Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 5.1e-199 697.6 360 100.0
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 5.8e-171 604.4 340 92.1
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 2.1e-144 516.2 347 76.4
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.3e-143 512.7 347 75.8
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 8.8e-143 510.8 336 76.8
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 4.1e-140 501.9 340 74.7
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 3.8e-138 495.4 324 77.8
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 1.9e-137 493.0 341 72.1
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.5e-137 492.7 348 73.0
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 1.2e-136 490.3 342 72.5
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 2.7e-136 489.2 346 71.4
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 4.7e-136 488.4 319 75.5
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 4.7e-136 488.4 336 72.3
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 1.8e-135 486.5 341 73.3
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 3.0e-135 485.7 343 71.7
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 5.2e-135 485.0 319 74.6
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 5.2e-135 485.0 341 72.1
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 1.1e-134 483.8 341 73.0
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.0e-134 483.0 340 72.4
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 4.4e-134 481.9 346 72.3
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 7.4e-134 481.1 345 71.3
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 2.2e-133 479.6 344 73.0
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 3.7e-133 478.8 344 70.9
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 4.8e-133 478.4 335 69.9
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 6.3e-133 478.0 324 73.8
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.4e-132 476.9 348 69.8
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.8e-132 476.5 319 75.5
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 2.4e-132 476.1 351 70.1
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 3.1e-132 475.7 339 72.6
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 3.1e-132 475.7 344 70.9
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 5.3e-132 474.9 339 70.8
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 5.3e-132 474.9 347 70.9
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 4.5e-131 471.9 337 68.5
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 4.5e-131 471.9 337 68.5
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 5.9e-131 471.5 341 70.4
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 5.9e-131 471.5 359 68.8
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.3e-130 470.3 341 68.3
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.3e-130 470.3 341 70.4
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.7e-130 469.9 348 69.3
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 1.7e-130 469.9 341 70.4
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 2.9e-130 469.2 341 68.6
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 3.8e-130 468.8 320 73.8
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 5.0e-130 468.4 341 70.1
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 5.0e-130 468.4 363 67.2
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 6.5e-130 468.0 341 70.1
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.5e-129 466.8 341 70.1
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.5e-129 466.1 360 67.2
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 7.2e-129 464.5 341 67.4
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 7.2e-129 464.5 336 71.7
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 9.4e-129 464.2 339 69.0
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 1.2e-128 463.8 340 70.6
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 1.6e-128 463.4 337 68.5
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 3.6e-128 462.2 341 68.0
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 1.4e-127 460.3 343 68.5
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 1.8e-127 459.9 320 70.9
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 1.8e-127 459.9 336 69.6
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.8e-127 459.9 341 68.6
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 3.0e-127 459.1 336 69.9
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 5.2e-127 458.4 335 68.1
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.4e-126 455.7 349 69.6
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 5.7e-126 454.9 342 69.3
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.7e-125 452.2 341 66.6
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 6.3e-125 451.4 340 70.3
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.1e-124 450.7 345 67.2
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 5.4e-124 448.4 341 63.9
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 7.0e-124 448.0 297 75.1
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.0e-124 448.0 340 66.2
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.6e-123 446.8 339 66.4
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 3.8e-122 442.2 341 66.9
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 1.1e-121 440.7 348 65.2
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 4.2e-121 438.7 317 66.9
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 9.4e-121 437.6 410 59.3
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.2e-120 437.2 343 66.5
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 3.6e-120 435.6 345 65.2
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.0e-119 434.1 337 63.2
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.0e-119 434.1 340 65.0
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.8e-119 433.3 451 54.3
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 2.3e-119 433.0 340 63.8
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 2.3e-119 433.0 340 63.5
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.3e-119 433.0 342 64.0
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 2.3e-119 433.0 318 66.7
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 4.0e-119 432.2 345 64.3
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 5.2e-119 431.8 335 64.2
