Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1791 Trochodendron aralioides HOM05D003753 ORTHO05D014439 2.6e-52 208.4 102 100.0
Cfa003094 Carpinus fangiana HOM05D003753 ORTHO05D005081 2.3e-32 142.1 72 90.3
Haze_25905 Corylus avellana HOM05D003753 ORTHO05D005081 2.3e-32 142.1 72 90.3
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 4.0e-32 141.4 74 87.8
Eucgr.C03892 Eucalyptus grandis HOM05D003753 ORTHO05D005081 5.2e-32 141.0 72 88.9
Glyma.05G147800 Glycine max HOM05D003753 ORTHO05D005081 6.8e-32 140.6 72 87.5
Sed0008570 Sechium edule HOM05D003753 ORTHO05D005081 6.8e-32 140.6 72 88.9
Sed0009681 Sechium edule HOM05D003753 ORTHO05D005081 6.8e-32 140.6 72 88.9
VMungo0251G1718 Vigna mungo HOM05D003753 ORTHO05D005081 6.8e-32 140.6 72 87.5
TAR624G1221 Trochodendron aralioides HOM05D003753 ORTHO05D005081 8.8e-32 140.2 74 86.5
Thecc.09G090200 Theobroma cacao HOM05D003753 ORTHO05D005081 1.2e-31 139.8 75 86.7
Dinv36761 Davidia involucrata HOM05D003753 ORTHO05D005081 2.0e-31 139.0 74 86.5
Manes.08G173100 Manihot esculenta HOM05D003753 ORTHO05D005081 2.0e-31 139.0 72 88.9
Atru.chr7.1580 Acer truncatum HOM05D003753 ORTHO05D005081 2.6e-31 138.7 71 88.7
Potri.005G074400 Populus trichocarpa HOM05D003753 ORTHO05D005081 2.6e-31 138.7 72 87.5
Ciclev10010770m.g Citrus clementina HOM05D003753 ORTHO05D005081 3.4e-31 138.3 71 85.9
Duzib150G1398 Durio zibethinus HOM05D003753 ORTHO05D005081 3.4e-31 138.3 75 85.3
Lalb_Chr07g0187091 Lupinus albus HOM05D003753 ORTHO05D005081 4.4e-31 137.9 72 84.7
MBI06_g13419_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 4.4e-31 137.9 75 81.3
Phvul.008G006800 Phaseolus vulgaris HOM05D003753 ORTHO05D005081 4.4e-31 137.9 72 86.1
arahy.Tifrunner.gnm1.ann1.JW8PS1 Arachis hypogaea HOM05D003753 ORTHO05D005081 5.7e-31 137.5 72 86.1
CiPaw.08G138800 Carya illinoinensis HOM05D003753 ORTHO05D005081 5.7e-31 137.5 71 85.9
CiPaw.08G159100 Carya illinoinensis HOM05D003753 ORTHO05D005081 5.7e-31 137.5 71 87.3
Ciclev10004888m.g Citrus clementina HOM05D003753 ORTHO05D005081 5.7e-31 137.5 71 85.9
MELO3C015462.2 Cucumis melo HOM05D003753 ORTHO05D005081 5.7e-31 137.5 72 86.1
CsaV3_1G040350 Cucumis sativus L. HOM05D003753 ORTHO05D005081 5.7e-31 137.5 72 86.1
Glyma.08G104700 Glycine max HOM05D003753 ORTHO05D005081 5.7e-31 137.5 72 86.1
Actinidia25255 Actinidia chinensis HOM05D003753 ORTHO05D005081 7.5e-31 137.1 76 81.6
ClCG03G015660 Citrullus lanatus HOM05D003753 ORTHO05D005081 7.5e-31 137.1 72 87.5
Gohir.A07G010600 Gossypium hirsutum HOM05D003753 ORTHO05D005081 7.5e-31 137.1 75 85.3
Gohir.D07G010900 Gossypium hirsutum HOM05D003753 ORTHO05D005081 7.5e-31 137.1 75 85.3
Gorai.001G011300 Gossypium raimondii HOM05D003753 ORTHO05D005081 7.5e-31 137.1 75 85.3
