Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0283 Trochodendron aralioides HOM05D002965 ORTHO05D011254 8.8e-60 233.4 117 100.0
Nn1g09985 Nelumbo nucifera HOM05D002965 ORTHO05D011254 4.1e-57 224.6 117 96.6
Aqoxy4G01610 Aquilegia oxysepala HOM05D002965 ORTHO05D011254 1.9e-54 215.7 117 92.3
CAN.G309.5 Capsicum annuum HOM05D002965 ORTHO05D011254 7.2e-54 213.8 117 91.5
CAN.G980.8 Capsicum annuum HOM05D002965 ORTHO05D011254 7.2e-54 213.8 117 91.5
CAN.G2446.1 Capsicum annuum HOM05D002965 ORTHO05D011254 9.4e-54 213.4 117 90.6
HanXRQMTg0579431 Helianthus annuus HOM05D002965 ORTHO05D011254 9.4e-54 213.4 117 91.5
Cpa.g.sc263.25 Carica papaya HOM05D002965 ORTHO05D011254 3.6e-53 211.5 117 90.6
FvH4_c1g00301 Fragaria vesca HOM05D002965 ORTHO05D011254 6.1e-53 210.7 117 91.5
RcHm_v2.0_MTg0499281 Rosa chinensis HOM05D002965 ORTHO05D011254 6.1e-53 210.7 117 91.5
DCAR_032430 Daucus carota HOM05D002965 ORTHO05D011254 8.0e-53 210.3 117 90.6
CANSAT16G0004 Cannabis sativa HOM05D002965 ORTHO05D011254 3.0e-52 208.4 117 90.6
CsaV3_UNG209180 Cucumis sativus L. HOM05D002965 ORTHO05D011254 1.2e-51 206.5 117 86.3
Zm00001eb181640 Zea mays HOM05D002965 ORTHO05D011254 2.0e-51 205.7 117 88.9
Oeu041040.1 Olea europaea HOM05D002965 ORTHO05D011254 3.3e-51 204.9 117 88.9
SalBow1G6418 Salvia bowleyana HOM05D002965 ORTHO05D011254 3.3e-51 204.9 117 88.9
SalBow1G6521 Salvia bowleyana HOM05D002965 ORTHO05D011254 3.3e-51 204.9 117 88.9
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 9.7e-51 203.4 112 91.1
unitig_87.g27937 Utricularia gibba HOM05D002965 ORTHO05D011254 1.1e-49 199.9 117 86.3
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 7.0e-49 197.2 111 86.5
Ah.04g159750 Amaranthus hybridus HOM05D002965 ORTHO05D011254 1.4e-41 172.9 101 84.2
Solyc00g500113.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 6.6e-39 164.1 94 87.2
Manes.01G049465 Manihot esculenta HOM05D002965 ORTHO05D011254 1.4e-36 156.4 88 88.6
Aqoxy12s040 Aquilegia oxysepala HOM05D002965 ORTHO05D011254 1.2e-29 133.3 78 84.6
Nitab4.5_0000172g1640 Nicotiana tabacum HOM05D002965 ORTHO05D011254 1.8e-28 129.4 117 63.2
RcHm_v2.0_Chr6g0245591 Rosa chinensis HOM05D002965 ORTHO05D011254 8.9e-28 127.1 73 84.9
Os12g0424300 Oryza sativa ssp. japonica HOM05D002965 ORTHO05D011254 1.6e-24 116.3 66 86.4
SalBow4G1982 Salvia bowleyana HOM05D002965 ORTHO05D011254 1.8e-20 102.8 54 90.7
Mapoly0055s0102 Marchantia polymorpha HOM05D002965 ORTHO05D011254 2.0e-19 99.4 88 60.2
Nitab4.5_0011744g0010 Nicotiana tabacum HOM05D002965 ORTHO05D011254 8.3e-18 94.0 54 83.3
Mapoly0055s0103 Marchantia polymorpha HOM05D002965 ORTHO05D011254 2.1e-16 89.4 83 57.8
