Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 2.3e-188 662.1 357 100.0
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 2.1e-149 532.7 360 80.0
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 2.7e-144 515.8 359 79.1
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 5.1e-143 511.5 345 80.9
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 7.4e-142 507.7 358 77.9
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.3e-141 506.9 314 86.9
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 1.6e-141 506.5 361 77.3
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 9.0e-140 500.7 363 78.5
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 9.0e-140 500.7 353 79.9
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.7e-138 496.5 361 76.5
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 2.2e-138 496.1 345 78.6
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 2.9e-138 495.7 367 75.5
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 2.9e-138 495.7 361 76.2
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 2.9e-138 495.7 342 79.5
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 3.8e-138 495.4 346 79.5
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 4.2e-137 491.9 342 78.9
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 4.6e-136 488.4 360 75.3
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 4.6e-136 488.4 354 77.4
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 3.9e-135 485.3 360 75.0
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 3.9e-135 485.3 325 81.5
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 5.1e-135 485.0 361 76.5
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 3.3e-134 482.3 361 74.0
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 4.3e-134 481.9 357 73.7
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 7.4e-134 481.1 359 73.8
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 3.7e-133 478.8 342 78.7
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 4.8e-133 478.4 342 78.7
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 4.8e-133 478.4 342 78.7
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 1.8e-132 476.5 341 77.1
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.8e-132 476.5 374 72.5
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.2e-131 473.8 348 75.9
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 2.0e-131 473.0 344 75.0
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 4.5e-131 471.9 342 77.8
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 4.5e-131 471.9 321 81.0
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 5.9e-131 471.5 339 75.8
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 7.6e-131 471.1 362 74.6
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 2.9e-130 469.2 341 75.7
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.0e-130 468.4 382 70.7
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 8.5e-130 467.6 360 72.8
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 8.7e-127 457.6 328 76.2
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 8.7e-127 457.6 354 72.0
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 1.1e-126 457.2 346 76.3
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.5e-126 456.8 263 92.4
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 2.5e-126 456.1 345 74.8
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 3.3e-126 455.7 356 72.5
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 4.3e-126 455.3 344 72.7
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 5.7e-126 454.9 354 71.8
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 5.7e-126 454.9 354 71.8
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.8e-125 452.6 353 72.8
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 3.7e-125 452.2 325 77.2
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 4.8e-125 451.8 267 90.3
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 4.8e-125 451.8 359 72.7
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 6.3e-125 451.4 353 72.5
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.1e-124 450.7 304 79.9
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.4e-124 450.3 344 74.4
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.4e-124 450.3 344 74.4
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.4e-124 450.3 358 72.3
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 2.4e-124 449.5 299 82.9
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 9.1e-124 447.6 266 89.8
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.4e-123 445.7 292 82.2
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 4.5e-123 445.3 359 70.5
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 5.9e-123 444.9 359 71.3
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 5.9e-123 444.9 362 69.9
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 1.3e-122 443.7 362 69.1
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 1.4e-121 440.3 337 76.0
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 4.2e-121 438.7 314 79.0
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 4.2e-121 438.7 291 81.4
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 7.2e-121 438.0 320 77.2
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 1.2e-120 437.2 328 75.9
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 2.1e-120 436.4 330 75.5
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 2.7e-120 436.0 343 72.9
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 3.6e-120 435.6 314 78.3
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 4.6e-120 435.3 335 72.5
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 6.1e-120 434.9 314 78.0
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 7.9e-120 434.5 314 78.0
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.4e-119 433.7 357 70.0
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 1.4e-119 433.7 313 78.3
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 2.3e-119 433.0 332 74.1
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 5.1e-119 431.8 303 79.9
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 1.1e-118 430.6 340 71.8
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 7.4e-118 427.9 327 76.5
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 9.7e-118 427.6 349 69.9
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 2.8e-117 426.0 339 72.6
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 4.8e-117 425.2 334 73.4
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.8e-116 423.3 282 80.5
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 1.5e-115 420.2 311 76.5
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 2.0e-115 419.9 287 79.1
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 5.9e-115 418.3 328 70.1
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 9.4e-113 411.0 327 71.6
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.4e-111 407.1 365 63.8
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 3.9e-111 405.6 302 74.5
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 4.4e-110 402.1 303 73.9
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 9.7e-110 401.0 290 76.6
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.3e-106 390.6 290 73.8
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.9e-105 386.7 302 71.2
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.2e-105 385.6 337 69.1
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 4.2e-105 385.6 389 62.5
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 1.0e-103 380.9 361 63.7
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.2e-102 377.5 259 77.2
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 9.7e-102 374.4 260 76.9
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.6e-99 367.1 223 86.5
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 2.7e-99 366.3 257 75.5
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 2.0e-94 350.1 359 61.6
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 2.6e-94 349.7 254 74.0
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 5.9e-91 338.6 195 91.3
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 1.5e-89 334.0 288 66.0
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 9.8e-86 321.2 240 75.0
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.1e-84 317.8 274 66.8
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.6e-83 313.9 301 63.1
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 2.9e-82 309.7 279 61.6
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.8e-76 290.4 247 67.6
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.5e-70 270.8 245 59.2
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 2.0e-70 270.4 264 57.6
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 7.5e-62 241.9 304 52.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 7.5e-62 241.9 230 63.9
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 3.2e-60 236.5 275 51.6
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 2.1e-59 233.8 169 75.1
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 5.6e-57 225.7 230 61.7
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.3e-49 199.5 135 80.0
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 6.9e-47 192.2 140 79.3
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.1e-40 170.6 98 91.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.2e-38 164.9 142 71.1
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.3e-37 161.4 204 55.9
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.7e-35 153.7 114 73.7
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 6.0e-35 152.5 93 87.1
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.8e-32 143.7 159 56.0
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 8.1e-32 142.1 159 55.3
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.6e-19 101.3 80 68.8
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 3.3e-17 93.6 96 57.3
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 5.3e-15 86.3 60 73.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.4e-12 78.2 232 32.3
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 1.3e-10 71.6 47 78.7
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.5e-06 56.6 29 100.0
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 7.7e-06 55.8 31 90.3


User provided reference genes

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