Prupe.7G211000 Prunus persica HOM05D003753 ORTHO05D005081 7.5e-31 137.1 71 87.3
MSTRG.18971 Avicennia marina HOM05D003753 ORTHO05D005081 1.3e-30 136.3 74 85.1
Cpa.g.sc83.92 Carica papaya HOM05D003753 ORTHO05D005081 1.3e-30 136.3 72 84.7
Lalb_Chr13g0294391 Lupinus albus HOM05D003753 ORTHO05D005081 1.7e-30 136.0 72 83.3
TWI34G0041 Tripterygium wilfordii HOM05D003753 ORTHO05D005081 1.7e-30 136.0 71 87.3
Ca_18022_v3 Cicer arietinum L. HOM05D003753 ORTHO05D005081 2.2e-30 135.6 72 86.1
Duzib187G1746 Durio zibethinus HOM05D003753 ORTHO05D005081 2.2e-30 135.6 69 89.9
Medtr8g080700 Medicago truncatula HOM05D003753 ORTHO05D005081 2.2e-30 135.6 72 86.1
Potri.007G094000 Populus trichocarpa HOM05D003753 ORTHO05D005081 2.2e-30 135.6 72 86.1
Lj4g0022105 Lotus japonicus HOM05D003753 ORTHO05D005081 2.8e-30 135.2 72 83.3
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 2.8e-30 135.2 72 83.3
Sabra07G0077800 Salix brachista HOM05D003753 ORTHO05D005081 2.8e-30 135.2 72 86.1
Aqoxy7G01225 Aquilegia oxysepala HOM05D003753 ORTHO05D005081 3.7e-30 134.8 69 91.3
COL.COLO4_18208 Corchorus olitorius HOM05D003753 ORTHO05D005081 3.7e-30 134.8 75 82.7
MD15G1206400 Malus domestica HOM05D003753 ORTHO05D005081 4.8e-30 134.4 71 84.5
Oeu018239.1 Olea europaea HOM05D003753 ORTHO05D005081 4.8e-30 134.4 76 78.9
THA.LOC104814615 Tarenaya hassleriana HOM05D003753 ORTHO05D005081 4.8e-30 134.4 72 83.3
arahy.Tifrunner.gnm1.ann1.D26Z0K Arachis hypogaea HOM05D003753 ORTHO05D005081 6.3e-30 134.0 72 84.7
CARHR109970 Cardamine hirsuta HOM05D003753 ORTHO05D005081 6.3e-30 134.0 72 83.3
FvH4_1g07300 Fragaria vesca HOM05D003753 ORTHO05D005081 6.3e-30 134.0 71 83.1
FAN19G2460 Fragaria x ananassa HOM05D003753 ORTHO05D005081 6.3e-30 134.0 71 83.1
Nn8g38881 Nelumbo nucifera HOM05D003753 ORTHO05D005081 6.3e-30 134.0 72 84.7
RcHm_v2.0_Chr2g0093231 Rosa chinensis HOM05D003753 ORTHO05D005081 6.3e-30 134.0 71 83.1
BcaC06g36597 Brassica carinata HOM05D003753 ORTHO05D005081 1.1e-29 133.3 71 85.9
PSO210G0422 Papaver somniferum HOM05D003753 ORTHO05D005081 1.1e-29 133.3 71 83.1
PSO210G4643 Papaver somniferum HOM05D003753 ORTHO05D005081 1.1e-29 133.3 71 83.1
GSVIVG01015210001 Vitis vinifera HOM05D003753 ORTHO05D005081 1.1e-29 133.3 70 85.7
CSS0046684 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 1.4e-29 132.9 74 79.7
Peaxi162Scf00083g00426 Petunia axillaris HOM05D003753 ORTHO05D005081 1.4e-29 132.9 74 79.7
QL02p062809 Quercus lobata HOM05D003753 ORTHO05D005081 1.4e-29 132.9 70 85.7
Rhsim03G0233000 Rhododendron simsii HOM05D003753 ORTHO05D005081 1.4e-29 132.9 75 77.3
vmacro06286 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 1.4e-29 132.9 75 78.7
