Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 2.9e-66 255.4 155 100.0
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 5.1e-55 218.0 156 87.8
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 8.6e-55 217.2 130 90.8
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 8.6e-55 217.2 130 90.8
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.1e-54 216.9 125 92.0
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 4.3e-54 214.9 127 89.8
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 4.7e-53 211.5 157 87.3
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 4.7e-53 211.5 126 86.5
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 8.1e-53 210.7 127 89.8
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.1e-52 210.3 122 89.3
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.1e-52 210.3 125 88.8
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.4e-52 209.1 124 89.5
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.4e-52 209.1 124 89.5
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 3.1e-52 208.8 121 90.1
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 4.0e-52 208.4 150 87.3
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 8.9e-52 207.2 153 85.6
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.2e-51 206.8 124 88.7
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.2e-51 206.8 124 88.7
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 1.2e-51 206.8 121 89.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 1.2e-51 206.8 121 88.4
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 1.2e-51 206.8 154 85.7
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.5e-51 206.5 151 81.5
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.5e-51 206.5 148 89.2
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.6e-51 205.7 150 83.3
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 3.4e-51 205.3 123 88.6
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 4.4e-51 204.9 124 87.9
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 5.8e-51 204.5 153 85.0
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 7.6e-51 204.1 120 89.2
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.3e-50 203.4 153 81.0
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.3e-50 203.4 121 87.6
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.7e-50 203.0 163 72.4
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-50 203.0 124 87.1
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.9e-50 202.2 125 86.4
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 2.9e-50 202.2 123 86.2
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.9e-50 202.2 150 85.3
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.8e-50 201.8 124 87.1
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 4.9e-50 201.4 123 85.4
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.9e-50 201.4 124 86.3
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 8.4e-50 200.7 124 85.5
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.4e-49 199.9 123 84.6
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.4e-49 199.9 154 83.1
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 2.4e-49 199.1 154 81.2
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 3.2e-49 198.7 151 82.1
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 3.2e-49 198.7 153 77.1
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 3.2e-49 198.7 150 81.3
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 3.2e-49 198.7 150 81.3
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 3.2e-49 198.7 121 86.0
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 4.2e-49 198.4 150 81.3
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 5.4e-49 198.0 158 84.2
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 5.4e-49 198.0 156 79.5
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 5.4e-49 198.0 154 81.2
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 7.1e-49 197.6 127 80.3
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 7.1e-49 197.6 151 83.4
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 9.2e-49 197.2 157 82.8
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 9.2e-49 197.2 125 84.8
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.2e-48 196.8 125 85.6
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.2e-48 196.8 124 83.9
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.6e-48 196.4 152 78.3
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 2.1e-48 196.1 156 78.8
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 2.1e-48 196.1 122 84.4
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 2.7e-48 195.7 149 81.9
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 3.5e-48 195.3 153 75.8
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 4.6e-48 194.9 153 73.9
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 6.0e-48 194.5 125 84.0
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 7.8e-48 194.1 154 81.8
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 1.0e-47 193.7 154 81.2
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.0e-47 193.7 126 83.3
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.3e-47 193.4 151 82.8
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.7e-47 193.0 122 80.3
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.3e-47 192.6 123 78.9
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 6.6e-47 191.0 152 77.6
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 6.6e-47 191.0 152 78.3
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 6.6e-47 191.0 154 82.5
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 6.6e-47 191.0 122 80.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 6.6e-47 191.0 154 81.8
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 8.7e-47 190.7 122 77.9
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 8.7e-47 190.7 123 82.9
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 8.7e-47 190.7 119 83.2
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.5e-46 189.9 122 78.7
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.5e-46 189.9 122 78.7
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.5e-46 189.9 122 78.7
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.5e-46 189.9 122 78.7
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 1.9e-46 189.5 127 78.0
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 2.5e-46 189.1 122 78.7
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 2.5e-46 189.1 122 79.5
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.3e-46 188.7 122 77.9
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.3e-46 188.7 122 78.7
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 7.3e-46 187.6 122 77.0
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 9.6e-46 187.2 126 81.7
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 1.3e-45 186.8 125 80.0
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 1.6e-45 186.4 123 77.2
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.1e-45 186.0 122 77.0
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 2.8e-45 185.7 126 77.8
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 8.1e-45 184.1 157 75.2
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 3.1e-44 182.2 131 73.3
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 4.0e-44 181.8 123 78.0
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 4.0e-44 181.8 154 76.6
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.2e-43 180.3 152 80.9
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 1.5e-43 179.9 119 79.0
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.5e-43 179.9 119 79.0
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.5e-43 179.9 119 79.0
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-43 179.9 126 78.6
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 3.4e-43 178.7 119 78.2
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.7e-42 176.4 119 77.3
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.7e-42 176.4 126 71.4
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 2.2e-42 176.0 122 74.6
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 1.4e-41 173.3 116 78.4
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 4.2e-41 171.8 203 53.7
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 4.2e-41 171.8 157 61.1
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 9.3e-41 170.6 127 68.5
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.2e-40 170.2 122 72.1
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 2.7e-40 169.1 195 54.4
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.3e-39 166.8 123 69.9
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 5.1e-39 164.9 98 87.8
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 8.7e-39 164.1 151 62.3
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 2.5e-38 162.5 125 72.0
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 4.3e-38 161.8 102 83.3
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 4.3e-38 161.8 128 67.2
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 7.3e-38 161.0 99 84.8
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.6e-37 159.8 108 77.8
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 3.6e-37 158.7 123 69.1
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 6.9e-36 154.5 96 85.4
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 2.9e-34 149.1 93 83.9
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.2e-32 143.7 120 62.5
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 2.1e-32 142.9 123 60.2
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.5e-32 142.1 127 58.3
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 4.6e-32 141.7 92 83.7
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 4.6e-32 141.7 125 58.4
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.5e-30 136.7 127 56.7
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.6e-29 133.3 121 56.2
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 3.9e-23 112.1 93 63.4
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 3.9e-23 112.1 93 63.4
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 3.9e-23 112.1 79 73.4
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.1e-23 111.7 101 63.4
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.0e-20 102.1 95 64.2
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.2e-19 100.5 67 74.6
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.3e-13 80.5 51 74.5
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 5.9e-11 71.6 84 56.0
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 5.9e-11 71.6 71 62.0
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 5.9e-11 71.6 84 56.0
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 3.8e-10 68.9 49 67.3


User provided reference genes

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