Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0145 Trochodendron aralioides HOM05D000999 ORTHO05D001196 1.7e-120 436.0 225 100.0
TAR383G0256 Trochodendron aralioides HOM05D000999 ORTHO05D000961 1.8e-24 117.1 67 85.1
Aqoxy7G01819 Aquilegia oxysepala HOM05D000999 ORTHO05D000961 3.7e-22 109.4 67 79.1
Cfa003284 Carpinus fangiana HOM05D000999 ORTHO05D000961 3.7e-22 109.4 67 77.6
Dinv41582 Davidia involucrata HOM05D000999 ORTHO05D000961 2.4e-21 106.7 67 74.6
Haze_25689 Corylus avellana HOM05D000999 ORTHO05D000961 5.3e-21 105.5 67 74.6
QL02p085919 Quercus lobata HOM05D000999 ORTHO05D000961 1.2e-20 104.4 67 73.1
GSVIVG01015420001 Vitis vinifera HOM05D000999 ORTHO05D000961 1.0e-19 101.3 68 76.5
CSS0036744 Camellia sinensis var. sinensis HOM05D000999 ORTHO05D000961 2.9e-19 99.8 67 70.1
Actinidia20343 Actinidia chinensis HOM05D000999 ORTHO05D000961 3.8e-19 99.4 68 73.5
TAR636G2401 Trochodendron aralioides HOM05D000809 ORTHO05D001196 5.0e-19 99.0 61 83.6
TAR624G0463 Trochodendron aralioides HOM05D000809 ORTHO05D007733 8.5e-19 98.2 61 83.6
MBI04_g37462_MAGBIO Magnolia biondii HOM05D000999 ORTHO05D000961 9.4e-18 94.7 67 65.7
MBI06_g41726_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 2.7e-17 93.2 67 64.2
MBI15_g05486_MAGBIO Magnolia biondii HOM05D002407 ORTHO05D002476 2.7e-17 93.2 67 64.2
MBI01_g16639_MAGBIO Magnolia biondii HOM05D000999 ORTHO05D000961 3.6e-17 92.8 68 64.7
Ciclev10009855m.g Citrus clementina HOM05D000999 ORTHO05D000961 4.7e-17 92.4 68 63.2
MBI15_g01161_MAGBIO Magnolia biondii HOM05D003464 ORTHO05D003170 6.1e-17 92.0 82 54.9
MBI04_g21508_MAGBIO Magnolia biondii HOM05D000999 ORTHO05D000961 1.0e-16 91.3 68 66.2
CiPaw.04G166700 Carya illinoinensis HOM05D000999 ORTHO05D000961 1.4e-16 90.9 67 68.7
Rhsim01G0093900 Rhododendron simsii HOM05D000999 ORTHO05D000961 1.8e-16 90.5 68 69.1
CiPaw.03G234500 Carya illinoinensis HOM05D000999 ORTHO05D000961 2.3e-16 90.1 67 64.2
Rhsim01G0092100 Rhododendron simsii HOM05D000999 ORTHO05D000961 3.9e-16 89.4 68 66.2
Rhsim01G0092800 Rhododendron simsii HOM05D000999 ORTHO05D000961 3.9e-16 89.4 68 67.6
Duzib150G0517 Durio zibethinus HOM05D000999 ORTHO05D000961 5.1e-16 89.0 67 67.2
PSO063G3180 Papaver somniferum HOM05D000999 ORTHO05D000961 6.7e-16 88.6 71 67.6
PSO782G4387 Papaver somniferum HOM05D000999 ORTHO05D000961 6.7e-16 88.6 71 67.6
Dinv41580 Davidia involucrata HOM05D000809 ORTHO05D001196 1.1e-15 87.8 61 73.8
vmacro20665 Vaccinium macrocarpon HOM05D000809 ORTHO05D001196 1.1e-15 87.8 61 72.1
Manes.03G068632 Manihot esculenta HOM05D000999 ORTHO05D000961 1.5e-15 87.4 69 65.2
Manes.03G069148 Manihot esculenta HOM05D000999 ORTHO05D000961 1.5e-15 87.4 69 65.2
Prupe.7G227800 Prunus persica HOM05D000999 ORTHO05D000961 1.5e-15 87.4 68 64.7
FvH4_1g05260 Fragaria vesca HOM05D000999 ORTHO05D000961 2.6e-15 86.7 68 66.2
