Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0275 Trochodendron aralioides HOM05D000173 ORTHO05D416025 1.5e-86 322.8 159 100.0
MELO3C004459.2 Cucumis melo HOM05D000173 ORTHO05D008065 4.0e-15 85.5 94 54.3
CiPaw.03G247000 Carya illinoinensis HOM05D000173 ORTHO05D008065 1.2e-14 84.0 111 47.7
Lsat_1_v5_gn_5_96421 Lactuca sativa HOM05D000173 ORTHO05D008065 1.2e-14 84.0 93 53.8
FAN23G2413 Fragaria x ananassa HOM05D000173 ORTHO05D008065 4.4e-14 82.0 111 47.7
FAN23G3073 Fragaria x ananassa HOM05D000173 ORTHO05D008065 4.4e-14 82.0 111 47.7
FAN26G0206 Fragaria x ananassa HOM05D000173 ORTHO05D008065 4.4e-14 82.0 111 47.7
RcHm_v2.0_Chr2g0087891 Rosa chinensis HOM05D000173 ORTHO05D008065 4.4e-14 82.0 111 47.7
TAR636G3437 Trochodendron aralioides HOM05D000173 ORTHO05D008065 7.6e-14 81.3 111 46.8
Haze_25535 Corylus avellana HOM05D000173 ORTHO05D008065 9.9e-14 80.9 110 48.2
Haze_25540 Corylus avellana HOM05D000173 ORTHO05D008065 9.9e-14 80.9 110 48.2
Eucgr.C04260 Eucalyptus grandis HOM05D000173 ORTHO05D008065 9.9e-14 80.9 110 47.3
Lalb_Chr08g0234671 Lupinus albus HOM05D000173 ORTHO05D008065 9.9e-14 80.9 107 47.7
Sed0025274 Sechium edule HOM05D000173 ORTHO05D008065 9.9e-14 80.9 111 46.8
FAN28G0768 Fragaria x ananassa HOM05D000173 ORTHO05D008065 1.3e-13 80.5 111 46.8
SalBow6G5422 Salvia bowleyana HOM05D000173 ORTHO05D008065 1.3e-13 80.5 110 47.3
Aqoxy7G03664 Aquilegia oxysepala HOM05D000173 ORTHO05D008065 1.7e-13 80.1 110 47.3
Phvul.003G068000 Phaseolus vulgaris HOM05D000173 ORTHO05D008065 1.7e-13 80.1 110 47.3
SGA_v2.0_scaffold1819G54044 Striga asiatica HOM05D000173 ORTHO05D008065 1.7e-13 80.1 105 49.5
VMungo0251G0991 Vigna mungo HOM05D000173 ORTHO05D008065 1.7e-13 80.1 110 47.3
Atru.chr7.1116 Acer truncatum HOM05D000173 ORTHO05D008065 2.2e-13 79.7 110 47.3
ClCG11G003220 Citrullus lanatus HOM05D000173 ORTHO05D008065 2.2e-13 79.7 112 46.4
CsaV3_2G003040 Cucumis sativus L. HOM05D000173 ORTHO05D008065 2.2e-13 79.7 111 46.8
QL02p089534 Quercus lobata HOM05D000173 ORTHO05D008065 2.2e-13 79.7 110 46.4
arahy.Tifrunner.gnm1.ann1.VL0260 Arachis hypogaea HOM05D000173 ORTHO05D008065 2.9e-13 79.3 110 47.3
Cfa003406 Carpinus fangiana HOM05D000173 ORTHO05D008065 2.9e-13 79.3 110 47.3
FvH4_1g02800 Fragaria vesca HOM05D000173 ORTHO05D008065 2.9e-13 79.3 111 46.8
Peaxi162Scf00148g00088 Petunia axillaris HOM05D000173 ORTHO05D008065 4.9e-13 78.6 93 50.5
Oeu012615.1 Olea europaea HOM05D000173 ORTHO05D008065 6.4e-13 78.2 109 46.8
CSS0043826 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D008065 8.4e-13 77.8 110 46.4
Lj7A426T66 Lonicera japonica HOM05D000173 ORTHO05D008065 8.4e-13 77.8 110 45.5
Potri.018G128300 Populus trichocarpa HOM05D000173 ORTHO05D008065 8.4e-13 77.8 111 45.9
Ciclev10008344m.g Citrus clementina HOM05D000173 ORTHO05D008065 1.4e-12 77.0 110 45.5
