Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.6e-236 821.6 407 100.0
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 2.8e-153 545.8 334 79.3
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.8e-153 545.8 301 88.4
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 6.2e-153 544.7 318 83.0
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 4.0e-152 542.0 301 86.7
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 4.0e-152 542.0 360 76.1
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.2e-151 540.4 361 75.3
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.2e-151 540.4 361 75.6
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 3.4e-151 538.9 318 81.8
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 4.4e-151 538.5 282 91.5
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 4.4e-151 538.5 324 82.4
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 5.8e-151 538.1 282 91.1
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 3.8e-150 535.4 318 81.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 3.8e-150 535.4 324 81.8
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 6.4e-150 534.6 318 81.1
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 8.4e-150 534.3 361 72.6
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 8.4e-150 534.3 337 77.4
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 8.4e-150 534.3 318 81.4
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.1e-149 533.9 318 81.1
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-149 533.9 337 77.4
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.4e-149 533.5 318 81.1
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.9e-149 533.1 318 81.1
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 2.4e-149 532.7 318 81.1
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 2.4e-149 532.7 282 90.1
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.4e-149 532.7 318 81.4
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.4e-149 532.7 361 74.0
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 2.4e-149 532.7 282 90.4
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 3.2e-149 532.3 282 89.7
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 4.2e-149 531.9 318 80.8
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.2e-149 531.9 318 81.1
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 4.2e-149 531.9 298 85.6
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 4.2e-149 531.9 282 89.4
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 5.4e-149 531.6 325 81.2
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 5.4e-149 531.6 318 80.5
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 5.4e-149 531.6 282 89.4
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 5.4e-149 531.6 318 80.5
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.1e-149 531.2 360 75.3
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 7.1e-149 531.2 318 81.1
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 9.3e-149 530.8 282 89.0
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.2e-148 530.4 318 80.5
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.2e-148 530.4 318 80.5
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.2e-148 530.4 318 80.5
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.6e-148 530.0 318 80.5
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.6e-148 530.0 318 80.2
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.6e-148 530.0 318 83.3
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-148 529.6 318 80.8
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.1e-148 529.6 318 80.8
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.1e-148 529.6 298 85.2
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 2.7e-148 529.3 282 88.3
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 4.6e-148 528.5 282 89.0
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 6.0e-148 528.1 282 88.7
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 7.8e-148 527.7 282 88.3
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.0e-147 527.3 361 73.4
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.3e-147 526.9 378 71.7
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.3e-147 526.9 325 80.6
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.7e-147 526.6 282 89.0
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 1.7e-147 526.6 334 76.6
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.3e-147 526.2 298 84.6
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.3e-147 526.2 282 88.3
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 2.3e-147 526.2 282 88.3
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.3e-147 526.2 282 88.3
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 3.9e-147 525.4 312 82.4
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 5.1e-147 525.0 318 79.9
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 5.1e-147 525.0 361 74.0
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 6.6e-147 524.6 282 87.9
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 8.7e-147 524.2 315 81.3
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 8.7e-147 524.2 325 79.4
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.1e-146 523.9 282 88.3
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.1e-146 523.9 282 88.3
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.1e-146 523.9 325 79.7
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 1.9e-146 523.1 282 87.6
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.9e-146 523.1 376 72.1
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.5e-146 522.7 318 79.6
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 3.3e-146 522.3 318 79.2
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 5.6e-146 521.5 318 79.2
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 7.3e-146 521.2 301 82.7
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 7.3e-146 521.2 360 73.1
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 7.3e-146 521.2 403 68.0
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 9.6e-146 520.8 318 79.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 9.6e-146 520.8 282 87.9
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 1.3e-145 520.4 318 78.6
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.6e-145 520.0 330 77.9
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.6e-145 520.0 403 67.7
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.1e-145 519.6 282 86.9
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.1e-145 519.6 306 82.4
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 6.2e-145 518.1 345 74.5
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 6.2e-145 518.1 345 74.5
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 6.2e-145 518.1 282 86.9
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 6.2e-145 518.1 324 78.1
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 2.4e-144 516.2 282 85.5
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 2.4e-144 516.2 328 77.4
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 2.4e-144 516.2 328 77.4
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.4e-144 516.2 328 76.8
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 2.4e-144 516.2 337 74.5
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.4e-144 516.2 324 77.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 4.0e-144 515.4 324 77.5
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 5.3e-144 515.0 345 74.2
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.3e-144 515.0 318 77.4
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 6.9e-144 514.6 279 87.8
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 9.0e-144 514.2 287 85.0
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.5e-143 513.5 324 77.2
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.5e-143 513.5 279 88.2
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.5e-143 513.5 360 71.7
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.6e-143 512.7 345 73.9
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 2.6e-143 512.7 282 85.1
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.4e-143 512.3 324 76.9
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 4.5e-143 511.9 276 87.3
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 2.9e-142 509.2 276 86.6
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 2.9e-142 509.2 279 86.7
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 8.4e-142 507.7 325 78.2
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.1e-141 507.3 315 79.0
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.9e-141 506.5 325 77.2
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.4e-141 506.1 364 69.0
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 5.4e-141 505.0 282 85.1
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 7.1e-141 504.6 360 70.3
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 7.1e-141 504.6 337 73.0
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.1e-141 504.6 385 67.5
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.2e-140 503.8 337 72.7
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.2e-140 503.8 361 70.9
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.9e-140 501.1 308 79.2
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 6.2e-137 491.5 318 74.2
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 8.1e-137 491.1 315 74.9
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.8e-136 490.0 282 81.6
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.1e-133 480.7 453 57.2
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.1e-132 476.5 347 70.3
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 3.5e-132 475.7 358 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 4.8e-129 465.3 279 77.8
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 2.4e-128 463.0 337 65.0
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.0e-126 457.6 245 89.4
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.2e-126 456.4 315 68.3
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 8.4e-126 454.5 315 68.6
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 7.1e-125 451.4 279 75.6
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 9.3e-125 451.1 251 85.7
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.8e-115 417.9 287 73.9
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 4.1e-112 409.1 325 67.4
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 5.3e-104 382.1 210 85.2
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 2.9e-102 376.3 306 59.8
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 4.5e-95 352.4 294 60.5
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.7e-94 350.5 193 85.5
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.2e-92 344.4 183 87.4
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 8.0e-92 341.7 281 63.3
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.8e-88 330.5 281 58.0
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.2e-82 311.2 194 75.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.9e-57 226.9 139 82.7
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 3.5e-55 219.9 115 91.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 7.5e-50 202.2 310 41.0
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.1e-48 198.4 330 39.4
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 4.3e-37 159.8 100 78.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 2.6e-34 150.6 100 73.0
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 5.6e-29 132.9 123 59.3
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.3e-21 107.1 58 81.0
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 7.4e-21 105.9 62 75.8
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 9.6e-21 105.5 128 47.7
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 9.6e-21 105.5 61 77.0
Peaxi162Scf00017g02640 Petunia axillaris HOM05D006894 ORTHO05D008724 4.2e-08 63.5 248 24.6
Peaxi162Scf00011g00531 Petunia axillaris HOM05D006894 ORTHO05D008724 1.8e-06 58.2 234 23.9


User provided reference genes

Program Settings