Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 0.0e+00 1134.4 564 100.0
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 8.4e-225 783.9 540 76.3
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.2e-194 683.7 526 67.1
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 1.7e-169 600.1 574 55.9
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.1e-150 537.7 542 56.6
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 8.1e-135 485.0 542 50.9
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.0e-129 466.5 572 49.7
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 5.1e-129 465.7 561 49.2
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.1e-126 458.0 547 49.2
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 1.1e-123 448.0 541 48.2
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 6.6e-121 438.7 540 48.5
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 6.6e-121 438.7 540 48.5
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 7.6e-117 425.2 536 48.3
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 7.6e-117 425.2 643 42.5
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 3.5e-114 416.4 498 50.4
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 5.1e-113 412.5 545 47.0
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.5e-112 411.0 542 46.3
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 4.3e-112 409.5 511 48.3
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 7.4e-112 408.7 545 47.3
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 1.8e-110 404.1 546 45.1
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 2.6e-109 400.2 546 46.0
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 5.5e-107 392.5 540 45.9
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 5.1e-105 386.0 549 44.1
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 1.1e-104 384.8 565 43.9
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.9e-100 370.2 522 45.2
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.1e-99 368.2 523 44.6
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 4.2e-99 366.3 523 44.7
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 9.3e-99 365.2 549 42.6
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 2.1e-98 364.0 542 41.5
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 4.6e-98 362.8 502 46.2
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-97 361.3 632 39.6
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 1.8e-97 360.9 539 40.6
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 1.5e-96 357.8 453 46.6
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 3.3e-96 356.7 539 40.6
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.7e-96 355.9 690 37.5
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 7.4e-96 355.5 479 45.3
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 9.7e-96 355.1 484 46.7
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.8e-95 352.8 632 38.9
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 8.2e-95 352.1 511 42.5
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.8e-94 350.9 516 42.6
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 2.4e-94 350.5 524 44.1
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.3e-94 349.4 642 38.9
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 9.0e-94 348.6 457 46.4
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.6e-93 347.1 540 40.9
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 4.5e-93 346.3 544 40.3
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 7.7e-93 345.5 483 42.4
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.0e-92 345.1 498 43.0
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 8.5e-92 342.0 330 53.9
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 8.5e-92 342.0 543 40.3
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 1.4e-91 341.3 572 39.7
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.5e-91 339.3 546 41.2
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 1.2e-90 338.2 346 52.3
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 2.1e-90 337.4 540 40.2
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 6.1e-90 335.9 527 41.4
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.8e-89 334.3 331 53.8
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.8e-89 334.3 518 42.9
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 8.8e-89 332.0 543 41.4
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.1e-88 331.6 494 44.3
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 1.3e-87 328.2 542 39.9
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.7e-87 327.8 489 42.9
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 8.2e-87 325.5 538 39.4
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 1.2e-85 321.6 542 39.7
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 2.0e-85 320.9 542 38.7
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 4.5e-85 319.7 508 41.9
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 7.7e-85 318.9 646 37.6
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 1.0e-84 318.5 500 42.0
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.3e-84 318.2 552 39.3
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 1.7e-84 317.8 493 42.8
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 3.8e-84 316.6 558 38.4
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.5e-83 313.9 451 45.7
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 7.2e-83 312.4 550 37.6
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.2e-82 311.6 534 37.5
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 2.7e-82 310.5 537 35.9
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 6.1e-82 309.3 549 41.2
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 3.0e-81 307.0 422 43.6
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 3.3e-80 303.5 489 42.9
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 4.4e-80 303.1 538 38.3
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 4.8e-79 299.7 527 41.7
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 6.3e-79 299.3 543 40.3
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 5.3e-78 296.2 309 49.8
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 2.6e-77 293.9 307 48.5
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 5.9e-77 292.7 507 35.9
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 7.7e-77 292.4 301 48.5
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 2.2e-76 290.8 342 47.1
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 2.5e-75 287.3 487 39.4
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 3.2e-75 287.0 506 38.7
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 4.2e-75 286.6 295 51.2
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 5.5e-75 286.2 469 39.2
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 2.1e-74 284.3 357 44.3
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 3.3e-72 276.9 469 38.2
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 2.8e-71 273.9 522 37.0
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 7.0e-70 269.2 326 45.7
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 3.5e-69 266.9 317 46.1
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 3.5e-69 266.9 350 43.4
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 1.5e-67 261.5 339 42.5
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 2.5e-67 260.8 519 36.0
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 5.5e-67 259.6 302 47.7
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.0e-65 253.8 518 36.3
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 6.3e-63 246.1 564 34.2
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 2.0e-61 241.1 516 34.1
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.7e-60 238.0 311 42.8
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 2.9e-60 237.3 308 42.5
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 8.5e-60 235.7 321 43.9
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.5e-59 234.2 577 33.6
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.2e-58 231.9 221 51.1
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.2e-58 231.9 305 41.6
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 1.2e-56 225.3 285 44.2
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.3e-55 221.9 222 49.5
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.6e-53 214.9 295 40.0
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 7.7e-53 212.6 325 42.5
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 5.0e-52 209.9 138 68.1
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 3.3e-43 180.6 533 32.3
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 9.5e-43 179.1 325 36.3
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 8.0e-42 176.0 355 35.2
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 1.8e-41 174.9 231 42.0
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 3.1e-41 174.1 168 50.6
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 4.0e-41 173.7 222 42.8
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 6.8e-41 172.9 231 41.6
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 4.4e-40 170.2 237 40.5
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 4.4e-40 170.2 275 39.3
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 9.8e-40 169.1 201 45.8
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 1.3e-39 168.7 232 40.1
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 1.3e-39 168.7 232 40.1
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 1.2e-37 162.2 322 36.0
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 2.0e-37 161.4 325 36.3
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.7e-37 161.0 342 35.1
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 3.5e-37 160.6 256 37.9
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 3.5e-37 160.6 256 37.9
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 3.5e-37 160.6 256 37.9
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 7.8e-37 159.5 456 31.4
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 3.0e-36 157.5 246 40.7
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 6.2e-34 149.8 295 36.9
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.0e-33 147.1 279 33.3
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 3.7e-31 140.6 337 34.4
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 3.7e-31 140.6 87 66.7
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 4.9e-31 140.2 97 66.0
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 2.7e-29 134.4 260 32.7
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 3.5e-29 134.0 283 30.7
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 3.9e-28 130.6 258 33.3
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 2.5e-27 127.9 104 58.7
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 3.6e-26 124.0 131 51.1
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.0e-24 118.2 360 27.2
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 3.4e-24 117.5 172 40.7
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.1e-22 112.5 82 58.5
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 1.5e-19 102.1 384 30.7
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 5.6e-19 100.1 183 33.3
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 9.6e-19 99.4 174 34.5
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.6e-18 98.6 174 34.5
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 2.1e-18 98.2 156 40.4
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 8.1e-18 96.3 151 37.1
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.0e-17 94.0 174 35.1
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 9.3e-14 82.8 217 30.4
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 5.8e-08 63.5 83 41.0
Phvul.009G117400 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 2.4e-06 58.2 103 39.8


User provided reference genes

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