Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 1.5e-116 423.3 285 100.0
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 5.0e-101 371.7 285 87.0
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 5.0e-101 371.7 285 87.0
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 1.1e-100 370.5 285 87.7
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 1.2e-99 367.1 285 87.7
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 6.2e-99 364.8 284 85.9
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 1.1e-98 364.0 285 86.7
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 2.3e-98 362.8 285 82.5
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 6.8e-98 361.3 285 77.2
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 2.9e-96 355.9 285 75.4
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 3.7e-96 355.5 285 83.2
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 6.4e-96 354.8 282 76.2
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 3.2e-95 352.4 284 84.9
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 4.1e-95 352.1 284 84.2
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 5.4e-95 351.7 285 84.6
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 1.2e-94 350.5 285 81.8
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 3.5e-94 349.0 283 83.0
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 6.0e-94 348.2 285 84.2
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.0e-93 347.4 285 83.2
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 3.9e-93 345.5 285 81.8
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 3.9e-93 345.5 285 81.4
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 6.6e-93 344.7 284 83.8
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 6.6e-93 344.7 285 81.1
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 8.6e-93 344.4 285 84.6
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 1.5e-92 343.6 283 83.7
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 1.5e-92 343.6 283 82.0
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 7.3e-92 341.3 285 79.3
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 1.6e-91 340.1 284 80.3
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 1.6e-91 340.1 284 80.3
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 1.6e-91 340.1 282 74.1
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 1.6e-91 340.1 285 82.1
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 2.1e-91 339.7 286 73.8
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 2.8e-91 339.3 282 74.1
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 2.8e-91 339.3 282 73.8
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 2.8e-91 339.3 282 73.8
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 2.8e-91 339.3 282 79.4
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 4.7e-91 338.6 282 71.6
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 4.7e-91 338.6 282 71.6
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 8.1e-91 337.8 284 79.9
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 1.2e-89 334.0 285 62.5
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 1.2e-89 334.0 282 80.1
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 1.5e-89 333.6 285 81.1
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.5e-89 333.6 285 78.9
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 5.8e-89 331.6 285 79.3
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 5.8e-89 331.6 285 79.3
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 1.7e-88 330.1 283 64.0
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 2.2e-88 329.7 285 75.8
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 2.2e-88 329.7 285 79.3
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 2.4e-87 326.2 285 78.2
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 9.2e-87 324.3 283 78.1
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 1.6e-86 323.6 283 79.2
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 1.6e-86 323.6 283 80.6
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 2.7e-86 322.8 283 74.6
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 4.6e-86 322.0 285 77.2
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 1.3e-85 320.5 284 78.2
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 1.7e-85 320.1 283 78.8
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 2.3e-85 319.7 284 78.5
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 2.3e-85 319.7 284 78.5
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 3.0e-85 319.3 286 76.6
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 5.1e-85 318.5 285 74.0
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 6.6e-85 318.2 343 64.1
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 6.6e-85 318.2 282 69.9
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 6.6e-85 318.2 283 79.2
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 1.9e-84 316.6 285 79.3
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 7.3e-84 314.7 285 76.5
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 1.2e-83 313.9 286 76.6
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 2.1e-83 313.2 281 77.9
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 2.8e-83 312.8 283 78.1
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 6.2e-83 311.6 282 76.2
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 1.1e-82 310.8 283 71.0
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 3.1e-82 309.3 282 78.0
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 2.0e-81 306.6 284 75.0
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 3.4e-81 305.8 286 74.1
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 5.8e-81 305.1 280 67.9
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 7.6e-81 304.7 287 75.6
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 9.9e-81 304.3 285 73.3
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.7e-80 303.5 280 74.6
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 2.9e-80 302.8 282 74.1
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 4.9e-80 302.0 286 73.1
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 1.9e-79 300.1 283 73.5
