Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 0.0e+00 1320.1 998 100.0
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 2.9e-297 1025.4 1000 81.0
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 6.3e-292 1007.7 1060 74.3
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 1.2e-279 966.8 1037 75.8
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 6.2e-279 964.5 1046 73.3
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 1.4e-278 963.4 1043 75.8
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 1.8e-278 963.0 1041 75.4
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 5.8e-277 958.0 1098 72.9
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 7.5e-277 957.6 1043 76.2
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 9.8e-277 957.2 1100 70.1
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.7e-276 956.4 1041 72.3
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.7e-276 956.4 1041 72.3
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 3.7e-276 955.3 1056 72.1
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 6.4e-276 954.5 1081 72.2
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 3.5e-274 948.7 1045 72.2
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 7.8e-274 947.6 1106 69.6
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 7.8e-274 947.6 1109 68.9
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 1.0e-273 947.2 1033 72.2
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.7e-273 946.4 1069 75.6
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 3.9e-273 945.3 1047 75.4
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.9e-272 943.0 1056 71.6
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 2.5e-272 942.6 1040 72.9
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 2.5e-272 942.6 1036 73.0
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 9.5e-272 940.6 1039 71.2
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 2.1e-271 939.5 1060 72.1
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.1e-270 937.2 1109 68.5
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 1.8e-270 936.4 1079 70.9
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 2.3e-270 936.0 1109 68.4
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 3.1e-270 935.6 1000 77.2
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 6.8e-270 934.5 1035 72.5
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 5.8e-269 931.4 1125 71.4
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 7.5e-269 931.0 1109 68.3
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 4.9e-268 928.3 1051 70.8
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 4.9e-268 928.3 1056 71.1
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.9e-267 926.4 1039 71.0
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 3.2e-267 925.6 1038 71.7
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 4.1e-267 925.2 1109 70.2
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 4.1e-267 925.2 1040 70.7
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.6e-266 923.3 1031 71.0
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 2.1e-266 922.9 1105 69.5
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 2.3e-265 919.5 1030 71.8
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.9e-265 918.7 1040 61.7
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 1.5e-264 916.8 1047 76.2
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 5.6e-264 914.8 1050 70.5
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 2.8e-263 912.5 1039 69.7
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 1.2e-261 907.1 1107 68.7
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 2.6e-261 906.0 1041 69.6
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 3.4e-261 905.6 1046 70.2
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 3.8e-260 902.1 1032 70.4
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.1e-259 900.6 1108 67.8
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 1.4e-259 900.2 1058 69.7
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.4e-259 900.2 1106 67.5
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 4.1e-259 898.7 1048 69.3
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 7.8e-258 894.4 1042 70.2
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 2.3e-257 892.9 1025 70.4
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 3.0e-257 892.5 1032 71.1
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 1.2e-255 887.1 1075 70.3
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.2e-255 887.1 1075 70.3
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 2.1e-255 886.3 1082 65.6
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 5.4e-251 871.7 1033 66.5
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 9.3e-251 870.9 1048 65.3
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 7.8e-250 867.8 1108 66.3
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 1.7e-249 866.7 1037 62.7
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 1.7e-249 866.7 1038 68.6
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 1.5e-248 863.6 1014 70.6
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 2.5e-248 862.8 1047 65.7
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 3.3e-248 862.4 1039 68.3
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 3.3e-248 862.4 1055 65.1
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 3.3e-248 862.4 1055 65.1
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.6e-247 860.1 1079 68.3
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 6.2e-247 858.2 1039 68.1
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 6.2e-247 858.2 1037 70.3
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 4.0e-246 855.5 1072 64.4
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 9.9e-245 850.9 1075 66.9
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.4e-243 846.3 1075 67.0
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 2.4e-243 846.3 1051 67.2
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 3.2e-243 845.9 1037 67.6
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 2.1e-242 843.2 1211 49.5
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 6.0e-242 841.6 1082 63.6
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.1e-238 830.9 1029 68.3
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.5e-237 827.0 1124 48.1
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 5.8e-237 825.1 1049 64.0
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 9.3e-235 817.8 1041 66.5
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.0e-233 814.3 1056 67.0
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 3.9e-233 812.4 1059 60.2
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.1e-232 810.8 1016 65.0
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 3.4e-229 799.3 784 82.7
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.7e-228 797.0 484 79.5
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 1.9e-227 793.5 1054 63.1
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 2.4e-222 776.5 485 76.5
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 4.6e-218 762.3 1048 65.6
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 6.1e-218 761.9 485 77.3
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 1.8e-217 760.4 484 75.8
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 1.8e-217 760.4 913 75.9
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.3e-217 760.0 486 76.5
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.5e-216 756.5 798 89.8
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.1e-214 748.0 782 67.9
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.5e-213 747.3 1015 59.6
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.3e-212 744.2 1018 56.4
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 7.9e-210 734.9 996 65.7
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 9.1e-198 694.9 979 59.4
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 4.1e-182 642.9 482 66.2
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 1.6e-170 604.4 914 63.5
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.1e-158 565.1 956 55.6
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 3.4e-144 516.9 989 46.4
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 8.7e-140 502.3 1000 48.4
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.2e-133 481.9 443 57.1
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 2.1e-125 454.5 773 68.4
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 2.4e-113 414.5 253 76.3
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 9.4e-102 375.9 537 40.4
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 2.3e-92 344.7 205 78.5
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 3.0e-92 344.4 496 44.2
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 3.2e-86 324.3 202 75.2
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 4.5e-80 303.9 699 55.5
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 2.4e-73 281.6 334 49.4
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 1.1e-70 272.7 344 47.4
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 2.5e-70 271.6 451 36.1
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 1.2e-64 252.7 495 36.6
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 1.6e-64 252.3 265 53.6
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 4.7e-61 240.7 162 72.8
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.0e-60 239.6 335 54.6
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 2.7e-56 224.9 147 78.9
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 1.4e-49 202.6 149 70.5
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 3.5e-48 198.0 133 66.9
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 3.5e-40 171.4 99 78.8
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 7.3e-38 163.7 130 63.8
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 1.2e-37 162.9 130 63.8
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.1e-36 159.8 111 74.8
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 6.8e-36 157.1 93 84.9
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 6.8e-36 157.1 129 67.4
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 5.8e-35 154.1 191 47.6
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 4.1e-33 147.9 93 78.5
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.9e-30 139.0 74 79.7
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 5.2e-28 131.0 93 68.8
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 1.2e-27 129.8 83 78.3
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.1e-22 113.2 73 72.6
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 1.9e-22 112.5 105 58.1
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.3e-18 99.8 129 45.0
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.0e-15 90.1 120 42.5
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 1.3e-15 89.7 290 26.6
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.5e-11 76.3 43 83.7
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.1e-08 65.9 43 72.1
ATR0030G038 Amborella trichopoda HOM05D047453 ORTHO05D006199 4.6e-08 64.7 174 32.2
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 2.3e-07 62.4 49 49.0
ATR0661G285 Amborella trichopoda HOM05D047453 ORTHO05D069139 3.0e-07 62.0 175 31.4
HanXRQChr06g0176501 Helianthus annuus HOM05D004966 ORTHO05D006199 1.1e-06 60.1 39 74.4
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.9e-06 59.3 71 47.9


User provided reference genes

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