Solyc10g018953.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 7.8e-16 87.4 110 49.1
Nitab4.5_0001796g0220 Nicotiana tabacum HOM05D007924 ORTHO05D017087 9.5e-14 80.5 52 76.9
SMO367G0840 Selaginella moellendorffii HOM05D002940 ORTHO05D011254 6.2e-13 77.8 100 40.0
Haze_27169 Corylus avellana HOM05D002940 ORTHO05D003344 8.1e-13 77.4 109 34.9
Haze_27170 Corylus avellana HOM05D002940 ORTHO05D003344 8.1e-13 77.4 109 34.9
Pp3c2_23430 Physcomitrium patens HOM05D002965 ORTHO05D011254 5.2e-12 74.7 79 50.6
arahy.Tifrunner.gnm1.ann1.D42DGE Arachis hypogaea HOM05D002940 ORTHO05D003344 1.5e-11 73.2 105 38.1
arahy.Tifrunner.gnm1.ann1.VL5M3T Arachis hypogaea HOM05D002940 ORTHO05D003344 1.5e-11 73.2 105 38.1
Gorai.010G047600 Gossypium raimondii HOM05D002940 ORTHO05D003344 2.0e-11 72.8 110 36.4
Gohir.D06G042300 Gossypium hirsutum HOM05D002940 ORTHO05D003344 3.4e-11 72.0 108 36.1
Ca_18855_v3 Cicer arietinum L. HOM05D002940 ORTHO05D003344 5.8e-11 71.2 103 37.9
Gohir.A06G041400 Gossypium hirsutum HOM05D002940 ORTHO05D003344 5.8e-11 71.2 108 35.2
Ca_16127_v3 Cicer arietinum L. HOM05D002940 ORTHO05D003344 7.5e-11 70.9 103 36.9
Ca_30304_v3 Cicer arietinum L. HOM05D002940 ORTHO05D003344 7.5e-11 70.9 103 36.9
Psat7g162680 Pisum sativum HOM05D002940 ORTHO05D003344 7.5e-11 70.9 103 37.9
Cfa015965 Carpinus fangiana HOM05D002940 ORTHO05D003344 1.3e-10 70.1 109 40.4
Haze_00517 Corylus avellana HOM05D002940 ORTHO05D003344 1.3e-10 70.1 109 40.4
Haze_01263 Corylus avellana HOM05D002940 ORTHO05D003344 1.3e-10 70.1 109 40.4
Lj3g0011570 Lotus japonicus HOM05D002940 ORTHO05D003344 1.3e-10 70.1 107 38.3
Lalb_Chr17g0339621 Lupinus albus HOM05D002940 ORTHO05D003344 1.3e-10 70.1 105 37.1
Phvul.008G213500 Phaseolus vulgaris HOM05D002940 ORTHO05D003344 1.3e-10 70.1 105 37.1
Duzib093G0986 Durio zibethinus HOM05D002940 ORTHO05D003344 1.7e-10 69.7 108 36.1
Cpa.g.sc36.2 Carica papaya HOM05D002940 ORTHO05D003344 2.2e-10 69.3 110 40.9
CiPaw.05G227900 Carya illinoinensis HOM05D002940 ORTHO05D003344 2.2e-10 69.3 110 39.1
Medtr4g081120 Medicago truncatula HOM05D002940 ORTHO05D003344 2.2e-10 69.3 103 37.9
QL02p049208 Quercus lobata HOM05D002940 ORTHO05D003344 2.2e-10 69.3 109 40.4
VMungo1215G1787 Vigna mungo HOM05D002940 ORTHO05D003344 2.2e-10 69.3 105 37.1
Glyma.02G078000 Glycine max HOM05D002940 ORTHO05D003344 2.9e-10 68.9 105 37.1
Rhsim04G0111800 Rhododendron simsii HOM05D002940 ORTHO05D003344 2.9e-10 68.9 110 36.4
Pp3c15_6860 Physcomitrium patens HOM05D002965 ORTHO05D011254 3.7e-10 68.6 74 47.3
CANSAT01G1113 Cannabis sativa HOM05D002940 ORTHO05D003344 6.4e-10 67.8 107 35.5
Carub.0002s2465 Capsella rubella HOM05D002940 ORTHO05D003344 6.4e-10 67.8 109 38.5
