Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.6e-294 1015.4 513 100.0
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 5.7e-196 688.0 481 73.8
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 8.0e-190 667.5 471 70.9
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 2.0e-188 662.9 471 70.9
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.3e-187 660.2 479 70.4
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 7.2e-183 644.4 512 66.2
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 6.1e-182 641.3 485 67.8
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 5.2e-181 638.3 521 64.5
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 5.9e-177 624.8 514 65.2
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 3.9e-176 622.1 493 66.9
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 5.6e-175 618.2 515 62.7
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 8.0e-174 614.4 423 73.8
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 8.0e-174 614.4 490 64.3
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 1.4e-173 613.6 494 64.0
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 6.4e-171 604.7 516 60.7
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 4.1e-170 602.1 460 64.6
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 2.7e-169 599.4 487 63.7
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 7.8e-169 597.8 503 62.0
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 1.3e-168 597.0 489 65.0
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 1.3e-168 597.0 514 62.3
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.7e-168 596.7 480 64.2
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.9e-168 595.5 480 64.4
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 5.0e-168 595.1 480 64.8
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.1e-167 594.0 465 63.9
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.5e-167 592.8 459 63.8
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 3.3e-167 592.4 460 63.9
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 4.3e-167 592.0 459 63.8
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 9.5e-167 590.9 460 63.5
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.2e-166 590.5 479 64.3
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.2e-166 590.5 480 64.2
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 2.1e-166 589.7 487 63.4
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 6.2e-166 588.2 489 62.2
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 8.9e-165 584.3 491 61.1
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.2e-164 583.9 514 58.8
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 2.6e-164 582.8 478 62.8
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 5.8e-164 581.6 485 61.6
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 2.9e-163 579.3 479 63.9
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 3.7e-163 578.9 465 63.0
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 5.4e-162 575.1 473 62.8
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 5.4e-162 575.1 476 62.4
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 7.8e-161 571.2 460 63.9
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.1e-160 568.5 456 64.9
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.1e-159 567.4 461 61.2
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.3e-159 565.5 420 67.6
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.3e-159 564.7 480 62.7
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.3e-159 564.7 420 67.4
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 1.2e-158 563.9 507 59.8
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 2.1e-158 563.1 464 62.9
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 5.2e-157 558.5 480 62.1
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 8.9e-157 557.8 477 58.5
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.2e-156 557.4 478 59.4
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 2.6e-156 556.2 470 60.6
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 3.4e-156 555.8 471 59.7
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 9.9e-156 554.3 466 60.9
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 9.9e-156 554.3 472 60.4
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 1.7e-155 553.5 469 59.1
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 6.4e-155 551.6 465 59.8
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 8.4e-155 551.2 429 65.0
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 4.1e-154 548.9 481 59.7
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.6e-153 547.0 462 61.0
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 2.7e-153 546.2 421 63.4
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 3.5e-153 545.8 456 60.3
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 4.6e-153 545.4 477 60.8
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 4.6e-153 545.4 503 57.3
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 3.0e-152 542.7 476 59.5
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 3.9e-152 542.3 515 58.1
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 3.3e-151 539.3 475 58.5
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 3.3e-151 539.3 352 75.3
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 3.3e-151 539.3 476 60.1
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 1.2e-150 537.3 495 59.2
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 8.9e-149 531.2 486 58.4
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 8.9e-149 531.2 523 55.1
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.6e-148 529.6 476 59.5
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 4.4e-148 528.9 478 61.1
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 4.4e-148 528.9 454 60.8
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 4.4e-148 528.9 451 59.6
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 5.8e-148 528.5 467 57.4
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 5.4e-146 521.9 498 57.0
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 2.1e-145 520.0 478 58.2
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.9e-143 513.5 462 59.1