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 6.8e-119 431.4 317 65.6
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 8.8e-119 431.0 317 66.2
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 8.8e-119 431.0 317 66.2
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 1.2e-118 430.6 318 66.0
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 1.2e-118 430.6 317 66.2
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 1.5e-118 430.3 317 65.9
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 2.0e-118 429.9 317 65.9
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 2.0e-118 429.9 321 65.7
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.3e-117 427.2 341 66.6
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 6.3e-117 424.9 319 66.8
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 4.1e-116 422.2 283 73.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 4.1e-116 422.2 308 68.2
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 1.5e-113 413.7 337 63.5
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 3.6e-112 409.1 336 62.8
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 2.0e-110 403.3 325 64.6
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 1.3e-109 400.6 352 60.5
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 1.7e-109 400.2 330 63.3
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 2.2e-109 399.8 317 63.1
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 5.4e-108 395.2 324 62.0
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 2.7e-107 392.9 317 62.1
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 2.7e-107 392.9 343 62.1
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 1.3e-106 390.6 317 62.5
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.6e-104 383.6 340 60.0
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 4.7e-104 382.1 340 61.5
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 7.5e-102 374.8 268 70.1
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 2.9e-101 372.9 283 65.7
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 7.8e-99 364.8 321 56.1
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 3.9e-98 362.5 318 59.7
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.6e-98 361.3 336 57.1
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.6e-98 361.3 336 57.1
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 4.0e-95 352.4 340 55.3
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.6e-90 334.7 332 51.8
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 4.7e-88 328.9 341 54.0
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 7.6e-86 321.6 215 76.7
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.5e-81 306.6 335 48.7
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 1.4e-76 290.8 211 71.6
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 2.2e-69 266.9 215 63.7
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 2.9e-69 266.5 211 64.9
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 2.1e-67 260.4 208 65.4
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 6.0e-67 258.8 180 77.2
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 2.2e-61 240.4 225 56.4
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 2.2e-61 240.4 185 69.7
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 2.3e-58 230.3 156 75.6
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 2.9e-53 213.4 126 84.9
Nitab4.5_0000638g0270 Nicotiana tabacum HOM05D003674 ORTHO05D004226 4.2e-52 209.5 202 55.4
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 3.5e-51 206.5 154 68.2
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 7.4e-49 198.7 145 62.8
PGSC0003DMG400018342 Solanum tuberosum HOM05D003674 ORTHO05D004226 9.6e-49 198.4 156 62.2
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.1e-48 197.2 121 81.8
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 1.8e-47 194.1 153 58.8
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.4e-47 193.7 120 86.7
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 4.1e-47 193.0 125 76.8
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 6.9e-47 192.2 124 77.4
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 1.5e-46 191.0 224 51.8
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 2.6e-46 190.3 115 80.9
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 7.2e-44 182.2 117 74.4
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.3e-42 177.2 135 62.2
arahy.Tifrunner.gnm1.ann1.Y3H9JV Arachis hypogaea HOM05D003674 ORTHO05D004226 3.8e-37 159.8 107 60.7
Hma1.2p1_1836F.1_g304700 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 6.5e-37 159.1 130 59.2
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 4.6e-35 152.9 110 64.5
Oeu010989.1 Olea europaea HOM05D003674 ORTHO05D004226 1.0e-34 151.8 151 56.3
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 1.0e-34 151.8 136 55.9
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.8e-32 143.7 305 32.1
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.2e-32 142.1 314 31.5
Peaxi162Scf00132g00118 Petunia axillaris HOM05D003674 ORTHO05D004226 1.8e-31 141.0 127 52.8
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.1e-31 140.2 322 31.1
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.1e-31 140.2 304 31.9
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 9.1e-31 138.7 311 31.8
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 7.7e-30 135.6 309 30.7
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 8.5e-29 132.1 319 30.7
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 6.7e-26 122.5 338 27.2
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 3.1e-23 113.6 305 29.5
Haze_13163 Corylus avellana HOM05D003674 ORTHO05D004226 5.3e-23 112.8 92 62.0
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.6e-22 111.3 309 28.2
arahy.Tifrunner.gnm1.ann1.WCYV83 Arachis hypogaea HOM05D003674 ORTHO05D004226 2.9e-21 107.1 71 62.0
Hma1.2p1_1145F.1_g261420 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 8.8e-18 95.5 62 74.2
SHI10406 Sapria himalayana HOM05D003674 ORTHO05D004226 5.3e-15 86.3 62 67.7
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 3.8e-13 80.1 53 77.4
MSTRG.14333 Avicennia marina HOM05D003674 ORTHO05D004226 4.7e-11 73.2 67 53.7
Hma1.2p1_1836F.1_g304710 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.2e-08 64.3 43 83.7
Lj4g0017968 Lotus japonicus HOM05D003674 ORTHO05D004226 9.1e-07 58.9 84 36.9


User provided reference genes

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