Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.4e-306 1055.4 529 100.0
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 8.1e-270 933.3 530 89.4
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 5.4e-250 867.5 530 82.8
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.3e-248 862.1 473 89.6
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 4.3e-247 857.8 479 87.5
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 9.6e-247 856.7 483 86.1
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 3.6e-246 854.7 479 87.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 9.0e-245 850.1 461 90.0
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 2.6e-244 848.6 480 87.7
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 4.5e-244 847.8 540 80.6
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 7.6e-244 847.0 515 83.1
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.9e-243 845.1 509 82.5
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.9e-242 842.4 462 88.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.9e-242 842.4 481 86.7
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.4e-242 842.0 478 86.4
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.2e-242 841.6 463 89.2
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.2e-241 839.7 486 86.0
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.6e-241 839.3 501 83.2
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.3e-240 835.5 474 85.7
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 3.9e-240 834.7 474 85.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 5.1e-240 834.3 526 78.7
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 8.7e-240 833.6 464 86.9
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.1e-239 833.2 474 85.4
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.5e-239 832.8 479 84.8
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.5e-239 832.8 538 78.4
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.9e-239 832.4 484 84.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.5e-239 832.0 461 87.6
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 3.3e-239 831.6 526 78.5
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 4.3e-239 831.2 486 83.1
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 4.3e-239 831.2 484 84.7
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 7.4e-239 830.5 472 86.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.1e-238 828.9 459 87.8
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 4.8e-238 827.8 458 88.4
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.8e-238 827.8 464 86.4
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 6.2e-238 827.4 543 77.0
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.1e-237 826.6 518 81.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.3e-237 824.3 521 79.3
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 6.9e-237 823.9 511 81.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 6.9e-237 823.9 523 79.7
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 9.0e-237 823.5 525 78.9
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 4.5e-236 821.2 473 85.2
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 5.8e-236 820.8 482 83.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-235 819.7 503 82.3
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.7e-235 819.3 528 78.0
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.9e-235 818.5 482 83.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 8.4e-235 817.0 498 80.1
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.1e-234 816.6 459 86.5
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 2.4e-234 815.5 462 84.6
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.4e-234 815.5 498 79.9
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.4e-234 815.5 551 76.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.4e-234 815.5 551 76.0
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.6e-233 812.8 523 79.0
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.7e-233 812.0 458 85.6
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 3.5e-233 811.6 511 79.3
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.0e-232 810.1 460 86.3
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.3e-232 809.7 475 83.2
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.3e-232 808.9 535 78.3
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.3e-232 808.9 514 78.0
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.0e-232 808.5 519 78.2
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.9e-231 805.8 478 82.4
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.9e-231 805.8 461 84.6
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 3.3e-231 805.1 459 84.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.3e-231 805.1 463 84.0
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.3e-231 805.1 484 82.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 7.4e-231 803.9 473 82.0
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 9.6e-231 803.5 462 83.3
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.6e-230 802.7 469 83.4
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.8e-230 802.0 460 84.1
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.1e-229 800.0 461 83.7
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 3.1e-229 798.5 461 83.9
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 5.3e-229 797.7 475 82.3
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.5e-228 796.2 457 84.5
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.5e-228 796.2 459 83.0
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 2.6e-228 795.4 462 83.1
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.3e-227 793.1 480 79.4
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 4.9e-227 791.2 476 79.6
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 6.5e-227 790.8 519 75.7
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 8.4e-227 790.4 484 80.0
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.6e-225 786.2 534 74.9
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.1e-225 785.8 483 80.1
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 2.7e-225 785.4 513 76.0
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.5e-225 785.0 513 76.4
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.9e-225 783.9 484 78.7
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 7.9e-225 783.9 511 77.7
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-224 783.1 510 76.7
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.8e-224 782.7 457 82.7
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.3e-224 782.3 510 76.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.0e-224 781.9 457 82.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.0e-224 781.9 509 78.2
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 3.9e-224 781.6 495 78.0
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 3.9e-224 781.6 510 76.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.3e-222 776.5 479 79.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.1e-222 775.8 457 82.3
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.8e-222 775.4 512 75.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.8e-222 775.4 510 75.9
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.6e-220 768.8 522 73.9
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 7.6e-220 767.3 512 75.4
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.7e-217 758.8 478 77.6
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 4.6e-217 758.1 535 74.2
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.3e-216 756.5 498 73.7
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.0e-216 755.4 469 80.2
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.0e-211 740.3 477 75.9
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.5e-211 737.3 417 84.7
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.6e-209 733.0 478 73.2
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.0e-207 726.1 456 75.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.7e-206 723.0 522 68.6
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 2.4e-205 719.2 460 77.4
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.6e-204 715.7 462 76.0
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 5.9e-204 714.5 417 83.0
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 4.2e-202 708.4 450 82.0
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.1e-201 706.1 457 74.0
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 6.1e-201 704.5 462 72.9
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 6.7e-200 701.0 522 71.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.6e-199 699.1 456 79.6
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.6e-199 699.1 460 76.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.7e-199 698.0 455 79.1
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 2.7e-193 679.1 427 77.0
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.0e-192 675.6 372 87.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.5e-191 673.3 372 86.8
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.6e-188 663.3 468 73.5
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 5.0e-187 658.3 493 68.2
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 3.2e-186 655.6 729 50.8
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 4.0e-184 648.7 401 81.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.2e-183 647.1 453 67.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 3.2e-178 629.0 478 68.0
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 5.5e-178 628.2 470 70.6
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 8.3e-174 614.4 493 64.7
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.5e-167 593.6 342 86.0
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.0e-160 568.9 390 76.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.6e-122 442.2 316 73.1
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 3.7e-121 439.5 272 80.9
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 3.4e-119 433.0 238 89.1
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.8e-104 384.0 292 66.1
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 8.8e-99 365.2 258 74.8
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.3e-98 362.8 449 42.3
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 6.7e-91 339.0 448 39.5
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.0e-90 337.4 201 81.6
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.4e-88 331.3 453 39.3
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 4.8e-81 306.2 229 67.2
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.0e-70 271.9 400 43.5
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.9e-62 243.8 131 88.5
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 7.2e-61 239.2 206 63.1
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.3e-57 228.4 167 68.9
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.4e-56 224.2 196 61.7
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 8.6e-54 215.7 165 68.5
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 8.6e-46 189.1 123 68.3
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 4.3e-45 186.8 98 90.8
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 5.6e-45 186.4 129 65.9
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 9.5e-45 185.7 249 44.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.7e-44 183.3 378 31.0
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.4e-40 171.8 119 73.1
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 9.2e-40 169.1 91 90.1
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.6e-37 159.8 124 62.1
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.5e-34 151.8 80 91.2
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 3.7e-33 147.1 93 81.7
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.3e-29 134.0 290 31.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.1e-28 131.3 74 86.5
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 4.7e-28 130.2 100 64.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 8.9e-27 125.9 100 62.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 3.9e-14 84.0 54 66.7
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.4e-11 75.5 67 53.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.4e-11 75.5 41 80.5
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 3.1e-11 74.3 47 70.2
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 2.0e-10 71.6 61 62.3
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 2.1e-07 61.6 38 78.9
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 4.6e-07 60.5 35 74.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 6.7e-06 56.6 34 73.5


User provided reference genes

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