Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 8.0e-186 653.7 345 100.0
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 6.9e-153 544.3 349 81.9
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 2.0e-152 542.7 346 81.5
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.6e-152 542.3 345 81.2
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 1.3e-151 540.0 344 82.6
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 2.9e-151 538.9 347 83.9
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 6.4e-151 537.7 339 82.3
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.1e-150 537.0 340 81.8
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.4e-150 535.8 344 81.1
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 3.5e-149 531.9 343 79.6
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 3.9e-148 528.5 333 82.9
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 6.7e-148 527.7 340 81.8
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 2.5e-147 525.8 343 80.8
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 9.6e-147 523.9 334 81.1
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 1.4e-145 520.0 340 80.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 1.8e-145 519.6 332 81.9
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 1.8e-145 519.6 349 79.7
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.0e-144 516.2 336 80.7
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 5.8e-144 514.6 355 77.7
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 7.6e-144 514.2 338 79.3
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 1.7e-143 513.1 338 79.9
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.7e-143 513.1 344 77.0
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.8e-143 511.9 333 79.9
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 6.4e-143 511.1 331 81.0
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 1.4e-142 510.0 326 81.6
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.2e-141 506.9 342 77.5
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 2.1e-141 506.1 335 78.8
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 2.1e-141 506.1 330 80.6
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 6.0e-141 504.6 323 80.2
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 7.9e-141 504.2 330 80.3
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 6.7e-140 501.1 330 80.0
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 6.7e-140 501.1 331 79.5
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 8.7e-140 500.7 340 76.2
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 1.1e-137 493.8 335 76.7
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 6.9e-137 491.1 333 76.0
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 1.2e-136 490.3 337 75.4
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 1.2e-136 490.3 341 74.5
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 7.6e-136 487.6 333 76.3
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 1.0e-135 487.3 335 76.1
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 1.3e-135 486.9 335 75.8
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 2.2e-135 486.1 342 74.9
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 4.9e-135 485.0 337 73.9
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 3.2e-134 482.3 339 72.6
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 9.3e-134 480.7 346 72.8
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 2.7e-133 479.2 367 71.4
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.0e-132 477.2 336 76.2
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 1.8e-132 476.5 277 87.0
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.9e-132 475.3 336 75.9
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.1e-132 474.9 320 77.8
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.1e-131 473.8 330 75.2
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.1e-131 473.8 330 74.8
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.1e-131 473.8 340 74.4
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 1.9e-131 473.0 313 78.0
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 4.3e-131 471.9 330 74.2
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 5.7e-131 471.5 330 74.5
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 2.8e-130 469.2 342 72.8
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 6.3e-130 468.0 327 74.0
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 6.3e-130 468.0 337 75.4
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 1.4e-129 466.8 319 74.3
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.8e-129 466.5 330 74.8
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 2.4e-129 466.1 330 73.9
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 3.1e-129 465.7 330 73.6
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 3.1e-129 465.7 332 73.8
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 4.1e-129 465.3 330 73.3
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 4.1e-129 465.3 318 78.3
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 5.3e-129 464.9 365 69.3
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 6.9e-129 464.5 330 73.6
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 2.6e-128 462.6 337 72.7
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 4.5e-128 461.8 414 64.5
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 5.9e-128 461.5 358 70.1
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 1.0e-127 460.7 332 73.8
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 1.0e-127 460.7 332 73.8
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 1.0e-127 460.7 364 69.8
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 1.7e-127 459.9 337 72.7
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 2.2e-127 459.5 339 72.3
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 3.8e-127 458.8 332 73.5
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 5.0e-127 458.4 336 72.9
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 8.5e-127 457.6 334 71.6
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.1e-126 457.2 298 79.2
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 1.1e-126 457.2 334 74.6
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.4e-126 456.8 346 70.8
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 2.5e-126 456.1 334 74.3
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 4.6e-125 451.8 370 68.1
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 3.9e-124 448.7 330 71.8
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 1.1e-123 447.2 311 74.0
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 1.8e-121 439.9 318 73.3
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 5.3e-121 438.3 310 74.2
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 5.3e-121 438.3 366 66.4
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 4.5e-120 435.3 353 66.0
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 6.5e-119 431.4 308 73.1
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 2.3e-116 422.9 252 86.1
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 2.3e-116 422.9 321 72.6
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.6e-115 419.5 333 70.3
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 1.3e-114 417.2 278 77.3
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 4.1e-113 412.1 277 76.2
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 2.0e-112 409.8 324 65.4
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 3.4e-112 409.1 281 75.8
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 5.0e-111 405.2 297 71.4
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 3.2e-110 402.5 341 62.8
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 2.7e-109 399.4 334 62.9
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 4.8e-106 388.7 305 68.9
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 2.6e-104 382.9 274 72.6
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 5.2e-100 368.6 300 64.0
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 6.7e-100 368.2 300 65.7
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 7.5e-99 364.8 248 72.6
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.3e-98 361.7 219 84.5
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 9.1e-97 357.8 311 59.8
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 3.2e-94 349.4 214 82.7
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 7.2e-94 348.2 247 77.3
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 1.6e-88 330.5 205 82.0
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 2.0e-88 330.1 326 53.4
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 1.1e-86 324.3 231 74.0
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 6.3e-82 308.5 284 57.7
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 8.0e-77 291.6 169 87.6
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 8.9e-76 288.1 206 71.8
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 1.2e-75 287.7 199 75.9
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 2.8e-69 266.5 199 72.4
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 8.1e-61 238.4 310 43.5
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.0e-55 219.9 144 77.8
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 3.3e-46 189.9 140 71.4
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 1.7e-42 177.6 278 40.6
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 3.1e-36 156.8 104 76.0
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 2.3e-31 140.6 99 75.8
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 6.2e-29 132.5 110 63.6
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 2.6e-27 127.1 224 37.9
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.5e-27 126.3 246 38.2
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 4.2e-25 119.8 86 69.8
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 1.6e-24 117.9 79 73.4
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.1e-20 103.6 118 55.1
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.3e-20 102.8 61 83.6
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.3e-20 102.8 62 83.9
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 6.9e-20 102.4 99 51.5
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 9.0e-20 102.1 62 85.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 1.5e-19 101.3 81 58.0
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.0e-19 100.9 62 85.5
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 8.4e-18 95.5 92 57.6
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 1.1e-17 95.1 106 48.1
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.6e-16 91.3 56 85.7
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.0e-16 89.4 55 85.5
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 6.9e-12 75.9 46 76.1
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 8.5e-10 68.9 45 71.1
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 5.5e-09 66.2 43 72.1
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 9.3e-09 65.5 72 50.0
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 2.1e-08 64.3 35 85.7
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 7.9e-08 62.4 39 79.5
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 1.9e-06 57.8 123 35.8
Rhsim07G0166700 Rhododendron simsii HOM05D005156 ORTHO05D050672 4.3e-06 56.6 69 46.4


User provided reference genes

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