Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G1296 Trochodendron aralioides HOM05D000198 ORTHO05D414088 6.0e-177 624.0 303 100.0
TAR626G1240 Trochodendron aralioides HOM05D000198 ORTHO05D005702 1.4e-21 107.8 70 80.0
Nn8g40255 Nelumbo nucifera HOM05D000198 ORTHO05D005702 1.9e-13 80.9 71 66.2
Dinv42461 Davidia involucrata HOM05D000198 ORTHO05D005702 2.1e-12 77.4 65 64.6
Hma1.2p1_0334F.1_g128390 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 2.7e-12 77.0 75 57.3
Rhsim06G0244300 Rhododendron simsii HOM05D000198 ORTHO05D005702 1.1e-10 71.6 81 54.3
Actinidia12753 Actinidia chinensis HOM05D000198 ORTHO05D005702 1.5e-10 71.2 77 62.3
TWI38G0157 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 2.0e-10 70.9 43 74.4
A07p44510 Brassica napus HOM05D000198 ORTHO05D005702 3.3e-10 70.1 66 54.5
BraA07t31961Z Brassica rapa HOM05D000198 ORTHO05D005702 3.3e-10 70.1 66 54.5
Glyma.15G263500 Glycine max HOM05D000198 ORTHO05D005702 4.4e-10 69.7 78 50.0
Phvul.005G048150 Phaseolus vulgaris HOM05D000198 ORTHO05D005702 9.7e-10 68.6 70 54.3
Ciclev10004713m.g Citrus clementina HOM05D000198 ORTHO05D005702 1.3e-09 68.2 68 50.0
Cc05_g16560 Coffea canephora HOM05D000198 ORTHO05D005702 1.7e-09 67.8 57 56.1
GSVIVG01036719001 Vitis vinifera HOM05D000198 ORTHO05D005702 1.7e-09 67.8 64 57.8
Migut.M01503 Erythranthe guttata HOM05D000198 ORTHO05D005702 2.2e-09 67.4 45 68.9
CsaV3_6G013440 Cucumis sativus L. HOM05D000198 ORTHO05D005702 2.8e-09 67.0 62 58.1
MD05G1238300 Malus domestica HOM05D000198 ORTHO05D005702 2.8e-09 67.0 67 56.7
AL2G40050 Arabidopsis lyrata HOM05D000198 ORTHO05D005702 4.8e-09 66.2 69 53.6
BcaC08g47505 Brassica carinata HOM05D000198 ORTHO05D005702 4.8e-09 66.2 67 53.7
MELO3C019622.2 Cucumis melo HOM05D000198 ORTHO05D005702 4.8e-09 66.2 62 58.1
PGR031G3164 Punica granatum HOM05D000198 ORTHO05D005702 4.8e-09 66.2 72 55.6
Eucgr.F04474 Eucalyptus grandis HOM05D000198 ORTHO05D005702 6.3e-09 65.9 41 73.2
Lalb_Chr20g0108421 Lupinus albus HOM05D000198 ORTHO05D005702 6.3e-09 65.9 48 62.5
Atru.chr1.55 Acer truncatum HOM05D000198 ORTHO05D005702 8.2e-09 65.5 70 50.0
arahy.Tifrunner.gnm1.ann1.15VWWC Arachis hypogaea HOM05D000198 ORTHO05D005702 8.2e-09 65.5 70 50.0
PSO384G4748 Papaver somniferum HOM05D000198 ORTHO05D005702 8.2e-09 65.5 57 56.1
RcHm_v2.0_Chr5g0023391 Rosa chinensis HOM05D000198 ORTHO05D005702 8.2e-09 65.5 60 56.7
Lsat_1_v5_gn_7_110980 Lactuca sativa HOM05D000198 ORTHO05D005702 1.1e-08 65.1 45 66.7
Sed0009726 Sechium edule HOM05D000198 ORTHO05D005702 1.1e-08 65.1 72 54.2
AT1G79440 Arabidopsis thaliana HOM05D000198 ORTHO05D005702 1.4e-08 64.7 66 53.0
C06p53340 Brassica napus HOM05D000198 ORTHO05D005702 1.4e-08 64.7 67 53.7
BolC6t40351H Brassica oleracea HOM05D000198 ORTHO05D005702 1.4e-08 64.7 67 53.7
Sc06g0002010 Simmondsia chinensis HOM05D000198 ORTHO05D005702 1.4e-08 64.7 66 54.5
Aqoxy1G01365 Aquilegia oxysepala HOM05D000198 ORTHO05D005702 2.4e-08 63.9 53 60.4
Glyma.08G163700 Glycine max HOM05D000198 ORTHO05D005702 2.4e-08 63.9 77 45.5
SGA_v2.0_scaffold7G03629 Striga asiatica HOM05D000198 ORTHO05D005702 2.4e-08 63.9 68 48.5
CiPaw.11G057000 Carya illinoinensis HOM05D000198 ORTHO05D005702 3.1e-08 63.5 41 73.2
Hund12032 Selenicereus undatus HOM05D000198 ORTHO05D005702 3.1e-08 63.5 71 56.3
arahy.Tifrunner.gnm1.ann1.D1NSDN Arachis hypogaea HOM05D000198 ORTHO05D005702 4.1e-08 63.2 70 48.6
MSTRG.7092 Avicennia marina HOM05D000198 ORTHO05D005702 7.0e-08 62.4 74 47.3
CSS0002476 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 7.0e-08 62.4 42 69.0