FAN19G1847 Fragaria x ananassa HOM05D000999 ORTHO05D000961 2.6e-15 86.7 68 66.2
Duzib187G2003 Durio zibethinus HOM05D000999 ORTHO05D000961 4.4e-15 85.9 67 65.7
FAN23G2781 Fragaria x ananassa HOM05D000999 ORTHO05D000961 4.4e-15 85.9 68 64.7
Glyma.07G088600 Glycine max HOM05D000999 ORTHO05D000961 4.4e-15 85.9 67 62.7
Rhsim01G0091900 Rhododendron simsii HOM05D000809 ORTHO05D001196 4.4e-15 85.9 61 72.1
Gohir.A05G021700 Gossypium hirsutum HOM05D000999 ORTHO05D000961 5.7e-15 85.5 67 64.2
Gohir.D05G023200 Gossypium hirsutum HOM05D000999 ORTHO05D000961 5.7e-15 85.5 67 64.2
Gorai.009G023400 Gossypium raimondii HOM05D000999 ORTHO05D000961 5.7e-15 85.5 67 64.2
Potri.018G076400 Populus trichocarpa HOM05D000999 ORTHO05D000961 5.7e-15 85.5 70 64.3
Potri.006G158676 Populus trichocarpa HOM05D000809 ORTHO05D001196 7.4e-15 85.1 61 73.8
Thecc.09G114000 Theobroma cacao HOM05D000809 ORTHO05D001196 7.4e-15 85.1 61 72.1
vmacro20663 Vaccinium macrocarpon HOM05D000999 ORTHO05D000961 7.4e-15 85.1 70 68.6
arahy.Tifrunner.gnm1.ann1.9BP30P Arachis hypogaea HOM05D000999 ORTHO05D000961 9.7e-15 84.7 68 63.2
arahy.Tifrunner.gnm1.ann1.T4CT7H Arachis hypogaea HOM05D000999 ORTHO05D000961 9.7e-15 84.7 68 63.2
RcHm_v2.0_Chr2g0090981 Rosa chinensis HOM05D000999 ORTHO05D000961 9.7e-15 84.7 68 66.2
Atru.chr7.1310 Acer truncatum HOM05D000999 ORTHO05D000961 1.3e-14 84.3 68 67.6
Duzib168G1951 Durio zibethinus HOM05D000809 ORTHO05D001196 1.3e-14 84.3 63 69.8
COL.COLO4_34885 Corchorus olitorius HOM05D000999 ORTHO05D000961 2.2e-14 83.6 68 66.2
Hma1.2p1_0018F.1_g013220 Hydrangea macrophylla HOM05D000999 ORTHO05D000961 2.2e-14 83.6 67 62.7
Thecc.09G113700 Theobroma cacao HOM05D000999 ORTHO05D000961 2.8e-14 83.2 68 66.2
COL.COLO4_34883 Corchorus olitorius HOM05D000809 ORTHO05D007733 3.7e-14 82.8 70 65.7
Glyma.05G232300 Glycine max HOM05D000999 ORTHO05D000961 3.7e-14 82.8 67 59.7
Ciclev10007575m.g Citrus clementina HOM05D000809 ORTHO05D001196 4.8e-14 82.4 64 68.8
FAN28G0318 Fragaria x ananassa HOM05D000999 ORTHO05D000961 6.3e-14 82.0 68 67.6
Potri.018G076500 Populus trichocarpa HOM05D000809 ORTHO05D001196 8.2e-14 81.6 61 70.5
Atru.chr7.1305 Acer truncatum HOM05D000809 ORTHO05D001196 1.1e-13 81.3 61 70.5
FAN26G1357 Fragaria x ananassa HOM05D000999 ORTHO05D000961 1.1e-13 81.3 68 64.7
FAN26G1374 Fragaria x ananassa HOM05D000999 ORTHO05D000961 1.1e-13 81.3 68 64.7
Gohir.A05G021500 Gossypium hirsutum HOM05D000809 ORTHO05D001196 1.1e-13 81.3 61 68.9
Nn8g39254 Nelumbo nucifera HOM05D000999 ORTHO05D000961 1.1e-13 81.3 71 60.6
TWI63G0537 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 1.1e-13 81.3 61 70.5
Nn2g11809 Nelumbo nucifera HOM05D000809 ORTHO05D001196 1.4e-13 80.9 60 70.0
Prupe.7G227600 Prunus persica HOM05D000809 ORTHO05D007733 1.4e-13 80.9 61 68.9
