Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.7e-54 214.2 142 100.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-27 127.1 113 60.2
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 7.0e-27 124.4 107 63.6
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.8e-25 118.6 116 55.2
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 5.0e-25 118.2 114 58.8
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 3.2e-24 115.5 108 57.4
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 4.2e-24 115.2 116 56.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 7.2e-24 114.4 106 56.6
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 9.4e-24 114.0 144 47.9
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.2e-23 113.6 116 54.3
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 2.1e-23 112.8 108 56.5
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 2.1e-23 112.8 116 54.3
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.1e-23 112.8 125 52.0
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.7e-23 112.5 116 54.3
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 4.7e-23 111.7 108 58.3
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 4.7e-23 111.7 108 54.6
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 8.0e-23 110.9 108 63.0
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 8.0e-23 110.9 116 52.6
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-22 109.8 116 53.4
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.8e-22 109.8 116 52.6
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.8e-22 109.8 117 54.7
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.3e-22 109.4 114 51.8
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 3.0e-22 109.0 116 53.4
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 3.0e-22 109.0 118 54.2
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.2e-22 108.2 108 54.6
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 8.8e-22 107.5 119 52.9
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.5e-21 106.7 113 53.1
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.5e-21 106.7 101 61.4
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.0e-21 106.3 116 50.9
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.0e-21 106.3 116 50.9
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.6e-21 105.9 135 48.1
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.6e-21 105.9 97 57.7
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 4.4e-21 105.1 116 50.9
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 4.4e-21 105.1 101 61.4
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 5.7e-21 104.8 116 51.7
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 7.5e-21 104.4 117 53.0
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 9.8e-21 104.0 110 53.6
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.3e-20 103.6 116 50.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.3e-20 103.6 116 51.7
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.3e-20 103.6 121 49.6
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.7e-20 103.2 121 49.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 2.2e-20 102.8 121 48.8
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 3.7e-20 102.1 118 51.7
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 4.8e-20 101.7 120 70.8
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 4.8e-20 101.7 120 70.8
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 8.3e-20 100.9 116 51.7
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 8.3e-20 100.9 116 52.6
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.1e-19 100.5 101 60.4
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.4e-19 100.1 121 52.1
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.4e-19 100.1 116 53.4
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.4e-19 100.1 109 53.2
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.4e-19 100.1 108 54.6
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.8e-19 99.8 116 51.7
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 4.1e-19 98.6 118 51.7
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 5.4e-19 98.2 116 47.4
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 7.0e-19 97.8 116 61.2
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 9.1e-19 97.4 99 54.5
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.6e-18 96.7 120 50.0
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.7e-18 95.9 114 50.9
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.5e-18 95.5 114 50.9
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 7.7e-18 94.4 114 50.0
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 7.7e-18 94.4 119 48.7
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.0e-17 94.0 113 52.2
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.0e-17 94.0 119 52.1
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-17 93.6 139 43.2
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.3e-17 93.6 139 43.2
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.3e-17 92.8 111 51.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.9e-17 92.4 116 48.3
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 3.8e-17 92.0 142 43.7
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 3.8e-17 92.0 114 49.1
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.8e-17 92.0 114 49.1
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 3.8e-17 92.0 139 42.4
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 3.8e-17 92.0 118 50.0
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.0e-17 91.7 52 82.7
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 8.6e-17 90.9 142 43.7
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 8.6e-17 90.9 52 84.6
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 8.6e-17 90.9 52 84.6
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.1e-16 90.5 52 84.6
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 1.1e-16 90.5 123 59.3
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.9e-16 89.7 114 48.2
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 2.5e-16 89.4 142 45.8
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 3.3e-16 89.0 52 86.5
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 4.2e-16 88.6 98 52.0
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.5e-16 88.2 52 80.8
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 7.2e-16 87.8 49 87.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 7.2e-16 87.8 52 82.7
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.2e-15 87.0 52 80.8
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.2e-15 87.0 116 45.7
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.6e-15 86.7 52 82.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 3.6e-15 85.5 128 50.0
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 3.6e-15 85.5 52 78.8
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 4.7e-15 85.1 113 51.3
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 6.1e-15 84.7 49 85.7
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 6.1e-15 84.7 50 82.0
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 6.1e-15 84.7 112 44.6
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 8.0e-15 84.3 52 80.8
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 1.0e-14 84.0 116 46.6
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.8e-14 83.2 50 78.0
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.8e-14 83.2 124 46.8
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.8e-14 83.2 116 69.8
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 2.3e-14 82.8 153 39.2
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 5.2e-14 81.6 49 75.5
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 6.8e-14 81.3 50 76.0
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 8.9e-14 80.9 123 40.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 2.0e-13 79.7 122 45.9
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 2.0e-13 79.7 48 75.0
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 2.6e-13 79.3 52 78.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.7e-13 78.2 48 77.1
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 7.5e-13 77.8 52 75.0
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 9.8e-13 77.4 52 73.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 9.8e-13 77.4 52 73.1
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 9.8e-13 77.4 52 73.1
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.3e-12 77.0 49 75.5
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.8e-12 75.9 45 82.2
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 2.8e-12 75.9 118 44.9
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 3.7e-12 75.5 49 75.5
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.7e-12 75.5 49 75.5
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 8.3e-12 74.3 48 68.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 8.3e-12 74.3 103 40.8
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 1.1e-11 73.9 47 70.2
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.4e-11 73.6 121 38.8
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 2.4e-11 72.8 49 73.5
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 2.7e-10 69.3 48 64.6


User provided reference genes

Program Settings