Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.2e-97 359.0 182 100.0
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.1e-84 315.8 182 89.0
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.2e-74 283.5 184 79.9
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 6.3e-73 277.7 182 78.6
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.4e-72 276.6 182 78.6
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 2.4e-72 275.8 182 78.6
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 7.7e-71 270.8 184 77.7
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 5.0e-70 268.1 186 75.3
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 1.5e-69 266.5 181 75.7
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 1.5e-69 266.5 181 75.7
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 1.9e-69 266.2 185 76.8
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 2.5e-69 265.8 183 75.4
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 2.5e-69 265.8 183 75.4
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 8.0e-68 260.8 184 76.6
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 8.0e-68 260.8 182 75.3
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 8.0e-68 260.8 182 75.3
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 1.0e-67 260.4 183 74.3
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.8e-67 259.6 184 72.8
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 2.3e-67 259.2 183 77.0
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 8.8e-67 257.3 182 73.6
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 1.2e-66 256.9 184 75.5
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.5e-66 256.5 182 74.2
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 1.5e-66 256.5 182 72.5
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 2.0e-66 256.1 188 72.3
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 3.4e-66 255.4 184 71.2
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 5.7e-66 254.6 188 72.9
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 2.8e-65 252.3 182 70.9
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 2.8e-65 252.3 182 73.6
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 1.1e-64 250.4 182 73.6
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.4e-64 250.0 183 71.0
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 3.1e-64 248.8 182 72.5
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 4.1e-64 248.4 182 72.0
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 5.4e-64 248.1 182 70.3
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 5.4e-64 248.1 183 72.7
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.2e-63 246.9 182 72.0
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.0e-63 246.1 182 72.0
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 5.9e-63 244.6 191 71.2
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 5.9e-63 244.6 182 70.3
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 7.7e-63 244.2 183 71.0
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 1.7e-62 243.0 182 70.9
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 1.7e-62 243.0 185 69.7
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 2.9e-62 242.3 159 74.8
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 3.8e-62 241.9 187 70.1
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 5.0e-62 241.5 186 69.4
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 6.6e-62 241.1 186 69.9
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 1.1e-61 240.4 186 68.8
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 1.5e-61 240.0 183 70.5
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.5e-61 239.2 162 72.2
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 2.5e-61 239.2 198 65.2
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 9.5e-61 237.3 183 71.0
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 9.5e-61 237.3 182 69.8
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.2e-60 236.9 179 69.3
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 1.6e-60 236.5 184 68.5
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.1e-60 236.1 171 71.9
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.1e-60 236.1 185 70.3
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 2.8e-60 235.7 184 71.2
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 4.7e-60 235.0 185 68.1
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 4.7e-60 235.0 186 68.3
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 6.1e-60 234.6 184 71.7
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 1.0e-59 233.8 171 72.5
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 1.0e-59 233.8 171 72.5
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.3e-59 232.6 184 68.5
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 2.3e-59 232.6 182 67.0
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 2.3e-59 232.6 181 69.6
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 2.3e-59 232.6 183 68.9
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 3.0e-59 232.3 181 66.3
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 5.2e-59 231.5 187 69.0
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-58 230.3 187 66.8
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.2e-58 230.3 135 81.5
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.5e-58 229.9 151 75.5
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.5e-58 229.9 176 70.5
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 2.0e-58 229.6 153 77.1
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 3.4e-58 228.8 182 66.5
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.4e-58 228.8 174 70.1
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 4.4e-58 228.4 183 68.9
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 1.3e-57 226.9 176 67.0
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 1.3e-57 226.9 176 67.0
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.7e-57 226.5 182 67.0
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 3.7e-57 225.3 172 66.9
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 3.7e-57 225.3 180 65.6
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 3.7e-57 225.3 180 65.6
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 3.7e-57 225.3 180 65.6
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 4.9e-57 224.9 179 65.9
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 4.9e-57 224.9 184 65.2
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 6.4e-57 224.6 176 65.9
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 6.4e-57 224.6 176 65.9
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.4e-57 224.6 222 58.6
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 8.3e-57 224.2 181 65.2
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 8.3e-57 224.2 165 68.5
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 8.3e-57 224.2 143 74.8
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 2.4e-56 222.6 176 66.5
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.2e-56 222.2 180 65.6
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 9.2e-56 220.7 182 64.3
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.2e-55 220.3 120 85.8
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.2e-55 220.3 181 64.1
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 1.2e-55 220.3 184 64.1
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.5e-55 218.8 191 64.4
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 1.0e-54 217.2 186 62.9
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.0e-54 217.2 182 65.9
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 1.7e-54 216.5 183 63.9
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 3.0e-54 215.7 185 64.3
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 8.6e-54 214.2 185 64.3
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 8.6e-54 214.2 185 64.9
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.9e-53 213.0 125 81.6
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 2.5e-53 212.6 183 66.1
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 3.3e-53 212.2 177 63.3
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 4.3e-53 211.8 183 63.4
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 7.3e-53 211.1 183 62.8
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.7e-52 208.4 298 45.3
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 8.0e-52 207.6 182 61.0
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.0e-51 207.2 180 62.2
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 1.4e-51 206.8 190 60.5
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.8e-51 206.5 143 70.6
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 8.9e-51 204.1 296 44.3
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.0e-50 203.0 176 61.9
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 4.4e-50 201.8 183 63.4
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 2.4e-48 196.1 143 69.2
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 7.8e-47 191.0 144 64.6
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 3.0e-46 189.1 153 65.4
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.5e-45 186.0 185 59.5
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 8.1e-44 181.0 216 53.7
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 5.2e-43 178.3 163 60.7
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 1.4e-40 170.2 123 66.7
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.5e-37 160.2 132 60.6
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 2.1e-36 156.4 171 49.7
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 3.4e-34 149.1 87 82.8
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.7e-33 146.7 87 81.6
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 2.2e-33 146.4 82 87.8
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 2.9e-33 146.0 82 87.8
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.4e-32 141.7 87 75.9
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 7.8e-31 137.9 177 48.6
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.3e-30 137.1 124 50.8
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.5e-29 133.7 96 69.8
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 8.9e-27 124.4 100 57.0
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 8.9e-27 124.4 82 75.6
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 1.2e-26 124.0 87 73.6
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.2e-23 114.0 154 42.9
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.4e-16 90.5 90 60.0
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 1.9e-16 90.1 54 77.8
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 9.3e-16 87.8 89 55.1
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.1e-15 86.7 106 48.1
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 3.9e-14 82.4 54 72.2
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 6.9e-11 71.6 62 61.3
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 7.6e-10 68.2 63 46.0
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 3.2e-08 62.8 98 43.9
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 1.6e-07 60.5 98 43.9
FAN16G2982 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.3e-06 57.4 98 42.9
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 3.9e-06 55.8 96 41.7


User provided reference genes

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