORTHO05D004845 4.5e-43 178.7 153 56.2
Zm00001eb324260 Zea mays HOM05D004176 ORTHO05D004845 4.5e-43 178.7 154 57.8
Sp7g19660 Schrenkiella parvula HOM05D004176 ORTHO05D004845 5.9e-43 178.3 155 58.7
Nitab4.5_0003465g0060 Nicotiana tabacum HOM05D004176 ORTHO05D004845 7.8e-43 177.9 157 57.3
Sopen03g002640 Solanum pennellii HOM05D004176 ORTHO05D004845 7.8e-43 177.9 151 58.9
BcaC01g00694 Brassica carinata HOM05D004176 ORTHO05D004845 1.3e-42 177.2 119 70.6
CARHR228200 Cardamine hirsuta HOM05D004176 ORTHO05D004845 1.3e-42 177.2 160 56.9
C03p83270 Brassica napus HOM05D004176 ORTHO05D004845 1.7e-42 176.8 119 70.6
Sopen02g023840 Solanum pennellii HOM05D004176 ORTHO05D004845 1.7e-42 176.8 153 59.5
PGSC0003DMG400022361 Solanum tuberosum HOM05D004176 ORTHO05D004845 1.7e-42 176.8 153 59.5
Carub.0007s1987 Capsella rubella HOM05D004176 ORTHO05D004845 2.9e-42 176.0 160 56.9
BolC3t20608H Brassica oleracea HOM05D004176 ORTHO05D004845 3.8e-42 175.6 119 69.7
Zm00001eb106910 Zea mays HOM05D004176 ORTHO05D004845 3.8e-42 175.6 160 55.6
CARHR228210 Cardamine hirsuta HOM05D004176 ORTHO05D004845 5.0e-42 175.3 154 57.1
Thhalv10025046m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 5.0e-42 175.3 185 50.8
SGA_v2.0_scaffold1019G53794 Striga asiatica HOM05D004176 ORTHO05D004845 6.6e-42 174.9 153 54.9
Peaxi162Scf00588g00910 Petunia axillaris HOM05D004176 ORTHO05D004845 8.6e-42 174.5 154 56.5
CAN.G1181.22 Capsicum annuum HOM05D004176 ORTHO05D004845 1.1e-41 174.1 150 59.3
Nitab4.5_0003574g0080 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.1e-41 174.1 151 58.9
BolC7t45624H Brassica oleracea HOM05D004176 ORTHO05D004845 2.5e-41 172.9 161 56.5
Thhalv10025052m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 5.6e-41 171.8 162 55.6
AT4G21540 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 9.5e-41 171.0 160 54.4
Os01g0782200 Oryza sativa ssp. japonica HOM05D004176 ORTHO05D004845 9.5e-41 171.0 179 50.3
BraA03t14357Z Brassica rapa HOM05D004176 ORTHO05D004845 1.2e-40 170.6 161 55.9
AL7G32480 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 6.1e-40 168.3 160 55.6
SMO361G0397 Selaginella moellendorffii HOM05D004176 ORTHO05D004845 1.3e-37 160.6 148 50.7
Nn1g06749 Nelumbo nucifera HOM05D004176 ORTHO05D004845 4.9e-37 158.7 286 36.7
Pp3c10_6970 Physcomitrium patens HOM05D004176 ORTHO05D004845 2.0e-35 153.3 177 45.8
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 3.9e-34 149.1 148 49.3
Nitab4.5_0021410g0010 Nicotiana tabacum HOM05D004176 ORTHO05D004845 8.9e-31 137.9 88 75.0
Mapoly0139s0005 Marchantia polymorpha HOM05D004176 ORTHO05D004845 3.4e-30 136.0 178 41.0
Zm00001eb367080 Zea mays HOM05D004176 ORTHO05D004845 2.9e-29 132.9 91 67.0
Zm00001eb135180 Zea mays HOM05D004176 ORTHO05D004845 6.4e-29 131.7 98 63.3
Zm00001eb309690 Zea mays HOM05D004176 ORTHO05D004845 1.1e-28 131.0 84 69.0
SEGI_19486 Sequoiadendron giganteum HOM05D004176 ORTHO05D004845 1.9e-28 130.2 92 67.4
EL10Ac8g20615 Beta vulgaris HOM05D004176 ORTHO05D004845 1.2e-27 127.5 184 41.8
unitig_37.g12341 Utricularia gibba HOM05D004176 ORTHO05D001465 2.7e-27 126.3 157 44.6
CDE05G0007 Ceratophyllum demersum HOM05D004176 ORTHO05D004845 2.3e-26 123.2 116 52.6
CBR_g30282 Chara braunii HOM05D004176 ORTHO05D004845 2.0e-22 110.2 107 47.7
CAN.G491.5 Capsicum annuum HOM05D004176 ORTHO05D004845 2.6e-22 109.8 107 51.4
CAN.G450.4 Capsicum annuum HOM05D004176 ORTHO05D004845 6.0e-19 98.6 79 58.2
PRCOL_00005757 Prasinoderma coloniale HOM05D004176 ORTHO05D004845 3.3e-17 92.8 117 41.0
MCO02G016 Micromonas commoda HOM05D004176 ORTHO05D004845 1.2e-14 84.3 110 36.4
Lj4g0017719 Lotus japonicus HOM05D004176 ORTHO05D004845 4.9e-13 79.0 79 53.2
Glyma.13G246000 Glycine max HOM05D004176 ORTHO05D004845 2.1e-08 63.5 38 78.9
Cre12.g530550 Chlamydomonas reinhardtii HOM05D004176 ORTHO05D004845 2.8e-08 63.2 102 35.3
Zm00001eb186450 Zea mays HOM05D006112 ORTHO05D007898 6.9e-07 58.5 131 28.2
HPP92_025696 Vanilla planifolia HOM05D006112 ORTHO05D007898 9.0e-07 58.2 158 29.1
QL05p088277 Quercus lobata HOM05D003602 ORTHO05D007458 2.6e-06 56.6 58 48.3
QL10p039122 Quercus lobata HOM05D003602 ORTHO05D004808 9.9e-06 54.7 54 48.1


User provided reference genes

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