CSS0048947 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 7.0e-08 62.4 42 69.0
Ca_03179_v3 Cicer arietinum L. HOM05D000198 ORTHO05D005702 7.0e-08 62.4 64 51.6
Thhalv10018394m.g Eutrema salsugineum HOM05D000198 ORTHO05D005702 7.0e-08 62.4 69 50.7
Sp5g34490 Schrenkiella parvula HOM05D000198 ORTHO05D005702 7.0e-08 62.4 69 50.7
unitig_26.g10057 Utricularia gibba HOM05D000198 ORTHO05D005702 9.1e-08 62.0 69 47.8
Carub.0002s2630 Capsella rubella HOM05D000198 ORTHO05D005702 1.2e-07 61.6 66 51.5
THA.LOC104808138 Tarenaya hassleriana HOM05D000198 ORTHO05D005702 1.2e-07 61.6 68 48.5
CARHR073100 Cardamine hirsuta HOM05D000198 ORTHO05D005702 2.0e-07 60.8 69 50.7
Haze_07763 Corylus avellana HOM05D000198 ORTHO05D005702 2.6e-07 60.5 49 63.3
Solyc09g090700.1 Solanum lycopersicum HOM05D000198 ORTHO05D005702 2.6e-07 60.5 66 53.0
PGSC0003DMG400017144 Solanum tuberosum HOM05D000198 ORTHO05D005702 2.6e-07 60.5 40 70.0
Psat1g015240 Pisum sativum HOM05D000198 ORTHO05D005702 3.4e-07 60.1 42 61.9
Sopen09g033640 Solanum pennellii HOM05D000198 ORTHO05D005702 3.4e-07 60.1 38 71.1
TPR.G28436 Trifolium pratense HOM05D000198 ORTHO05D005702 4.5e-07 59.7 41 63.4
HanXRQChr11g0335851 Helianthus annuus HOM05D000198 ORTHO05D005702 5.9e-07 59.3 39 64.1
CANSAT56G4341 Cannabis sativa HOM05D000198 ORTHO05D005702 7.7e-07 58.9 65 47.7
CAN.G524.27 Capsicum annuum HOM05D000198 ORTHO05D005702 7.7e-07 58.9 40 65.0
Cfa019371 Carpinus fangiana HOM05D000198 ORTHO05D005702 7.7e-07 58.9 51 60.8
Prupe.4G128100 Prunus persica HOM05D000198 ORTHO05D005702 7.7e-07 58.9 36 72.2
FvH4_3g14080 Fragaria vesca HOM05D000198 ORTHO05D005702 1.0e-06 58.5 45 60.0
FAN16G0643 Fragaria x ananassa HOM05D000198 ORTHO05D005702 1.0e-06 58.5 45 60.0
FAN21G2180 Fragaria x ananassa HOM05D000198 ORTHO05D005702 1.0e-06 58.5 45 60.0
FAN25G1729 Fragaria x ananassa HOM05D000198 ORTHO05D005702 1.0e-06 58.5 45 60.0
HanXRQChr07g0190721 Helianthus annuus HOM05D000198 ORTHO05D005702 1.0e-06 58.5 40 65.0
Medtr2g067660 Medicago truncatula HOM05D000198 ORTHO05D005702 1.0e-06 58.5 38 68.4
Lj3g0005942 Lotus japonicus HOM05D000198 ORTHO05D005702 1.3e-06 58.2 45 57.8
GSVIVG01036720001 Vitis vinifera HOM05D000198 ORTHO05D005702 1.3e-06 58.2 36 72.2
Cpa.g.sc32.93 Carica papaya HOM05D000198 ORTHO05D005702 1.7e-06 57.8 38 68.4
Lalb_Chr25g0284351 Lupinus albus HOM05D000198 ORTHO05D005702 1.7e-06 57.8 36 69.4
Nitab4.5_0013063g0020 Nicotiana tabacum HOM05D000198 ORTHO05D005702 1.7e-06 57.8 40 65.0
HanXRQChr11g0335841 Helianthus annuus HOM05D000198 ORTHO05D005702 2.2e-06 57.4 38 63.2
HanXRQChr13g0419821 Helianthus annuus HOM05D000198 ORTHO05D005702 2.2e-06 57.4 40 62.5
MD10G1216600 Malus domestica HOM05D000198 ORTHO05D005702 2.2e-06 57.4 38 63.2
SalBow8G0624 Salvia bowleyana HOM05D000198 ORTHO05D005702 2.2e-06 57.4 43 60.5
Manes.16G048100 Manihot esculenta HOM05D000198 ORTHO05D005702 2.9e-06 57.0 39 66.7
Os02g0173900 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D005702 2.9e-06 57.0 70 44.3
GSVIVG01036721001 Vitis vinifera HOM05D000198 ORTHO05D005702 2.9e-06 57.0 46 58.7
CANSAT56G2629 Cannabis sativa HOM05D000198 ORTHO05D005702 3.8e-06 56.6 65 46.2
Nitab4.5_0000194g0150 Nicotiana tabacum HOM05D000198 ORTHO05D005702 3.8e-06 56.6 40 62.5
Peaxi162Scf00153g00189 Petunia axillaris HOM05D000198 ORTHO05D005702 3.8e-06 56.6 40 65.0
HanXRQChr07g0190661 Helianthus annuus HOM05D000198 ORTHO05D005702 5.0e-06 56.2 41 61.0
PSO782G3257 Papaver somniferum HOM05D000198 ORTHO05D005702 5.0e-06 56.2 38 68.4
FAN11G1157 Fragaria x ananassa HOM05D000198 ORTHO05D005702 8.5e-06 55.5 39 61.5


User provided reference genes

Program Settings