vmacro23429 Vaccinium macrocarpon HOM05D003753 ORTHO05D005081 1.4e-29 132.9 75 78.7
HPP92_012451 Vanilla planifolia HOM05D003753 ORTHO05D005081 1.4e-29 132.9 72 81.9
Thhalv10022672m.g Eutrema salsugineum HOM05D003753 ORTHO05D005081 1.8e-29 132.5 71 83.1
Carub.0003s3383 Capsella rubella HOM05D003753 ORTHO05D005081 2.4e-29 132.1 72 81.9
ECA236G2053 Erigeron canadensis HOM05D003753 ORTHO05D005081 2.4e-29 132.1 72 81.9
HanXRQChr06g0178531 Helianthus annuus HOM05D003753 ORTHO05D005081 2.4e-29 132.1 74 79.7
Nitab4.5_0005634g0050 Nicotiana tabacum HOM05D003753 ORTHO05D005081 2.4e-29 132.1 74 78.4
Nitab4.5_0011030g0020 Nicotiana tabacum HOM05D003753 ORTHO05D005081 2.4e-29 132.1 74 78.4
DCAR_011977 Daucus carota HOM05D003753 ORTHO05D005081 3.1e-29 131.7 71 84.5
FAN23G2028 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.1e-29 131.7 71 81.7
FAN26G1206 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.1e-29 131.7 71 81.7
FAN26G3279 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.1e-29 131.7 71 81.7
FAN28G1000 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.1e-29 131.7 71 81.7
Lj7A675G38 Lonicera japonica HOM05D003753 ORTHO05D005081 3.1e-29 131.7 72 80.6
MD02G1077800 Malus domestica HOM05D003753 ORTHO05D005081 3.1e-29 131.7 71 83.1
SalBow6G3809 Salvia bowleyana HOM05D003753 ORTHO05D005081 3.1e-29 131.7 72 81.9
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 4.1e-29 131.3 73 82.2
Hund06681 Selenicereus undatus HOM05D003753 ORTHO05D005081 4.1e-29 131.3 71 83.1
EL10Ac8g19226 Beta vulgaris HOM05D003753 ORTHO05D005081 5.4e-29 131.0 72 80.6
CDE06G0756 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 5.4e-29 131.0 74 78.4
HanXRQChr11g0321581 Helianthus annuus HOM05D003753 ORTHO05D005081 5.4e-29 131.0 74 78.4
Sc18g0002060 Simmondsia chinensis HOM05D003753 ORTHO05D005081 5.4e-29 131.0 74 77.0
Sp3g32920 Schrenkiella parvula HOM05D003753 ORTHO05D005081 7.0e-29 130.6 70 82.9
PGSC0003DMG400025556 Solanum tuberosum HOM05D003753 ORTHO05D005081 7.0e-29 130.6 72 80.6
Aa31LG8G16560 Aethionema arabicum HOM05D003753 ORTHO05D005081 9.1e-29 130.2 72 80.6
Migut.J00089 Erythranthe guttata HOM05D003753 ORTHO05D005081 1.2e-28 129.8 72 80.6
Solyc07g039200.4 Solanum lycopersicum HOM05D003753 ORTHO05D005081 1.2e-28 129.8 72 79.2
C07p02380 Brassica napus HOM05D003753 ORTHO05D005081 1.6e-28 129.4 71 83.1
BolC7t40644H Brassica oleracea HOM05D003753 ORTHO05D005081 1.6e-28 129.4 71 83.1
Sopen07g017550 Solanum pennellii HOM05D003753 ORTHO05D005081 1.6e-28 129.4 72 79.2
PGSC0003DMG400013154 Solanum tuberosum HOM05D003753 ORTHO05D005081 1.6e-28 129.4 72 79.2
SGA_v2.0_scaffold75G25039 Striga asiatica HOM05D003753 ORTHO05D005081 1.6e-28 129.4 72 79.2