Phvul.004G161300 Phaseolus vulgaris HOM05D000999 ORTHO05D000961 1.8e-13 80.5 68 61.8
Glyma.09G188200 Glycine max HOM05D000999 ORTHO05D000961 2.4e-13 80.1 67 59.7
Lj4g0026251 Lotus japonicus HOM05D000999 ORTHO05D000961 2.4e-13 80.1 67 58.2
Manes.16G070600 Manihot esculenta HOM05D000809 ORTHO05D001196 2.4e-13 80.1 61 68.9
QL02p085950 Quercus lobata HOM05D000809 ORTHO05D001196 2.4e-13 80.1 61 72.1
VMungo0464G1073 Vigna mungo HOM05D000999 ORTHO05D000961 2.4e-13 80.1 67 59.7
Glyma.07G089000 Glycine max HOM05D000809 ORTHO05D001196 3.1e-13 79.7 60 71.7
Phvul.002G314600 Phaseolus vulgaris HOM05D000999 ORTHO05D000961 3.1e-13 79.7 67 62.7
Gohir.D05G023000 Gossypium hirsutum HOM05D000809 ORTHO05D001196 4.1e-13 79.3 61 67.2
Gorai.009G023200 Gossypium raimondii HOM05D000809 ORTHO05D001196 4.1e-13 79.3 61 67.2
Haze_25687 Corylus avellana HOM05D000809 ORTHO05D001196 5.3e-13 79.0 61 70.5
Lalb_Chr05g0222671 Lupinus albus HOM05D000999 ORTHO05D000961 7.0e-13 78.6 68 58.8
MD02G1063000 Malus domestica HOM05D000999 ORTHO05D000961 7.0e-13 78.6 68 61.8
MD15G1188800 Malus domestica HOM05D000999 ORTHO05D000961 9.1e-13 78.2 68 60.3
MD15G1189100 Malus domestica HOM05D000809 ORTHO05D001196 1.2e-12 77.8 61 67.2
Cpa.g.sc23.127 Carica papaya HOM05D000999 ORTHO05D000961 1.6e-12 77.4 70 58.6
Glyma.08G039700 Glycine max HOM05D000999 ORTHO05D000961 1.6e-12 77.4 67 56.7
MD02G1056200 Malus domestica HOM05D000809 ORTHO05D001196 1.6e-12 77.4 60 68.3
Psat7g014080 Pisum sativum HOM05D000809 ORTHO05D001196 1.6e-12 77.4 61 68.9
TWI34G1328 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 1.6e-12 77.4 60 66.7
TPR.G31448 Trifolium pratense HOM05D000999 ORTHO05D000961 2.0e-12 77.0 67 58.2
FAN23G0415 Fragaria x ananassa HOM05D000809 ORTHO05D001196 2.6e-12 76.6 60 66.7
FAN26G2813 Fragaria x ananassa HOM05D000809 ORTHO05D007733 2.6e-12 76.6 60 66.7
FAN28G1747 Fragaria x ananassa HOM05D000809 ORTHO05D001196 2.6e-12 76.6 60 66.7
Hma1.2p1_0518F.1_g171330 Hydrangea macrophylla HOM05D000809 ORTHO05D001196 2.6e-12 76.6 60 66.7
Medtr6g086020 Medicago truncatula HOM05D000999 ORTHO05D000961 2.6e-12 76.6 67 56.7
Medtr8g103820 Medicago truncatula HOM05D000999 ORTHO05D000961 2.6e-12 76.6 68 60.3
CANSAT56G4528 Cannabis sativa HOM05D000999 ORTHO05D000961 3.5e-12 76.3 71 54.9
VMungo0464G1738 Vigna mungo HOM05D000809 ORTHO05D001196 3.5e-12 76.3 61 68.9
CSS0031088 Camellia sinensis var. sinensis HOM05D000809 ORTHO05D001196 4.5e-12 75.9 57 70.2
Lalb_Chr22g0352951 Lupinus albus HOM05D000999 ORTHO05D000961 4.5e-12 75.9 67 55.2
Peaxi162Scf00560g00514 Petunia axillaris HOM05D000999 ORTHO05D000961 4.5e-12 75.9 71 57.7
Dinv36607 Davidia involucrata HOM05D000809 ORTHO05D001196 5.9e-12 75.5 61 68.9
Gorai.001G003800 Gossypium raimondii HOM05D000999 ORTHO05D000961 5.9e-12 75.5 70 62.9