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 3.2e-79 299.3 285 74.7
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 3.2e-79 299.3 282 75.9
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 4.2e-79 298.9 282 75.5
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 4.2e-79 298.9 282 75.5
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 4.2e-79 298.9 282 75.5
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 4.2e-79 298.9 282 75.5
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 4.2e-79 298.9 280 73.6
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 4.2e-79 298.9 282 74.8
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 5.4e-79 298.5 282 75.2
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 5.4e-79 298.5 282 75.2
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 7.1e-79 298.1 285 71.6
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 7.1e-79 298.1 285 71.6
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 1.3e-77 293.9 285 73.7
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 6.6e-77 291.6 286 72.7
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 6.6e-77 291.6 282 72.7
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 8.7e-77 291.2 285 72.3
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 4.0e-74 282.3 285 71.6
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 5.8e-73 278.5 283 71.4
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 2.1e-70 270.0 284 66.2
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 7.8e-70 268.1 281 68.7
Actinidia21879 Actinidia chinensis HOM05D003502 ORTHO05D004250 2.3e-69 266.5 222 79.7
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 2.3e-69 266.5 281 68.3
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 8.7e-69 264.6 284 60.2
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 8.7e-69 264.6 284 60.2
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 1.9e-68 263.5 282 69.1
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 1.3e-67 260.8 277 70.8
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 3.8e-64 249.2 282 68.1
Peaxi162Scf00745g00858 Petunia axillaris HOM05D003502 ORTHO05D010567 1.3e-53 214.2 129 87.6
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 3.0e-53 213.0 284 63.0
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 5.1e-53 212.2 282 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 5.6e-52 208.8 287 58.9
ECA248G3707 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.4e-50 204.1 250 68.0
PSO339G1860 Papaver somniferum HOM05D003502 ORTHO05D010567 9.0e-50 201.4 126 79.4
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 7.6e-49 198.4 281 44.1
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 4.9e-48 195.7 285 58.9
Psat6g094840 Pisum sativum HOM05D003502 ORTHO05D004250 8.4e-48 194.9 130 77.7
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 1.2e-46 191.0 203 76.8
Psat4g073680 Pisum sativum HOM05D003502 ORTHO05D004250 3.9e-45 186.0 129 74.4
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 5.1e-45 185.7 304 35.9
COL.COLO4_28859 Corchorus olitorius HOM05D003502 ORTHO05D004250 6.3e-43 178.7 202 64.9
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 7.7e-41 171.8 280 40.0
Lsat_1_v5_gn_6_110460 Lactuca sativa HOM05D003502 ORTHO05D004250 9.1e-34 148.3 129 64.3
SHI02505 Sapria himalayana HOM05D003502 ORTHO05D004250 1.2e-33 147.9 102 70.6
Lj3A923T57 Lonicera japonica HOM05D003502 ORTHO05D004250 1.4e-31 141.0 89 86.5
PGSC0003DMG400000538 Solanum tuberosum HOM05D003502 ORTHO05D004250 5.5e-31 139.0 82 82.9
Actinidia21650 Actinidia chinensis HOM05D003502 ORTHO05D004250 1.8e-29 134.0 284 44.0
Cpa.g.c44189 Carica papaya HOM05D003502 ORTHO05D004250 2.3e-29 133.7 161 46.6
HanXRQChr16g0510941 Helianthus annuus HOM05D003502 ORTHO05D004250 2.3e-29 133.7 94 70.2
Pp3c5_3010 Physcomitrium patens HOM05D003502 ORTHO05D004250 4.4e-28 129.4 212 40.1
Cpa.g.c41347 Carica papaya HOM05D003502 ORTHO05D004250 1.4e-23 114.4 81 67.9
PRCOL_00004072 Prasinoderma coloniale HOM05D003502 ORTHO05D004250 1.4e-23 114.4 280 49.3
CsaV3_5G005300 Cucumis sativus L. HOM05D003502 ORTHO05D010567 1.6e-22 110.9 83 68.7
Solyc03g096890.3 Solanum lycopersicum HOM05D003502 ORTHO05D004250 1.0e-21 108.2 72 73.6
C06p05280 Brassica napus HOM05D008752 ORTHO05D010567 1.4e-21 107.8 81 66.7
SHI02509 Sapria himalayana HOM05D003502 ORTHO05D010567 1.8e-21 107.5 83 69.9
BcaC08g43206 Brassica carinata HOM05D003502 ORTHO05D010567 3.3e-20 103.2 81 64.2
HPP92_008321 Vanilla planifolia HOM05D003502 ORTHO05D004250 3.3e-20 103.2 87 60.9
HanXRQChr17g0543411 Helianthus annuus HOM05D003502 ORTHO05D010567 2.2e-19 100.5 86 55.8
Peaxi162Scf00745g00859 Petunia axillaris HOM05D003502 ORTHO05D004250 4.8e-19 99.4 65 76.9
FvH4_5g14110 Fragaria vesca HOM05D003502 ORTHO05D004250 9.1e-18 95.1 66 71.2
AUR62006364 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.0e-17 94.0 133 49.6
Psat6g094760 Pisum sativum HOM05D003502 ORTHO05D004250 3.5e-17 93.2 65 72.3
BcaC08g43210 Brassica carinata HOM05D003502 ORTHO05D010567 4.5e-17 92.8 66 68.2
BolC6t35637H Brassica oleracea HOM05D008752 ORTHO05D010567 4.5e-17 92.8 66 68.2
BraA06t23538Z Brassica rapa HOM05D008752 ORTHO05D010567 4.5e-17 92.8 66 68.2
A06p03270 Brassica napus HOM05D008752 ORTHO05D010567 1.7e-16 90.9 66 66.7
C06p05300 Brassica napus HOM05D003502 ORTHO05D010567 5.0e-16 89.4 65 66.2
Cre09.g412750 Chlamydomonas reinhardtii HOM05D003502 ORTHO05D004250 2.5e-15 87.0 212 42.5
MBI10_g40701_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 4.2e-15 86.3 51 84.3
MBI19_g33447_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 8.0e-14 82.0 65 67.7
AUR62008741 Chenopodium quinoa HOM05D003502 ORTHO05D004250 4.4e-12 76.3 131 36.6
BolC6t35638H Brassica oleracea HOM05D003502 ORTHO05D010567 4.8e-11 72.8 81 51.9
ECA247G1432 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.8e-10 70.9 197 32.0
Lj3C923G18 Lonicera japonica HOM05D003502 ORTHO05D004250 2.4e-10 70.5 43 79.1
CBR_g46859 Chara braunii HOM05D003502 ORTHO05D004250 1.7e-08 64.3 104 33.7
TAR636G1665 Trochodendron aralioides HOM05D001096 ORTHO05D004250 2.9e-08 63.5 122 45.1


User provided reference genes

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