AT2G19540 Arabidopsis thaliana HOM05D003753 ORTHO05D005081 2.0e-28 129.0 72 80.6
CSS0005601 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 2.0e-28 129.0 75 74.7
Lsat_1_v5_gn_2_117981 Lactuca sativa HOM05D003753 ORTHO05D005081 2.0e-28 129.0 71 80.3
Sopen05g009100 Solanum pennellii HOM05D003753 ORTHO05D005081 2.0e-28 129.0 97 62.9
BcaB08g34872 Brassica carinata HOM05D003753 ORTHO05D005081 2.7e-28 128.6 69 82.6
BcaC07g41247 Brassica carinata HOM05D003753 ORTHO05D005081 2.7e-28 128.6 69 82.6
A09p12430 Brassica napus HOM05D003753 ORTHO05D005081 2.7e-28 128.6 71 80.3
A09p59260 Brassica napus HOM05D003753 ORTHO05D005081 2.7e-28 128.6 69 82.6
C08p42530 Brassica napus HOM05D003753 ORTHO05D005081 2.7e-28 128.6 69 82.6
BolC8t51814H Brassica oleracea HOM05D003753 ORTHO05D005081 2.7e-28 128.6 69 82.6
BraA09t36888Z Brassica rapa HOM05D003753 ORTHO05D005081 2.7e-28 128.6 71 80.3
BraA09t41308Z Brassica rapa HOM05D003753 ORTHO05D005081 2.7e-28 128.6 69 82.6
CANSAT56G3520 Cannabis sativa HOM05D003753 ORTHO05D005081 2.7e-28 128.6 72 77.8
Sopen05g009090 Solanum pennellii HOM05D003753 ORTHO05D005081 2.7e-28 128.6 97 61.9
Sopen05g016940 Solanum pennellii HOM05D003753 ORTHO05D005081 2.7e-28 128.6 97 61.9
Ah.13g077350 Amaranthus hybridus HOM05D003753 ORTHO05D005081 3.5e-28 128.3 71 80.3
BcaC04g22845 Brassica carinata HOM05D003753 ORTHO05D005081 3.5e-28 128.3 71 80.3
C09p14710 Brassica napus HOM05D003753 ORTHO05D005081 3.5e-28 128.3 71 80.3
BolC9t54374H Brassica oleracea HOM05D003753 ORTHO05D005081 3.5e-28 128.3 71 80.3
Lsat_1_v5_gn_8_87641 Lactuca sativa HOM05D003753 ORTHO05D005081 3.5e-28 128.3 71 80.3
TPR.G17083 Trifolium pratense HOM05D003753 ORTHO05D005081 4.5e-28 127.9 70 82.9
CAN.G732.16 Capsicum annuum HOM05D003753 ORTHO05D005081 5.9e-28 127.5 72 77.8
Cc06_g11340 Coffea canephora HOM05D003753 ORTHO05D005081 5.9e-28 127.5 74 77.0
Os11g0134500 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 1.0e-27 126.7 74 78.4
Os12g0132400 Oryza sativa ssp. japonica HOM05D003753 ORTHO05D005081 1.0e-27 126.7 74 78.4
AUR62027495 Chenopodium quinoa HOM05D003753 ORTHO05D005081 1.7e-27 125.9 72 76.4
PSO541G3309 Papaver somniferum HOM05D003753 ORTHO05D005081 2.9e-27 125.2 71 76.1
Solyc05g014090.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 2.9e-27 125.2 97 61.9
AUR62033985 Chenopodium quinoa HOM05D003753 ORTHO05D005081 5.0e-27 124.4 72 75.0
Solyc05g025630.3 Solanum lycopersicum HOM05D003753 ORTHO05D005081 6.5e-27 124.0 97 59.8
Zm00001eb354080 Zea mays HOM05D003753 ORTHO05D005081 6.5e-27 124.0 75 76.0
Zm00001eb163470 Zea mays HOM05D003753 ORTHO05D005081 1.9e-26 122.5 75 74.7
Lj4g0004391 Lotus japonicus HOM05D003753 ORTHO05D005081 3.3e-26 121.7 67 83.6
