Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 2.5e-92 342.0 169 100.0
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 3.0e-77 292.0 167 85.0
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.0e-76 289.3 167 82.6
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 2.4e-74 282.3 165 83.0
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 6.9e-74 280.8 167 80.2
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 2.6e-73 278.9 168 82.1
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 3.4e-73 278.5 165 83.0
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 5.9e-73 277.7 167 80.2
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 5.9e-73 277.7 167 80.2
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 2.2e-72 275.8 167 78.4
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 2.9e-72 275.4 167 77.8
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 2.9e-72 275.4 167 78.4
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 3.8e-72 275.0 167 79.6
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.4e-71 273.1 167 79.0
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 7.2e-71 270.8 167 76.6
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.2e-70 270.0 161 80.7
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 6.1e-70 267.7 165 78.2
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 3.0e-69 265.4 164 78.0
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 5.1e-69 264.6 167 77.8
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 6.7e-69 264.2 168 76.8
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 2.0e-68 262.7 165 74.5
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 9.7e-68 260.4 202 65.3
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.1e-66 256.9 163 74.8
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.1e-66 256.9 154 80.5
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.1e-66 256.9 154 80.5
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.4e-66 255.8 166 74.1
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 7.0e-66 254.2 162 72.8
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 7.0e-66 254.2 162 72.8
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 7.0e-66 254.2 164 72.0
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.5e-65 251.9 162 74.7
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 3.5e-65 251.9 162 74.7
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 4.5e-65 251.5 168 68.5
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 4.5e-65 251.5 183 68.9
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 5.9e-65 251.1 164 72.6
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 5.9e-65 251.1 158 77.2
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 2.9e-64 248.8 168 72.6
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.0e-64 248.1 162 73.5
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.4e-63 246.5 168 71.4
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.9e-63 246.1 154 77.9
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 4.2e-63 245.0 168 71.4
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 7.2e-63 244.2 166 70.5
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.2e-62 243.4 163 70.6
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.7e-62 242.3 163 70.6
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 3.6e-62 241.9 168 67.9
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 6.1e-62 241.1 162 69.8
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.4e-61 240.0 162 69.1
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 3.9e-61 238.4 167 71.3
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 3.9e-61 238.4 162 68.5
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.1e-60 236.9 166 68.1
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.1e-60 236.9 163 71.2
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.3e-60 235.3 165 66.1
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.3e-59 233.4 167 68.3
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 2.2e-59 232.6 179 63.7
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.8e-58 229.6 154 72.1
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 1.8e-58 229.6 167 67.7
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 2.4e-58 229.2 150 74.0
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.4e-58 229.2 154 72.7
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 4.1e-58 228.4 166 66.3
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 7.0e-58 227.6 166 65.7
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 9.1e-58 227.3 162 66.7
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 1.6e-57 226.5 166 65.1
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 2.0e-57 226.1 165 66.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 2.0e-57 226.1 163 66.3
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-57 225.7 167 67.1
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 2.6e-57 225.7 166 65.7
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 3.5e-57 225.3 166 66.3
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 5.9e-57 224.6 167 64.1
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 2.9e-56 222.2 165 67.3
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.1e-55 220.3 163 68.7
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 1.9e-55 219.5 165 64.8
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 1.9e-55 219.5 165 64.8
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 3.2e-55 218.8 162 65.4
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 3.2e-55 218.8 162 65.4
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 3.2e-55 218.8 162 65.4
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 3.2e-55 218.8 168 64.9
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 9.4e-55 217.2 162 64.2
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 1.2e-54 216.9 164 63.4
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.6e-54 216.5 164 66.5
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 2.1e-54 216.1 162 65.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 2.7e-54 215.7 163 65.0
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 2.7e-54 215.7 163 65.0
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 2.7e-54 215.7 162 64.2
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 4.7e-54 214.9 166 63.9
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.8e-53 213.0 162 63.6
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 3.0e-53 212.2 162 64.2
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 4.0e-53 211.8 163 61.3
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.2e-52 210.3 167 63.5
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 2.0e-52 209.5 165 64.2
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 2.0e-52 209.5 165 64.2
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.3e-51 206.8 170 60.6
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 2.8e-51 205.7 128 78.9
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.1e-50 203.8 124 79.0
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 1.8e-50 203.0 163 61.3
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 2.0e-49 199.5 167 58.7
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.0e-49 199.5 152 67.8
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.2e-44 183.7 167 57.5
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 4.8e-43 178.3 167 54.5
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 8.3e-43 177.6 183 49.7
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 3.1e-42 175.6 183 50.3
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.2e-41 173.7 114 69.3
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.6e-38 162.2 170 45.9
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-34 149.4 180 42.2
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-33 146.7 165 46.7
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-31 139.0 181 44.2
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-31 138.3 177 46.3
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 9.5e-31 137.5 178 47.2
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-29 133.7 186 41.4
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 2.3e-29 132.9 101 59.4
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-28 129.4 175 46.9
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-26 123.6 166 45.8
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.4e-26 123.6 116 52.6
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-26 123.2 185 40.5
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 1.6e-25 120.2 112 57.1
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 7.8e-25 117.9 174 37.9
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 8.6e-24 114.4 108 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 3.3e-23 112.5 137 39.4
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.2e-22 110.5 67 73.1
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-22 110.2 170 40.6
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 3.6e-22 109.0 70 74.3
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.1e-21 107.5 138 41.3
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-21 107.1 174 36.2
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-21 107.1 136 41.2
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 6.8e-21 104.8 165 38.2
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 8.9e-21 104.4 75 68.0
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 3.4e-20 102.4 164 35.4
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 1.7e-19 100.1 161 37.9
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 8.3e-19 97.8 162 34.0
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 1.1e-18 97.4 71 73.2
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 7.0e-18 94.7 169 36.1
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 4.6e-17 92.0 181 33.1
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.6e-17 92.0 151 33.8
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 3.9e-16 89.0 166 32.5
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.6e-16 88.2 110 44.5
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 1.5e-15 87.0 173 34.1
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-15 86.3 166 31.9
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-15 85.9 166 30.7
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 2.8e-14 82.8 112 46.4
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-13 80.1 172 32.0
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 3.1e-13 79.3 43 83.7
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-13 79.0 180 29.4
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-12 76.3 131 31.3
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 7.5e-12 74.7 158 28.5
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-11 73.6 146 32.2
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 3.7e-11 72.4 188 29.8
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-10 70.1 126 34.1
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 5.4e-10 68.6 132 34.1
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-09 65.9 173 28.3
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-08 64.3 180 28.3
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-08 63.9 181 28.7
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-08 62.8 126 31.0
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 1.9e-07 60.1 110 34.5
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 7.3e-07 58.2 64 48.4
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 2.1e-06 56.6 128 28.9
Dinv01344 Davidia involucrata HOM05D065005 ORTHO05D005623 3.6e-06 55.8 31 77.4


User provided reference genes

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