Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 0.0e+00 1446.0 839 100.0
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 1.1e-212 744.2 951 55.6
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 1.1e-185 654.4 928 49.6
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 9.7e-185 651.4 892 50.7
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 9.1e-183 644.8 916 51.9
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 3.4e-182 642.9 894 52.7
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.7e-181 640.6 700 57.0
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 3.8e-181 639.4 928 52.6
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 8.2e-176 621.7 957 49.0
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 2.6e-174 616.7 935 52.2
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 3.6e-171 606.3 979 45.1
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 6.1e-171 605.5 958 48.4
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 6.7e-170 602.1 658 57.1
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 1.3e-165 587.8 920 48.9
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 2.9e-165 586.6 949 47.5
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 4.0e-162 576.2 949 49.2
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 6.8e-162 575.5 686 53.5
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 1.7e-160 570.9 668 54.0
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 1.8e-159 567.4 709 53.5
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 9.1e-159 565.1 963 46.3
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.9e-156 557.4 687 54.0
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 5.7e-153 545.8 606 55.6
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 4.9e-152 542.7 672 52.4
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 4.5e-150 536.2 856 48.8
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 1.0e-149 535.0 667 52.8
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.3e-149 534.6 969 47.5
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 5.0e-149 532.7 684 53.2
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 6.6e-149 532.3 959 44.3
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 8.6e-149 531.9 703 49.6
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.5e-148 531.2 682 53.1
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 9.5e-148 528.5 786 45.9
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 4.0e-146 523.1 693 50.4
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 1.2e-145 521.5 666 51.1
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 9.8e-145 518.5 704 48.6
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 3.7e-144 516.5 940 42.8
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 4.9e-144 516.2 747 52.5
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 6.4e-144 515.8 658 50.5
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 6.4e-144 515.8 664 50.9
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 4.1e-143 513.1 932 42.9
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 7.8e-142 508.8 694 47.6
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 5.0e-141 506.1 546 57.9
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 9.5e-140 501.9 705 48.2
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 2.8e-139 500.4 701 47.4
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 6.2e-139 499.2 701 47.4
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 6.8e-138 495.7 683 47.1
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 1.2e-137 495.0 544 54.6
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 7.5e-137 492.3 649 51.3
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 7.0e-135 485.7 612 51.6
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 1.2e-134 485.0 659 47.6
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 6.6e-133 479.2 694 44.8
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 9.5e-132 475.3 654 47.2
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 6.2e-131 472.6 949 43.1
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 1.4e-130 471.5 531 55.4
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 2.3e-130 470.7 710 44.5
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 3.4e-129 466.8 808 46.0
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 4.9e-128 463.0 661 48.1
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 2.7e-126 457.2 888 44.1
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 3.5e-126 456.8 537 54.7
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 4.3e-124 449.9 604 48.2
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 2.1e-123 447.6 774 48.7
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 2.1e-123 447.6 797 48.7
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 5.2e-122 443.0 539 54.2
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 1.9e-119 434.5 565 50.1
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 3.5e-118 430.3 813 44.4
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 4.6e-118 429.9 729 44.4
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 4.0e-114 416.8 683 43.2
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 2.0e-113 414.5 656 44.2
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 2.9e-112 410.6 644 44.3
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 3.5e-110 403.7 689 42.1
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.5e-108 398.3 681 42.6
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 1.5e-108 398.3 668 43.6
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 9.6e-108 395.6 706 39.7
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.3e-107 395.2 498 51.0
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 2.1e-107 394.4 657 43.8
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 4.8e-107 393.3 665 43.3
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 4.8e-107 393.3 663 43.4
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 4.8e-107 393.3 513 49.3
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 6.9e-106 389.4 555 47.7
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 1.2e-105 388.7 799 39.8
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 3.4e-105 387.1 665 42.6
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 9.9e-105 385.6 684 41.7
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 5.4e-103 379.8 500 50.4
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 1.8e-101 374.8 499 50.3
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 6.7e-101 372.9 469 52.0
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 1.2e-97 362.1 559 55.3
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.3e-92 344.0 365 56.7
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 6.2e-91 339.7 733 37.7
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 9.0e-90 335.9 366 56.3
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.2e-89 335.5 556 41.9
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 4.6e-86 323.6 391 52.2
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 3.9e-85 320.5 726 36.5
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 6.3e-83 313.2 746 39.7
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 2.1e-78 298.1 346 55.8
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 5.1e-77 293.5 810 32.6
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 3.3e-76 290.8 464 45.7
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 2.8e-75 287.7 418 47.1
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 1.4e-74 285.4 489 42.5
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 1.2e-73 282.3 510 42.5
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 2.1e-70 271.6 705 34.8
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 1.5e-55 222.2 449 40.1
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 2.1e-54 218.4 384 42.7
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 7.2e-47 193.4 526 33.7
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 1.2e-41 176.0 151 61.6
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 4.0e-37 161.0 150 58.0
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 7.8e-33 146.7 157 55.4
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 6.6e-32 143.7 149 55.0
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 3.6e-30 137.9 149 51.7
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.5e-28 132.5 151 52.3
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 7.5e-28 130.2 152 53.3
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.2e-25 122.9 150 51.3
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 2.7e-25 121.7 169 48.5
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 8.6e-24 116.7 143 50.3
Nn6g32350 Nelumbo nucifera HOM05D006512 ORTHO05D008027 3.5e-17 94.7 181 43.1
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-09 67.4 135 34.8
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 1.3e-08 66.2 66 47.0
PRCOL_00002654 Prasinoderma coloniale HOM05D002594 ORTHO05D003499 1.9e-07 62.4 55 43.6
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 1.9e-07 62.4 98 31.6
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 1.9e-07 62.4 174 31.6
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 1.6e-06 59.3 101 30.7
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 2.1e-06 58.9 120 28.3
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 2.1e-06 58.9 159 27.0
Lalb_Chr02g0145451 Lupinus albus HOM05D002594 ORTHO05D003499 2.1e-06 58.9 159 27.0
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 2.8e-06 58.5 72 37.5
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 4.7e-06 57.8 78 35.9
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 4.7e-06 57.8 80 33.8
FAN12G4354 Fragaria x ananassa HOM05D002594 ORTHO05D003499 6.2e-06 57.4 78 33.3
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 6.2e-06 57.4 53 43.4
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 8.1e-06 57.0 53 41.5
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 8.1e-06 57.0 93 32.3
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 8.1e-06 57.0 73 37.0
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 8.1e-06 57.0 111 27.9
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 8.1e-06 57.0 53 41.5


User provided reference genes

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