Manes.03G068900 Manihot esculenta HOM05D000809 ORTHO05D001196 5.9e-12 75.5 61 67.2
Phvul.004G161100 Phaseolus vulgaris HOM05D000809 ORTHO05D001196 7.7e-12 75.1 61 68.9
VMungo0251G0089 Vigna mungo HOM05D000999 ORTHO05D000961 1.3e-11 74.3 68 58.8
TPR.G21677 Trifolium pratense HOM05D004428 ORTHO05D006381 1.7e-11 73.9 60 63.3
TWI32G1189 Tripterygium wilfordii HOM05D000809 ORTHO05D001196 1.7e-11 73.9 57 68.4
DCAR_016078 Daucus carota HOM05D000999 ORTHO05D000961 2.9e-11 73.2 73 52.1
DCAR_031728 Daucus carota HOM05D000999 ORTHO05D000961 2.9e-11 73.2 73 52.1
Gohir.D07G004200 Gossypium hirsutum HOM05D000999 ORTHO05D000961 2.9e-11 73.2 70 61.4
Lj2g0015057 Lotus japonicus HOM05D000999 ORTHO05D000961 2.9e-11 73.2 67 53.7
Nn2g11807 Nelumbo nucifera HOM05D000999 ORTHO05D000961 3.8e-11 72.8 71 56.3
Ca_17346_v3 Cicer arietinum L. HOM05D000809 ORTHO05D001196 5.0e-11 72.4 55 67.3
Lalb_Chr16g0387991 Lupinus albus HOM05D000999 ORTHO05D000961 5.0e-11 72.4 67 58.2
Sabra18G0064800 Salix brachista HOM05D000999 ORTHO05D000961 5.0e-11 72.4 70 55.7
CsaV3_1G030750 Cucumis sativus L. HOM05D000999 ORTHO05D000961 6.5e-11 72.0 78 55.1
MELO3C025323.2 Cucumis melo HOM05D000999 ORTHO05D000961 1.1e-10 71.2 78 53.8
Cc06_g09390 Coffea canephora HOM05D000809 ORTHO05D001196 1.5e-10 70.9 61 57.4
Lj2g0007105 Lotus japonicus HOM05D000809 ORTHO05D001196 1.5e-10 70.9 61 63.9
TPR.G21710 Trifolium pratense HOM05D000809 ORTHO05D001196 1.9e-10 70.5 61 63.9
Gohir.A07G003700 Gossypium hirsutum HOM05D000999 ORTHO05D000961 2.5e-10 70.1 70 61.4
Cc06_g09440 Coffea canephora HOM05D000999 ORTHO05D000961 3.2e-10 69.7 71 56.3
DCAR_024063 Daucus carota HOM05D000809 ORTHO05D001196 3.2e-10 69.7 60 65.0
PGR142G0112 Punica granatum HOM05D000809 ORTHO05D001196 3.2e-10 69.7 66 62.1
VMungo0251G3045 Vigna mungo HOM05D000809 ORTHO05D001196 3.2e-10 69.7 65 60.0
arahy.Tifrunner.gnm1.ann1.JA81W4 Arachis hypogaea HOM05D000809 ORTHO05D001196 5.5e-10 68.9 52 67.3
arahy.Tifrunner.gnm1.ann1.KX0H5E Arachis hypogaea HOM05D000809 ORTHO05D001196 5.5e-10 68.9 52 67.3
ClCG06G010330 Citrullus lanatus HOM05D000999 ORTHO05D000961 5.5e-10 68.9 76 53.9
Psat1g039800 Pisum sativum HOM05D000999 ORTHO05D000961 7.2e-10 68.6 67 55.2
MELO3C004546.2 Cucumis melo HOM05D000809 ORTHO05D001196 1.2e-09 67.8 61 62.3
Glyma.05G232400 Glycine max HOM05D000809 ORTHO05D001196 1.6e-09 67.4 61 60.7
Sed0009087 Sechium edule HOM05D000999 ORTHO05D000961 1.6e-09 67.4 76 52.6
Eucgr.C01072 Eucalyptus grandis HOM05D000809 ORTHO05D001196 2.1e-09 67.0 60 58.3
Solyc12g006997.1 Solanum lycopersicum HOM05D000999 ORTHO05D000961 2.7e-09 66.6 76 50.0
Lalb_Chr09g0331131 Lupinus albus HOM05D000809 ORTHO05D001196 3.6e-09 66.2 60 58.3
Sc18g0001090 Simmondsia chinensis HOM05D000999 ORTHO05D000961 3.6e-09 66.2 73 43.8