Ciclev10022660m.g Citrus clementina HOM05D002940 ORTHO05D003344 6.4e-10 67.8 109 37.6
Rhsim04G0112300 Rhododendron simsii HOM05D002940 ORTHO05D003344 6.4e-10 67.8 108 38.0
Pp3c22_5010 Physcomitrium patens HOM05D002965 ORTHO05D011254 8.3e-10 67.4 74 45.9
THA.LOC104800179 Tarenaya hassleriana HOM05D002940 ORTHO05D003344 8.3e-10 67.4 107 40.2
ClCG03G009300 Citrullus lanatus HOM05D002940 ORTHO05D003344 1.1e-09 67.0 112 38.4
Potri.002G088400 Populus trichocarpa HOM05D002940 ORTHO05D003344 1.1e-09 67.0 112 36.6
Sabra02G0069600 Salix brachista HOM05D002940 ORTHO05D003344 1.1e-09 67.0 112 36.6
AT1G77750 Arabidopsis thaliana HOM05D002940 ORTHO05D003344 1.4e-09 66.6 109 38.5
AL2G37980 Arabidopsis lyrata HOM05D002940 ORTHO05D003344 1.9e-09 66.2 90 43.3
TWI56G0910 Tripterygium wilfordii HOM05D002940 ORTHO05D003344 1.9e-09 66.2 107 34.6
BcaNung06313 Brassica carinata HOM05D002940 ORTHO05D003344 3.2e-09 65.5 109 37.6
CsaV3_5G023340 Cucumis sativus L. HOM05D002940 ORTHO05D003344 4.1e-09 65.1 112 37.5
Atru.chr1.3247 Acer truncatum HOM05D002940 ORTHO05D003344 5.4e-09 64.7 109 37.6
Atru.chr11.1129 Acer truncatum HOM05D002940 ORTHO05D003344 5.4e-09 64.7 109 37.6
BcaB05g25073 Brassica carinata HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
BcaC03g15767 Brassica carinata HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
BcaC08g47595 Brassica carinata HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
A02p21790 Brassica napus HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
A07p43050 Brassica napus HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
C02p35090 Brassica napus HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
C06p51700 Brassica napus HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
BraA07t31826Z Brassica rapa HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
Thhalv10019274m.g Eutrema salsugineum HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
Sp5g32920 Schrenkiella parvula HOM05D002940 ORTHO05D003344 7.1e-09 64.3 109 37.6
BolC2t09523H Brassica oleracea HOM05D002940 ORTHO05D003344 9.2e-09 63.9 109 36.7
CARHR071260 Cardamine hirsuta HOM05D002940 ORTHO05D003344 9.2e-09 63.9 109 38.5
BcaB03g15926 Brassica carinata HOM05D002940 ORTHO05D003344 1.2e-08 63.5 90 42.2
CsaV3_2G026750 Cucumis sativus L. HOM05D002940 ORTHO05D003344 1.2e-08 63.5 105 40.0
Sed0017097 Sechium edule HOM05D002940 ORTHO05D003344 1.2e-08 63.5 112 37.5
FvH4_2g26171 Fragaria vesca HOM05D002940 ORTHO05D003344 1.6e-08 63.2 107 36.4
PRCOL_00004293 Prasinoderma coloniale HOM05D002940 ORTHO05D003344 1.6e-08 63.2 112 32.1
RcHm_v2.0_Chr6g0294601 Rosa chinensis HOM05D002940 ORTHO05D003344 1.6e-08 63.2 107 36.4