Glyma.04G071500 Glycine max HOM05D000173 ORTHO05D008065 1.4e-12 77.0 110 46.4
HanXRQChr10g0315711 Helianthus annuus HOM05D000173 ORTHO05D008065 1.4e-12 77.0 110 45.5
Manes.06G056200 Manihot esculenta HOM05D000173 ORTHO05D008065 1.4e-12 77.0 111 46.8
GSVIVG01015556001 Vitis vinifera HOM05D000173 ORTHO05D008065 1.4e-12 77.0 110 46.4
CANSAT11G2412 Cannabis sativa HOM05D000173 ORTHO05D008065 1.9e-12 76.6 111 45.0
TPR.G9552 Trifolium pratense HOM05D000173 ORTHO05D008065 1.9e-12 76.6 110 44.5
Ca_02766_v3 Cicer arietinum L. HOM05D000173 ORTHO05D008065 2.4e-12 76.3 110 44.5
Sc18g0000440 Simmondsia chinensis HOM05D000173 ORTHO05D008065 2.4e-12 76.3 111 43.2
ATR0767G250 Amborella trichopoda HOM05D000173 ORTHO05D008065 3.2e-12 75.9 111 44.1
Cc06_g08200 Coffea canephora HOM05D000173 ORTHO05D008065 3.2e-12 75.9 110 44.5
PSO170G4595 Papaver somniferum HOM05D000173 ORTHO05D008065 3.2e-12 75.9 110 45.5
PSO782G3791 Papaver somniferum HOM05D000173 ORTHO05D008065 3.2e-12 75.9 110 45.5
CAN.G560.5 Capsicum annuum HOM05D000173 ORTHO05D008065 4.2e-12 75.5 110 43.6
MSTRG.19615 Avicennia marina HOM05D000173 ORTHO05D008065 5.4e-12 75.1 110 45.5
MD15G1169700 Malus domestica HOM05D000173 ORTHO05D008065 5.4e-12 75.1 111 45.0
MBI04_g29331_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D008065 7.1e-12 74.7 104 47.1
Sabra18G0109100 Salix brachista HOM05D000173 ORTHO05D008065 7.1e-12 74.7 111 44.1
SEGI_24134 Sequoiadendron giganteum HOM05D000173 ORTHO05D008065 7.1e-12 74.7 111 42.3
DCAR_017799 Daucus carota HOM05D000173 ORTHO05D008065 9.3e-12 74.3 110 45.5
ECA234G2265 Erigeron canadensis HOM05D000173 ORTHO05D008065 9.3e-12 74.3 110 43.6
vmacro20579 Vaccinium macrocarpon HOM05D000173 ORTHO05D008065 9.3e-12 74.3 110 45.5
Rhsim01G0066700 Rhododendron simsii HOM05D000173 ORTHO05D008065 1.2e-11 73.9 110 45.5
Prupe.7G246800 Prunus persica HOM05D000173 ORTHO05D008065 1.6e-11 73.6 111 45.0
Actinidia21965 Actinidia chinensis HOM05D000173 ORTHO05D008065 2.1e-11 73.2 110 43.6
Solyc05g018600.3 Solanum lycopersicum HOM05D000173 ORTHO05D008065 2.1e-11 73.2 110 42.7
Sopen05g015760 Solanum pennellii HOM05D000173 ORTHO05D008065 2.1e-11 73.2 110 42.7
PGSC0003DMG400014966 Solanum tuberosum HOM05D000173 ORTHO05D008065 2.1e-11 73.2 110 42.7
CDE07G0544 Ceratophyllum demersum HOM05D000173 ORTHO05D008065 2.7e-11 72.8 111 42.3
Migut.J01219 Erythranthe guttata HOM05D000173 ORTHO05D008065 2.7e-11 72.8 110 45.5
arahy.Tifrunner.gnm1.ann1.093KP0 Arachis hypogaea HOM05D002360 ORTHO05D006297 3.5e-11 72.4 96 45.8
AUR62013322 Chenopodium quinoa HOM05D000173 ORTHO05D008065 3.5e-11 72.4 110 42.7
THA.LOC104815099 Tarenaya hassleriana HOM05D000173 ORTHO05D008065 3.5e-11 72.4 110 43.6
Medtr2g445210 Medicago truncatula HOM05D000173 ORTHO05D008065 4.6e-11 72.0 96 43.8