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 2.5e-143 513.1 476 58.4
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 3.3e-143 512.7 506 53.8
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 3.3e-143 512.7 475 58.7
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 4.3e-143 512.3 478 58.2
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 5.6e-143 511.9 471 58.2
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.3e-142 510.8 462 59.5
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 8.1e-142 508.1 480 56.0
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 1.1e-141 507.7 471 57.7
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 1.8e-141 506.9 467 58.2
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 9.0e-141 504.6 422 63.3
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 7.6e-140 501.5 468 55.8
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 5.4e-138 495.4 471 56.5
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.1e-135 487.6 340 70.9
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 3.3e-135 486.1 451 59.2
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 5.3e-133 478.8 420 60.5
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 3.0e-120 436.4 406 54.9
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 8.2e-118 428.3 412 53.4
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.4e-117 427.6 350 63.1
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 2.6e-116 423.3 403 54.3
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 3.0e-112 409.8 423 54.4
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 2.5e-111 406.8 466 49.8
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 3.3e-111 406.4 455 50.1
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 1.7e-99 367.5 328 59.8
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.3e-83 314.7 218 71.6
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.5e-82 311.2 393 44.3
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.4e-71 273.1 185 71.4
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 3.1e-69 266.9 335 48.4
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 5.9e-60 236.1 188 62.8
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 7.8e-44 182.6 214 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 2.0e-39 167.9 318 34.6
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-29 135.6 161 51.6
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 3.5e-28 130.6 137 48.2
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 2.4e-24 117.9 106 51.9
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 2.1e-20 104.8 89 55.1
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.3e-19 102.1 242 28.1
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 4.0e-16 90.5 204 28.9
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 4.0e-16 90.5 204 28.9
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.2e-15 89.0 160 42.5
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 4.9e-14 83.6 327 21.1
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 4.2e-13 80.5 92 55.4
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.0e-11 75.9 143 28.7
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 1.3e-11 75.5 135 30.4
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 3.9e-11 73.9 127 31.5
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 3.9e-11 73.9 127 31.5
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 3.3e-10 70.9 184 26.6
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 7.4e-10 69.7 124 29.8
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 9.6e-10 69.3 121 29.8
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 9.6e-10 69.3 137 28.5
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.3e-09 68.9 124 29.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 2.1e-09 68.2 124 29.0
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 2.1e-09 68.2 126 31.0
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.7e-09 67.4 158 26.6
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.7e-09 67.4 158 26.6
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 3.7e-09 67.4 158 26.6
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.8e-09 67.0 158 26.6
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 4.8e-09 67.0 186 28.0
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 8.2e-09 66.2 136 27.9
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 8.2e-09 66.2 146 25.3
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 8.2e-09 66.2 132 27.3
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 3.1e-08 64.3 127 27.6
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 1.2e-07 62.4 158 25.3
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.5e-07 62.0 147 27.9
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 2.6e-07 61.2 103 31.1
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 4.5e-07 60.5 127 26.0
Peaxi162Scf01124g10012 Petunia axillaris HOM05D003056 ORTHO05D003422 1.0e-06 59.3 154 28.6
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 1.3e-06 58.9 124 26.6
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.3e-06 58.9 124 25.8
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 1.3e-06 58.9 124 26.6
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 1.3e-06 58.9 158 29.1
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 2.2e-06 58.2 101 29.7
BcaNung06913 Brassica carinata HOM05D003056 ORTHO05D003422 2.2e-06 58.2 174 27.0
BolC3t18203H Brassica oleracea HOM05D003056 ORTHO05D003422 2.2e-06 58.2 174 27.0
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 2.9e-06 57.8 153 28.1
A06p33070 Brassica napus HOM05D003056 ORTHO05D003422 3.8e-06 57.4 158 27.2
BraA06t26237Z Brassica rapa HOM05D003056 ORTHO05D003422 3.8e-06 57.4 158 27.2
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 3.8e-06 57.4 148 27.7
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 3.8e-06 57.4 125 29.6
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 4.9e-06 57.0 157 28.0
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 4.9e-06 57.0 158 28.5
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 6.5e-06 56.6 158 27.8
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 6.5e-06 56.6 155 25.2


User provided reference genes

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