Sopen12g002960 Solanum pennellii HOM05D000999 ORTHO05D000961 3.6e-09 66.2 78 48.7
PGSC0003DMG400000385 Solanum tuberosum HOM05D000999 ORTHO05D000961 3.6e-09 66.2 78 47.4
CsaV3_2G002420 Cucumis sativus L. HOM05D000809 ORTHO05D001196 1.0e-08 64.7 61 59.0
Eucgr.C03872 Eucalyptus grandis HOM05D000999 ORTHO05D000961 1.4e-08 64.3 69 52.2
Eucgr.C01069 Eucalyptus grandis HOM05D000999 ORTHO05D000961 1.8e-08 63.9 77 51.9
Eucgr.C04124 Eucalyptus grandis HOM05D000999 ORTHO05D000961 1.8e-08 63.9 69 52.2
Nitab4.5_0001672g0120 Nicotiana tabacum HOM05D000999 ORTHO05D000961 1.8e-08 63.9 73 54.8
EL10Ac8g18524 Beta vulgaris HOM05D000999 ORTHO05D000961 2.3e-08 63.5 72 44.4
Hund26171 Selenicereus undatus HOM05D000999 ORTHO05D000961 3.0e-08 63.2 77 41.6
Aqoxy7G01821 Aquilegia oxysepala HOM05D000809 ORTHO05D001196 5.2e-08 62.4 61 54.1
Os01g0719600 Oryza sativa ssp. japonica HOM05D000999 ORTHO05D000961 5.2e-08 62.4 67 46.3
Sed0018197 Sechium edule HOM05D000999 ORTHO05D000961 5.2e-08 62.4 74 52.7
Nitab4.5_0009945g0010 Nicotiana tabacum HOM05D000999 ORTHO05D000961 8.8e-08 61.6 72 54.2
Phvul.002G314700 Phaseolus vulgaris HOM05D000809 ORTHO05D001196 8.8e-08 61.6 61 59.0
PSO063G0277 Papaver somniferum HOM05D000809 ORTHO05D001196 1.1e-07 61.2 62 56.5
PSO782G3528 Papaver somniferum HOM05D000809 ORTHO05D001196 1.1e-07 61.2 62 56.5
THA.LOC104808751 Tarenaya hassleriana HOM05D000999 ORTHO05D000961 2.0e-07 60.5 69 49.3
CAN.G713.34 Capsicum annuum HOM05D000999 ORTHO05D000961 2.6e-07 60.1 78 47.4
Peaxi162Scf00546g00324 Petunia axillaris HOM05D000999 ORTHO05D000961 2.6e-07 60.1 72 45.8
AUR62011016 Chenopodium quinoa HOM05D000657 ORTHO05D007045 3.3e-07 59.7 69 40.6
AL3G39880 Arabidopsis lyrata HOM05D000999 ORTHO05D000961 4.4e-07 59.3 75 48.0
AUR62021527 Chenopodium quinoa HOM05D000999 ORTHO05D000961 4.4e-07 59.3 69 40.6
TWI34G1648 Tripterygium wilfordii HOM05D000999 ORTHO05D000961 4.4e-07 59.3 70 51.4
Hund09191 Selenicereus undatus HOM05D000999 ORTHO05D000961 5.7e-07 58.9 74 43.2
Carub.0003s2475 Capsella rubella HOM05D000999 ORTHO05D000961 1.7e-06 57.4 76 47.4
AT3G24450 Arabidopsis thaliana HOM05D000999 ORTHO05D000961 2.2e-06 57.0 74 47.3
Thhalv10002708m.g Eutrema salsugineum HOM05D000999 ORTHO05D000961 2.2e-06 57.0 76 46.1
CARHR100540 Cardamine hirsuta HOM05D000999 ORTHO05D000961 3.7e-06 56.2 75 46.7
TWI63G0007 Tripterygium wilfordii HOM05D000999 ORTHO05D000961 6.3e-06 55.5 72 45.8
BcaB03g14585 Brassica carinata HOM05D000999 ORTHO05D000961 8.2e-06 55.1 74 45.9
A03p43650 Brassica napus HOM05D000999 ORTHO05D000961 8.2e-06 55.1 74 47.3
BraA03t13502Z Brassica rapa HOM05D000999 ORTHO05D000961 8.2e-06 55.1 74 47.3
MBI04_g25409_MAGBIO Magnolia biondii HOM05D000999 ORTHO05D000961 8.2e-06 55.1 43 60.5


User provided reference genes

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