TWI32G0173 Tripterygium wilfordii HOM05D000173 ORTHO05D008065 4.6e-11 72.0 110 44.5
BcaB04g16922 Brassica carinata HOM05D000173 ORTHO05D008065 6.0e-11 71.6 111 43.2
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 6.0e-11 71.6 111 43.2
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 6.0e-11 71.6 111 43.2
AUR62011163 Chenopodium quinoa HOM05D000173 ORTHO05D008065 1.0e-10 70.9 110 42.7
AL5G20780 Arabidopsis lyrata HOM05D000173 ORTHO05D008065 1.7e-10 70.1 110 42.7
AT3G33520 Arabidopsis thaliana HOM05D000173 ORTHO05D008065 1.7e-10 70.1 110 42.7
EL10Ac8g18700 Beta vulgaris HOM05D000173 ORTHO05D008065 1.7e-10 70.1 105 43.8
Cpa.g.sc46.24 Carica papaya HOM05D000173 ORTHO05D008065 3.0e-10 69.3 110 41.8
Gohir.D07G041100 Gossypium hirsutum HOM05D000173 ORTHO05D008065 3.0e-10 69.3 173 35.3
Gorai.001G043500 Gossypium raimondii HOM05D000173 ORTHO05D008065 3.0e-10 69.3 173 35.3
MD02G1028000 Malus domestica HOM05D000173 ORTHO05D008065 3.9e-10 68.9 111 42.3
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 5.1e-10 68.6 110 42.7
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 5.1e-10 68.6 110 42.7
Thhalv10011531m.g Eutrema salsugineum HOM05D000173 ORTHO05D008065 5.1e-10 68.6 110 42.7
BcaB04g16923 Brassica carinata HOM05D000173 ORTHO05D008065 6.6e-10 68.2 110 41.8
Carub.0016s0009 Capsella rubella HOM05D000173 ORTHO05D008065 6.6e-10 68.2 110 41.8
Gohir.A07G036900 Gossypium hirsutum HOM05D000173 ORTHO05D008065 6.6e-10 68.2 173 35.3
Thecc.09G129900 Theobroma cacao HOM05D000173 ORTHO05D008065 6.6e-10 68.2 110 40.9
Zm00001eb411820 Zea mays HOM05D000173 ORTHO05D008065 8.7e-10 67.8 111 39.6
CARHR153600 Cardamine hirsuta HOM05D000173 ORTHO05D008065 1.5e-09 67.0 110 40.9
Sp1g41720 Schrenkiella parvula HOM05D000173 ORTHO05D008065 1.5e-09 67.0 110 41.8
Hund09272 Selenicereus undatus HOM05D000173 ORTHO05D008065 2.5e-09 66.2 96 41.7
unitig_60.g25514 Utricularia gibba HOM05D000173 ORTHO05D008065 3.3e-09 65.9 106 40.6
Os01g0269900 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D008065 9.6e-09 64.3 111 36.9
Gohir.A06G054400 Gossypium hirsutum HOM05D000173 ORTHO05D008065 1.6e-08 63.5 110 40.0
Ah.09g225120 Amaranthus hybridus HOM05D000173 ORTHO05D008065 2.8e-08 62.8 95 44.2
arahy.Tifrunner.gnm1.ann1.L0MYGA Arachis hypogaea HOM05D000173 ORTHO05D008065 2.8e-08 62.8 145 34.5
Gorai.010G062300 Gossypium raimondii HOM05D000173 ORTHO05D008065 3.6e-08 62.4 110 39.1
Dinv36494 Davidia involucrata HOM05D000173 ORTHO05D008065 2.4e-07 59.7 36 77.8
Nn2g12082 Nelumbo nucifera HOM05D000173 ORTHO05D008065 2.4e-07 59.7 36 77.8
Gohir.D06G053300 Gossypium hirsutum HOM05D000173 ORTHO05D008065 3.1e-07 59.3 110 38.2
Lj6g0009868 Lotus japonicus HOM05D000173 ORTHO05D008065 6.9e-07 58.2 36 75.0


User provided reference genes

Program Settings