Aa31LG4G7860 Aethionema arabicum HOM05D002940 ORTHO05D003344 2.1e-08 62.8 109 37.6
PGR044G0108 Punica granatum HOM05D002940 ORTHO05D003344 2.1e-08 62.8 109 39.4
Nitab4.5_0002653g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011068 2.7e-08 62.4 37 83.8
Manes.02G159400 Manihot esculenta HOM05D002940 ORTHO05D003344 4.6e-08 61.6 106 34.9
Pp3c24_11830 Physcomitrium patens HOM05D002940 ORTHO05D003344 4.6e-08 61.6 111 29.7
SEGI_00658 Sequoiadendron giganteum HOM05D002940 ORTHO05D003344 4.6e-08 61.6 110 36.4
HPP92_019612 Vanilla planifolia HOM05D002940 ORTHO05D003344 7.8e-08 60.8 110 31.8
Prupe.1G504900 Prunus persica HOM05D002940 ORTHO05D003344 1.0e-07 60.5 107 34.6
Zm00001eb054380 Zea mays HOM05D002940 ORTHO05D003344 1.7e-07 59.7 110 32.7
MCO01G196 Micromonas commoda HOM05D002940 ORTHO05D003344 2.3e-07 59.3 112 32.1
Nn1g08918 Nelumbo nucifera HOM05D002940 ORTHO05D003344 5.1e-07 58.2 119 28.6
Eucgr.L03087 Eucalyptus grandis HOM05D002940 ORTHO05D003344 1.1e-06 57.0 109 34.9
Os03g0704000 Oryza sativa ssp. japonica HOM05D002940 ORTHO05D003344 1.1e-06 57.0 108 31.5
SMO364G0129 Selaginella moellendorffii HOM05D002940 ORTHO05D003344 1.9e-06 56.2 110 30.0
ATR0684G219 Amborella trichopoda HOM05D002940 ORTHO05D003344 4.3e-06 55.1 110 30.0
Cc00_g12510 Coffea canephora HOM05D002940 ORTHO05D003344 4.3e-06 55.1 110 30.0
Glyma.04G253300 Glycine max HOM05D002940 ORTHO05D003344 4.3e-06 55.1 110 29.1
Glyma.06G109300 Glycine max HOM05D002940 ORTHO05D003344 4.3e-06 55.1 110 29.1
Psat5g134240 Pisum sativum HOM05D002940 ORTHO05D003344 4.3e-06 55.1 110 27.3
VMungo1215G1631 Vigna mungo HOM05D002940 ORTHO05D003344 4.3e-06 55.1 110 29.1
DCAR_002816 Daucus carota HOM05D002940 ORTHO05D003344 5.6e-06 54.7 109 31.2
Medtr3g073140 Medicago truncatula HOM05D002940 ORTHO05D003344 5.6e-06 54.7 110 27.3
Oeu005371.1 Olea europaea HOM05D002940 ORTHO05D003344 5.6e-06 54.7 110 29.1
Sed0020376 Sechium edule HOM05D002940 ORTHO05D003344 5.6e-06 54.7 110 29.1
Sc23g0000890 Simmondsia chinensis HOM05D002940 ORTHO05D003344 5.6e-06 54.7 110 30.9
MELO3C003061.2 Cucumis melo HOM05D002940 ORTHO05D003344 7.3e-06 54.3 110 29.1
Hund16826 Selenicereus undatus HOM05D002940 ORTHO05D003344 7.3e-06 54.3 108 29.6
Cre12.g493950 Chlamydomonas reinhardtii HOM05D002940 ORTHO05D003344 9.5e-06 53.9 103 34.0
CsaV3_2G026730 Cucumis sativus L. HOM05D002940 ORTHO05D003344 9.5e-06 53.9 110 29.1
HanXRQChr01g0005481 Helianthus annuus HOM05D002940 ORTHO05D003344 9.5e-06 53.9 110 30.0
GSVIVG01008933001 Vitis vinifera HOM05D002940 ORTHO05D003344 9.5e-06 53.9 110 30.0


User provided reference genes

Program Settings