Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1858 Trochodendron aralioides HOM05D003356 ORTHO05D004362 9.8e-62 240.0 122 100.0
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 1.6e-59 232.6 122 94.3
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 4.5e-59 231.1 122 95.9
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 1.3e-58 229.6 119 95.8
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 1.7e-58 229.2 119 95.8
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 1.7e-58 229.2 119 95.8
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 1.7e-58 229.2 119 95.8
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 2.3e-58 228.8 121 93.4
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 2.3e-58 228.8 121 93.4
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 2.3e-58 228.8 119 95.0
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 2.9e-58 228.4 119 95.0
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 3.9e-58 228.0 119 95.0
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 5.0e-58 227.6 118 96.6
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 5.0e-58 227.6 118 95.8
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 6.6e-58 227.3 121 92.6
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 8.6e-58 226.9 121 92.6
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 8.6e-58 226.9 121 92.6
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 2.5e-57 225.3 121 91.7
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 7.3e-57 223.8 118 94.1
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 7.3e-57 223.8 119 93.3
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 7.3e-57 223.8 121 94.2
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 7.3e-57 223.8 118 94.1
TWI39G1274 Tripterygium wilfordii HOM05D003356 ORTHO05D004362 9.5e-57 223.4 118 94.9
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 1.6e-56 222.6 118 94.1
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 2.1e-56 222.2 121 91.7
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 2.1e-56 222.2 118 94.1
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 2.8e-56 221.9 118 92.4
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 4.7e-56 221.1 118 91.5
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 4.7e-56 221.1 119 91.6
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 4.7e-56 221.1 118 90.7
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 6.1e-56 220.7 119 90.8
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 8.0e-56 220.3 118 91.5
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 1.0e-55 219.9 118 93.2
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 1.4e-55 219.5 118 91.5
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 1.4e-55 219.5 118 91.5
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 1.8e-55 219.2 119 93.3
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 1.8e-55 219.2 120 89.2
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 1.8e-55 219.2 118 91.5
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 2.3e-55 218.8 118 90.7
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 4.0e-55 218.0 118 89.8
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 5.2e-55 217.6 117 90.6
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 5.2e-55 217.6 118 89.0
Cc05_g12210 Coffea canephora HOM05D003356 ORTHO05D004362 5.2e-55 217.6 118 91.5
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 5.2e-55 217.6 121 89.3
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 6.8e-55 217.2 118 90.7
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 8.9e-55 216.9 118 90.7
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 8.9e-55 216.9 118 90.7
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 8.9e-55 216.9 118 89.0
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 1.2e-54 216.5 119 93.3
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 1.2e-54 216.5 119 88.2
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.2e-54 216.5 118 90.7
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 1.2e-54 216.5 122 86.1
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 1.2e-54 216.5 118 91.5
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 1.2e-54 216.5 118 89.8
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 1.5e-54 216.1 117 89.7
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 1.5e-54 216.1 118 89.8
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 2.0e-54 215.7 117 90.6
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 2.0e-54 215.7 118 89.0
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 2.0e-54 215.7 122 89.3
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 2.0e-54 215.7 122 89.3
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 2.6e-54 215.3 119 87.4
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 3.4e-54 214.9 119 91.6
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 3.4e-54 214.9 118 89.8
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 3.4e-54 214.9 118 89.8
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 4.4e-54 214.5 119 86.6
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 5.8e-54 214.2 118 88.1
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 5.8e-54 214.2 118 90.7
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 5.8e-54 214.2 119 87.4
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 7.5e-54 213.8 120 88.3
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 7.5e-54 213.8 122 86.1
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 1.3e-53 213.0 118 88.1
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 1.7e-53 212.6 119 87.4
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 1.7e-53 212.6 119 87.4
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 2.2e-53 212.2 119 88.2
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 2.9e-53 211.8 122 83.6
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 2.9e-53 211.8 118 87.3
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 3.7e-53 211.5 118 89.0
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 6.4e-53 210.7 118 87.3
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 6.4e-53 210.7 118 88.1
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 8.3e-53 210.3 122 84.4
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 8.3e-53 210.3 118 88.1
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 1.1e-52 209.9 118 88.1
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 1.4e-52 209.5 118 85.6
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 1.4e-52 209.5 118 85.6
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 1.4e-52 209.5 116 87.9
Lalb_Chr19g0134291 Lupinus albus HOM05D003356 ORTHO05D004362 1.4e-52 209.5 119 84.9