Solyc05g018780.1 Solanum lycopersicum HOM05D003753 ORTHO05D005081 5.5e-26 120.9 72 72.2
Sabra05G0061300 Salix brachista HOM05D003753 ORTHO05D005081 9.5e-26 120.2 64 84.4
ATR0807G172 Amborella trichopoda HOM05D003753 ORTHO05D005081 1.6e-25 119.4 71 74.6
SEGI_09916 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 1.6e-25 119.4 73 69.9
BraA07t27911Z Brassica rapa HOM05D003753 ORTHO05D005081 2.1e-25 119.0 66 80.3
FAN23G0946 Fragaria x ananassa HOM05D003753 ORTHO05D005081 3.6e-25 118.2 64 81.2
A07p01230 Brassica napus HOM05D003753 ORTHO05D005081 6.1e-25 117.5 64 81.2
SEGI_14219 Sequoiadendron giganteum HOM05D003753 ORTHO05D005081 3.0e-24 115.2 66 74.2
SHI20703 Sapria himalayana HOM05D003753 ORTHO05D005081 5.2e-24 114.4 71 73.2
Medtr5g024090 Medicago truncatula HOM05D003753 ORTHO05D005081 1.2e-23 113.2 85 65.9
unitig_699.g19554 Utricularia gibba HOM05D003753 ORTHO05D005081 1.2e-23 113.2 74 73.0
CDE08G0675 Ceratophyllum demersum HOM05D003753 ORTHO05D005081 2.2e-22 109.0 57 84.2
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 2.8e-22 108.6 56 87.5
Hma1.2p1_0798F.1_g219790 Hydrangea macrophylla HOM05D003753 ORTHO05D005081 5.4e-21 104.4 58 79.3
Mapoly0090s0067 Marchantia polymorpha HOM05D003753 ORTHO05D005081 7.0e-21 104.0 69 68.1
Pp3c12_16950 Physcomitrium patens HOM05D003753 ORTHO05D005081 2.7e-20 102.1 69 68.1
CBR_g58801 Chara braunii HOM05D003753 ORTHO05D005081 3.3e-18 95.1 66 65.2
MBI06_g38946_MAGBIO Magnolia biondii HOM05D003753 ORTHO05D005081 9.5e-18 93.6 75 60.0
BcaC05g28541 Brassica carinata HOM05D003753 ORTHO05D005081 6.1e-17 90.9 71 63.4
Zm00001eb349180 Zea mays HOM05D000087 ORTHO05D001941 7.5e-15 84.0 47 74.5
SMO169G0114 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 9.8e-15 83.6 75 56.0
BcaC07g38120 Brassica carinata HOM05D003753 ORTHO05D014439 1.3e-14 83.2 71 57.7
Cre17.g724850 Chlamydomonas reinhardtii HOM05D003753 ORTHO05D005081 2.9e-14 82.0 66 59.1
MCO09G725 Micromonas commoda HOM05D003753 ORTHO05D005081 2.9e-14 82.0 66 59.1
PRCOL_00005408 Prasinoderma coloniale HOM05D003753 ORTHO05D005081 3.2e-13 78.6 63 58.7
SMO270G0139 Selaginella moellendorffii HOM05D003753 ORTHO05D005081 7.0e-13 77.4 63 55.6
BolC8t48542H Brassica oleracea HOM05D003753 ORTHO05D014439 1.7e-11 72.8 60 58.3
BcaB01g02572 Brassica carinata HOM05D003753 ORTHO05D020007 4.7e-09 64.7 69 53.6
BcaC06g34676 Brassica carinata HOM05D003753 ORTHO05D020007 4.7e-09 64.7 61 54.1
A07p13640 Brassica napus HOM05D003753 ORTHO05D020007 6.8e-08 60.8 61 50.8
Cfa024003 Carpinus fangiana HOM05D003753 ORTHO05D123424 6.4e-06 54.3 58 44.8


User provided reference genes

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