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 1.4e-52 209.5 118 88.1
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 2.4e-52 208.8 118 85.6
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 2.4e-52 208.8 123 88.6
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 2.4e-52 208.8 118 87.3
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 3.2e-52 208.4 122 86.1
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 3.2e-52 208.4 118 88.1
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 3.2e-52 208.4 119 88.2
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 3.2e-52 208.4 118 83.9
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 3.2e-52 208.4 118 90.7
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 4.1e-52 208.0 113 89.4
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 5.4e-52 207.6 118 89.0
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 7.0e-52 207.2 118 86.4
Lalb_Chr25g0286481 Lupinus albus HOM05D003356 ORTHO05D004362 1.2e-51 206.5 119 87.4
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 1.2e-51 206.5 118 85.6
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 1.6e-51 206.1 113 90.3
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 2.0e-51 205.7 123 87.0
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 1.0e-50 203.4 112 87.5
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 1.7e-50 202.6 113 87.6
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 3.0e-50 201.8 119 83.2
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 3.0e-50 201.8 119 83.2
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 3.9e-50 201.4 117 84.6
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 3.9e-50 201.4 119 84.0
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 6.6e-50 200.7 112 86.6
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 6.6e-50 200.7 118 81.4
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 1.9e-49 199.1 117 82.9
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 3.3e-49 198.4 112 86.6
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 4.3e-49 198.0 117 83.8
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 4.3e-49 198.0 118 81.4
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 7.3e-49 197.2 118 83.1
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 7.3e-49 197.2 118 81.4
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 9.5e-49 196.8 117 82.9
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 1.6e-48 196.1 118 82.2
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 2.8e-48 195.3 117 82.9
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 3.6e-48 194.9 119 81.5
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 4.7e-48 194.5 120 79.2
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 6.2e-48 194.1 120 80.8
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 1.1e-47 193.4 119 80.7
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 1.1e-47 193.4 119 77.3
Dinv08306 Davidia involucrata HOM05D003356 ORTHO05D004362 1.8e-47 192.6 118 85.6
HPP92_020871 Vanilla planifolia HOM05D003356 ORTHO05D004362 1.8e-47 192.6 120 78.3
AL3G27910 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 2.3e-47 192.2 119 79.8
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 2.3e-47 192.2 119 80.7
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 4.0e-47 191.4 118 80.5
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 4.0e-47 191.4 118 80.5
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 4.0e-47 191.4 118 80.5
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 4.0e-47 191.4 118 80.5
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 6.8e-47 190.7 119 79.0
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 6.8e-47 190.7 112 82.1
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 6.8e-47 190.7 121 80.2
ECA236G3466 Erigeron canadensis HOM05D003356 ORTHO05D004362 8.9e-47 190.3 117 79.5
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 8.9e-47 190.3 118 80.5
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 2.6e-46 188.7 119 78.2
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 4.4e-46 188.0 120 77.5
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 5.8e-46 187.6 116 78.4
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 1.7e-45 186.0 112 83.9
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 2.9e-45 185.3 111 81.1
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 2.9e-45 185.3 111 81.1
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 2.9e-45 185.3 111 81.1
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 6.4e-45 184.1 111 81.1
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 7.1e-36 154.1 107 65.4
Pp3c9_13290 Physcomitrium patens HOM05D003356 ORTHO05D004362 1.6e-35 152.9 107 65.4
arahy.Tifrunner.gnm1.ann1.4J6IUL Arachis hypogaea HOM05D003356 ORTHO05D004362 2.4e-31 139.0 112 69.6
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 1.7e-29 132.9 112 58.0
Pp3c13_16790 Physcomitrium patens HOM05D003356 ORTHO05D004362 2.9e-29 132.1 113 54.0
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 3.0e-26 122.1 70 82.9
CBR_g34641 Chara braunii HOM05D003356 ORTHO05D004362 1.9e-25 119.4 107 52.3
AL230U10050 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 2.5e-25 119.0 119 56.3
MCO09G800 Micromonas commoda HOM05D003356 ORTHO05D004362 1.6e-24 116.3 106 54.7
CBR_g34644 Chara braunii HOM05D003356 ORTHO05D004362 3.6e-24 115.2 107 51.4
HPP92_014740 Vanilla planifolia HOM05D003356 ORTHO05D031488 2.4e-23 112.5 63 84.1
Dinv07551 Davidia involucrata HOM05D003356 ORTHO05D004362 8.4e-21 104.0 56 89.3
arahy.Tifrunner.gnm1.ann1.H20E9K Arachis hypogaea HOM05D003356 ORTHO05D031488 1.4e-20 103.2 60 81.7
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 2.4e-20 102.4 58 84.5
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 1.6e-19 99.8 58 82.8
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 1.7e-18 96.3 118 38.1
PRCOL_00004496 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 2.3e-18 95.9 121 38.8
BcaB04g20929 Brassica carinata HOM05D003356 ORTHO05D031488 6.9e-15 84.3 55 76.4
MCO04G353 Micromonas commoda HOM05D003356 ORTHO05D004362 2.6e-14 82.4 107 42.1
Rhsim04G0019900 Rhododendron simsii HOM05D055487 ORTHO05D338639 1.4e-12 76.6 61 65.6
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 1.9e-12 76.3 111 37.8
AagrBONN_evm.TU.Sc2ySwM_362.248 Anthoceros agrestis HOM05D003356 ORTHO05D004362 6.0e-11 71.2 115 32.2
arahy.Tifrunner.gnm1.ann1.93B9CG Arachis hypogaea HOM05D003356 ORTHO05D004362 7.9e-11 70.9 44 79.5
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 7.9e-11 70.9 63 57.1
DCAR_008042 Daucus carota HOM05D003356 ORTHO05D004362 1.2e-06 57.0 41 73.2


User provided reference genes

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